| Contributors | Affiliation | Role |
|---|---|---|
| Bourbonnais, Annie | University of South Carolina | Principal Investigator |
| Fawcett, Sarah E. | University of Cape Town (UCT) | Principal Investigator |
| Granger, Julie | University of Connecticut (UConn) | Principal Investigator |
| Burger, Jessica | University of Cape Town (UCT) | Scientist |
| Flynn, Raquel | University of Cape Town (UCT) | Scientist |
| Pillay, Keshnee | Department of Forestry, Fisheries and the Environment, Cape Town | Scientist |
| Wallschuss, Sina | University of Cape Town (UCT) | Scientist |
| Rauch, Shannon | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Seawater samples were collected during a South African Department of Forestry, Fisheries and Environment (DFFE) Integrated Ecosystem Programme cruise aboard the FRV Mirabilis in February 2017 along 14 stations across the St Helena Bay Monitoring Line (~32.5°S) and the Columbine upwelling cell. Hydrographic profiles were obtained using a Sea-Bird SBE 911 CTD with oxygen sensors and 12 x 6-liter (L) Niskin bottles. Oxygen sensors were calibrated against discrete Winkler titrations. Seawater for nutrient analysis (NO₃⁻+NO₂⁻, NO₂⁻, PO₄³⁻, Si(OH)₄) was collected following GO-SHIP protocols, frozen at -20 degrees Celsius (°C), and analyzed using flow injection analysis (FIA) and manual colorimetric methods. NH₄⁺ was determined fluorometrically using OPA derivatization immediately after collection.
N₂O samples were collected in 125-milliliter (mL) gas-tight glass bottles, preserved with saturated HgCl₂, and stored inverted at room temperature. Concentrations and isotopic compositions (δ¹⁵N-N₂O and δ¹⁸O-N₂O) were determined using a continuous-flow isotope ratio mass spectrometer (CF-MC-IRMS) following Bourbonnais et al. (2017) and McIlvin & Casciotti (2011). Calibration included internal seawater standards and N₂O reference gases spanning a wide isotopic range. Derived variables include apparent oxygen utilization (AOU), N-deficit (based on AOU–NO₃⁻ stoichiometry), and N₂O saturation disequilibrium (ΔN₂O), with equilibrium concentrations estimated from Weiss & Price (1980) using atmospheric N₂O histories from Liu & Tanhua (2024).
Data were processed using Ocean Data View (Schlitzer, 2016).
- Imported original file "Wallschuss_data.xlsx" into the BCO-DMO system.
- Marked "#N/A" as a missing data value (note that missing data are empty/blank in the final CSV file).
- Renamed fields to comply with BCO-DMO naming conventions.
- Converted Date column to YYYY-MM-DD format.
- Created date-time column in ISO 8601 format.
- Saved the final file as "969121_v1_n2o_isotopes.csv".
