http://lod.bco-dmo.org/id/dataset/968787
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2025-07-15
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Histological gonad reproductive scores for purple sea urchins from experiments at the Bodega Marine Laboratory from Sep to Dec 2023
2026-03-18
publication
2026-03-18
revision
Woods Hole Oceanographic Institution (WHOI BCO-DMO)
2026-03-18
publication
https://doi.org/10.26008/1912/bco-dmo.968787.1
Daniel K. Okamoto
University of California-Berkeley
principalInvestigator
Sam E. Karelitz
University of California-Berkeley
principalInvestigator
Daniel Swezey
Kashia Band of Pomo Indians
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Munstermann, M. J., Karelitz, S. E., Swezey, D., Ward-Diorio, R., Okamoto, D. K. (2026) Histological gonad reproductive scores for purple sea urchins from experiments at the Bodega Marine Laboratory from Sep to Dec 2023. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2026-03-18 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.968787.1 [access date]
BML Urchin Histological Scores Dataset Description: Methods and Sampling: <p>These data include histological scores of individual purple sea urchins, <em>Strongylocentrotus purpuratus</em>, involved in a multifactorial laboratory experiment at the Bodega Marine Laboratory between 2023-09 and 2023-12. The experiment investigated how population source (Sonoma, Santa Barbara, San Diego Counties) and temperature (10 degrees, 20 degrees, and dynamic historical temperature trends (21-18 °C mimicking a historical El Nino) affected reproductive stage of the organisms.</p>
<p><strong>Field Collections and Acclimation</strong></p>
<p>We collected animals from three locations in California including Stillwater Cove in Sonoma County, Mohawk Reef in Santa Barbara, and Point Loma in San Diego using SCUBA from 3-5 meters mean low water. Urchins were dry transported layered between kelp and transferred via ground transportation and into the ambient flow through sea water tanks at Bodega Marine Lab within 24 hours of collection. Temperature ramps and acclimation periods were manually adjusted in 1ºC increments.</p>
<p><strong>Mesocosm System</strong></p>
<p>Animals were housed in a temperature controlled seawater system at the Bodega Marine Laboratory.&nbsp;We placed individuals in a custom-built experimental array at the Bodega Marine Laboratory in which individuals from each population were placed in a split plot design in replicated (N = 4 each 140L - 73 (W) x 66 (H) x 32 (D) cm) acrylic tanks per treatment (Oceans Design Inc). Tanks were fed by sumps fixed with both 0.25hp chillers (Aqualogic Delta Star®) and 1000W heat sticks (TSHTCE-1000S) and temperature controllers to regulate temperature in a partially recirculating flow through system with fresh seawater allocated to each system at a rate of 0.5L/min (approx. 5x turnover per day). Each sump was affixed with protein skimmers, UV filter, and bio-ball filters such that water was first filtered and then UV sterilized upon recirculation. Temperatures were set by hand each day for the heatwave treatments and checked with temperature probes for all treatments. We ran experiments from September 15, 2023, to December 19, 2023.</p>
<p><strong>Animal husbandry</strong></p>
<p>We fed individuals uniform dry pellets combining several macroalgal species formulated for the aquaculture of <em>S. purpuratus</em> (Urchinomics Canada Inc., Halifax, NS, Canada). Animals in mesocosms were fed twice per week and we removed uneaten food and refuse every 72 h. To optimize access for all mesocosm inhabitants to abundant food, we enclosed subjects and food in aquaculture baskets (two baskets per mesocosm, 7 or 8 animals per basket, Thunderbird Plastics 48 x 33.5 x 10 cm Fish Farm Tray) such that food was always readily accessible, and movement was not impeded. Each animal was supplied approximately 2.7 grams of pelleted food twice per week for the duration of the experiment.&nbsp;</p>
<p><strong>Histological and gonad assays</strong></p>
<p>Animals were measured and sacrificed and gonads were carefully excised from the opened test. Using a clean, sterile scalpel we excised an approximately 2 mm cross section from the first gonad which we immediately placed in a histological cassette, preserved in Hartmann’s fixative for 24 hours, and transferred to 70% EtOH. Preserved gonads were embedded in paraffin, sliced, stained using eosin and hematoxylin, and mounted. We assessed gonad samples for sex and developmental stage using four visual subsections and the entire sample collectively to ensure agreement among subsamples. Histological slides were scored on a scale of I to IV (Byrne 1990).</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-2023693 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=2023693
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-2023664 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=2023664
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-2023649 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=2023649
completed
Daniel K. Okamoto
University of California-Berkeley
850-644-5260
319 Stadium Drive
Tallahassee
FL
32306
United States
dkokamoto@berkeley.edu
pointOfContact
Sam E. Karelitz
University of California-Berkeley
skarelitz@berkeley.edu
pointOfContact
Daniel Swezey
Kashia Band of Pomo Indians
dan@stewartspoint.org
pointOfContact
asNeeded
Dataset Version: 1
Unknown
treatment
location
sex
HISTO_CASETTE_NO
cat
latitude
longitude
Measure
Scalpel
SCUBA
theme
None, User defined
treatment
site
sex
sample identification
stage
latitude
longitude
featureType
BCO-DMO Standard Parameters
Microscope - Optical
ruler
scalpel
Self-Contained Underwater Breathing Apparatus
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Collaborative Research: The effects of marine heatwaves on reproduction, larval transport and recruitment in sea urchin metapopulations
https://osprey.bco-dmo.org/project/818918
Collaborative Research: The effects of marine heatwaves on reproduction, larval transport and recruitment in sea urchin metapopulations
<p><em>NSF Award Abstract:</em><br />
Rapid and extreme warming events such as El Niño and marine heatwaves have had ecological and economic impacts on nearshore marine ecosystems. These impacts include reductions in biomass and collapses in commercial fisheries. For many species, population booms and busts are controlled by shifts in reproduction and juvenile dispersal related to warmer temperatures and ocean circulation. However, how population fluctuations are shaped by interacting processes that control adult reproduction and larval survival remains unclear. Marine heatwaves often accompany major disruptions in ocean circulation, which can affect survival and the distribution of species that produce free-floating, planktonic larvae. As a result, species can be impacted directly by temperature effects on organismal reproduction and survival, and indirectly by shifts in ocean circulation that affect larval success. This project is examining how the joint effects of temperature and ocean circulation are controlling populations of purple sea urchins (Strongylocentrotus purpuratus). To address project objectives, the team is developing oceanographic models to predict dispersal of planktonic larvae in combination with controlled experiments on adult reproductive success. This project is advancing the understanding of how ecologically important species respond to ocean temperature and circulation, which are forecast to shift under future climate change scenarios. Broader impacts of the project include training of students and post-docs in STEM and educational outreach. Curriculum development and implementation is occurring in collaboration with existing K-12 outreach programs that focus on underserved communities and under-represented groups. The goal is to empower the next generation of scientists to use integrative approaches to predict ecological consequences of climate change.</p>
<p>Purple sea urchins are an ideal species for studying the coupled impacts of warming and ocean circulation on recruitment and survival given a wealth of ecological and organismal data. The species has a mapped genome, can be transported large distances as larvae by ocean currents, and larval abundances in California exhibit orders of magnitude variation with heatwaves and El Niño fluctuations. To quantify the processes that shape spatial and temporal variability in larval supply, researchers are applying a novel combination of biophysical modeling, experiments and statistical modeling of long-term, high-resolution data on larval settlement across the Southern California Bight (SCB). Research module 1 is quantifying spatial and temporal patterns of larval transport using a 3D-biophysical model of the SCB. The model is testing how interactions among historical changes in ocean circulation and temperature, larval life history, and larval behavioral traits affect variation in larval supply in space and time. Research module 2 is focused on how temperature could affect spatial and temporal variation in egg production. Experiments are characterizing reproductive thermal performance curves and quantifying how these vary among populations and organismal history. A novel assay is assessing epigenetic regulation of gene expression associated with performance curves. Finally, Module 3 will integrate mechanistic models from Modules 1 and 2 to statistically assess their ability to explain spatial and temporal trends in a nearly three-decade dataset of larval settlement from six sites in the SCB. This is one of the first studies that integrates models of larval transport, reproductive performance and settlement data to empirically test how physical and biological processes affect local recruitment patterns in complex marine meta-populations.</p>
<p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p>
Urchin metapopulations
largerWorkCitation
project
eng; USA
biota
oceans
-123.298284
-117.272601
32.711484
38.546455
2021-09-15
2021-12-19
Coastal California Waters from San Diego through Mendocino Counties
0
BCO-DMO catalogue of parameters from Histological gonad reproductive scores for purple sea urchins from experiments at the Bodega Marine Laboratory from Sep to Dec 2023
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/970047.rdf
Name: treatment
Units: unitless
Description: <p>Temperature treatment consisting of constant temperatures at 10, 20, and heatwave treatment (HW)</p>
http://lod.bco-dmo.org/id/dataset-parameter/970048.rdf
Name: location
Units: unitless
Description: <p>Source location of the animal; Sonoma County (SON), Santa Barbara County (SB), or San Diego County (SD)</p>
http://lod.bco-dmo.org/id/dataset-parameter/970049.rdf
Name: sex
Units: unitless
Description: <p>Sex of the organism</p>
http://lod.bco-dmo.org/id/dataset-parameter/970050.rdf
Name: HISTO_CASETTE_NO
Units: unitless
Description: <p>Unique identifier for the histological sample that relates to the organismal data file</p>
http://lod.bco-dmo.org/id/dataset-parameter/970051.rdf
Name: cat
Units: unitless
Description: <p>Histological stage category; standard staging scale of 1 to 4 where 4 is fully mature and 1 is immature</p>
http://lod.bco-dmo.org/id/dataset-parameter/970052.rdf
Name: latitude
Units: decimal degrees
Description: <p>Latitude animal was collected</p>
http://lod.bco-dmo.org/id/dataset-parameter/970053.rdf
Name: longitude
Units: decimal degrees
Description: <p>Longitude animal was collected</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
https://doi.org/10.26008/1912/bco-dmo.968787.1
download
onLine
dataset
<p>These data include histological scores of individual purple sea urchins, <em>Strongylocentrotus purpuratus</em>, involved in a multifactorial laboratory experiment at the Bodega Marine Laboratory between 2023-09 and 2023-12. The experiment investigated how population source (Sonoma, Santa Barbara, San Diego Counties) and temperature (10 degrees, 20 degrees, and dynamic historical temperature trends (21-18 °C mimicking a historical El Nino) affected reproductive stage of the organisms.</p>
<p><strong>Field Collections and Acclimation</strong></p>
<p>We collected animals from three locations in California including Stillwater Cove in Sonoma County, Mohawk Reef in Santa Barbara, and Point Loma in San Diego using SCUBA from 3-5 meters mean low water. Urchins were dry transported layered between kelp and transferred via ground transportation and into the ambient flow through sea water tanks at Bodega Marine Lab within 24 hours of collection. Temperature ramps and acclimation periods were manually adjusted in 1ºC increments.</p>
<p><strong>Mesocosm System</strong></p>
<p>Animals were housed in a temperature controlled seawater system at the Bodega Marine Laboratory.&nbsp;We placed individuals in a custom-built experimental array at the Bodega Marine Laboratory in which individuals from each population were placed in a split plot design in replicated (N = 4 each 140L - 73 (W) x 66 (H) x 32 (D) cm) acrylic tanks per treatment (Oceans Design Inc). Tanks were fed by sumps fixed with both 0.25hp chillers (Aqualogic Delta Star®) and 1000W heat sticks (TSHTCE-1000S) and temperature controllers to regulate temperature in a partially recirculating flow through system with fresh seawater allocated to each system at a rate of 0.5L/min (approx. 5x turnover per day). Each sump was affixed with protein skimmers, UV filter, and bio-ball filters such that water was first filtered and then UV sterilized upon recirculation. Temperatures were set by hand each day for the heatwave treatments and checked with temperature probes for all treatments. We ran experiments from September 15, 2023, to December 19, 2023.</p>
<p><strong>Animal husbandry</strong></p>
<p>We fed individuals uniform dry pellets combining several macroalgal species formulated for the aquaculture of <em>S. purpuratus</em> (Urchinomics Canada Inc., Halifax, NS, Canada). Animals in mesocosms were fed twice per week and we removed uneaten food and refuse every 72 h. To optimize access for all mesocosm inhabitants to abundant food, we enclosed subjects and food in aquaculture baskets (two baskets per mesocosm, 7 or 8 animals per basket, Thunderbird Plastics 48 x 33.5 x 10 cm Fish Farm Tray) such that food was always readily accessible, and movement was not impeded. Each animal was supplied approximately 2.7 grams of pelleted food twice per week for the duration of the experiment.&nbsp;</p>
<p><strong>Histological and gonad assays</strong></p>
<p>Animals were measured and sacrificed and gonads were carefully excised from the opened test. Using a clean, sterile scalpel we excised an approximately 2 mm cross section from the first gonad which we immediately placed in a histological cassette, preserved in Hartmann’s fixative for 24 hours, and transferred to 70% EtOH. Preserved gonads were embedded in paraffin, sliced, stained using eosin and hematoxylin, and mounted. We assessed gonad samples for sex and developmental stage using four visual subsections and the entire sample collectively to ensure agreement among subsamples. Histological slides were scored on a scale of I to IV (Byrne 1990).</p>
Specified by the Principal Investigator(s)
- Imported "pop_comparison_histology.csv" into the BCO-DMO system
- Replaced periods with underscores to comply with BCO-DMO guidelines
- Exported file as "968787_v1_pop_comparison_histology_bml.csv"
- Species name Strongylocentrotus purpuratus (urn:lsid:marinespecies.org:taxname:240747) verified as current accepted form on 2025-07-08, using the WoRMs World Registery of Marine Species database.
Specified by BCO-DMO Data Managers
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: PI Supplied Instrument Description:We assessed gonad samples for sex and developmental stage using four visual subsections and the entire sample collectively to ensure agreement among subsamples. Instrument Name: Microscope - Optical Instrument Short Name: Instrument Description: Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a "light microscope". Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB05/
Measure
Measure
PI Supplied Instrument Name: Measure PI Supplied Instrument Description:Animals were measured and sacrificed and gonads were carefully excised from the opened test. Instrument Name: ruler Instrument Short Name: Instrument Description: A device used for measuring or for drawing straight lines, consisting of an elongated piece of rigid or semi-rigid material marked with units for measurement. Device that allows one or more physical dimensions of a sample or specimen to be determined by visible comparison against marked graduations in units of measurement of dimension length.
Scalpel
Scalpel
PI Supplied Instrument Name: Scalpel PI Supplied Instrument Description:Using a clean, sterile scalpel we excised an approximately 2 mm cross section from the first gonad which we immediately placed in a histological cassette, preserved in Hartmann’s fixative for 24 hours, and transferred to 70% EtOH. Instrument Name: scalpel Instrument Short Name: Instrument Description: A scalpel, or lancet, or bistoury, is a small and extremely sharp bladed instrument used for dissection and surgery.
SCUBA
SCUBA
PI Supplied Instrument Name: SCUBA PI Supplied Instrument Description:For the second experiment, we collected animals from three locations in California including Stillwater Cove in Sonoma County, Mohawk Reef in Santa Barbara, and Point Loma in San Diego using SCUBA from 3-5 meters mean low water. Instrument Name: Self-Contained Underwater Breathing Apparatus Instrument Short Name:SCUBA Instrument Description: The self-contained underwater breathing apparatus or scuba diving system is the result of technological developments and innovations that began almost 300 years ago. Scuba diving is the most extensively used system for breathing underwater by recreational divers throughout the world and in various forms is also widely used to perform underwater work for military, scientific, and commercial purposes.
Reference: https://oceanexplorer.noaa.gov/technology/technical/technical.html