| File |
|---|
969121_v1_n2o_isotopes.csv (Comma Separated Values (.csv), 439.64 KB) MD5:f8c69a33521c9d03b31827df67415254 Primary data file for dataset ID 969121, version 1 |
| Parameter | Description | Units |
| Cruise_ID | Internal Cruise name | unitless |
| Station_ID | Sampling Station | unitless |
| ISO_DateTime_GMT | Date and time in ISO 8601 format | unitless |
| Date | Date of station | unitless |
| Time | Time of station | unitless |
| Latitude | Latitude | Degrees North |
| Longitude | Longitude | Degrees East |
| Bottom_depth | Depth of water colum | meters (m) |
| Pressure | Pressure | decibars (db) |
| Depth | Depth of sample | meters (m) |
| Temperature | Temperature | degrees Celsius |
| Salinity | Salinity | practical salinity units (PSU) |
| Oxygen_mL_L | Dissolved oxygen | milliliters per liter (mL/L) |
| Oxygen_umol_kg | Dissolved oxygen | micromole per kg |
| Nitrate | Nitrate concentration | micromolar (uM) |
| Nitrite | Nitrite concentration | micromolar (uM) |
| Phosphate | Phosphate concentration | micromolar (uM) |
| Silicate | Silicate concentration | micromolar (uM) |
| N2O_equilibrium | Gas equilibrium concentration of N2O at specific temperature/salinity/pressure | nanomolar (nM) |
| N2O | Measured N2O concentration | nanomolar (nM) |
| D_N2O | N2O equilibrium - measured N2O concentration | nanomolar (nM) |
| d15N_N2O | d15N-(bulk) value of N2O (vs. AIR) | per mille (‰) |
| d18O_N2O | d18O value of N2O (vs. VSMOW) | per mille (‰) |
| d15N_Nitrate | d15N value of Nitrate (vs. AIR) | per mille (‰) |
| d18O_Nitrate | d18O value of Nitrate (vs. VSMOW) | per mille (‰) |
| Dataset-specific Instrument Name | Sea-Bird Electronics SBE 911plus CTD system |
| Generic Instrument Name | CTD Sea-Bird SBE 911plus |
| Dataset-specific Description | CTD Rosette: Sea-Bird Electronics SBE 911plus CTD system equipped with a Sea-Bird SBE 43 dissolved oxygen sensor and a 12-bottle rosette sampler (12 × 6-L Niskin bottles). Temperature and conductivity sensors were calibrated annually by the manufacturer. The oxygen sensor was calibrated against discrete Winkler titration measurements. |
| Generic Instrument Description | The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics |
| Dataset-specific Instrument Name | GV Instruments IsoPrime Continuous Flow Multi-Collector Isotope Ratio Mass Spectrometer (CF-MC-IRMS) |
| Generic Instrument Name | GV Instruments IsoPrime Isotope Ratio Mass Spectrometer |
| Dataset-specific Description | N₂O Isotopic and Concentration Analysis: GV Instruments IsoPrime Continuous Flow Multi-Collector Isotope Ratio Mass Spectrometer (CF-MC-IRMS), coupled to a custom-built automated gas extraction and cryogenic purification system, used for δ¹⁵N and δ¹⁸O analysis of dissolved N₂O. |
| Generic Instrument Description | The GV Instruments IsoPrime Isotope Ratio Mass Spectrometer is a laboratory benchtop isotope ratio mass spectrometer (IRMS), that operates in dual inlet or continuous flow modes. It forms part of the IsoPrime system which has a range of sample preparation and purification modules that can be coupled with the IsoPrime IRMS. The modules can analyse a range of samples (solids, liquids or gases) and each prepares the sample to be introduced into the IRMS as purified gases. The resultant prepared gases such as H2, CO2, CO, N2, SO2 or N2O are then ionised and analysed for their isotopic content by the IRMS. The instrument was originally manufactured GV instruments as part of the IsoPrime series, but this part of the business was sold to Isoprime Ltd (a group member of Elementar Analysensysteme GmbH) and this instrument has been superseded by more recent models. |
| Dataset-specific Instrument Name | Lachat QuickChem® 8500 Series 2 |
| Generic Instrument Name | Lachat QuikChem 8500 flow injection analysis system |
| Dataset-specific Description | Flow Injection Autoanalyzer: Lachat QuickChem® 8500 Series 2, used for nitrate + nitrite (NO₃⁻+NO₂⁻) and silicic acid (Si(OH)₄) analysis. Standards and a certified reference material (JAMSTEC) were used for drift correction and validation. |
| Generic Instrument Description | The Lachat QuikChem 8500 Series 2 Flow Injection Analysis System features high sample throughput and simple, but rapid, method changeover. The QuikChem 8500 Series 2 system maximises productivity in determining ionic species in a variety of sample types, from sub-ppb to percent concentrations. Analysis takes 20 to 60 seconds, with a sample throughput of 60 to 120 samples per hour. |
| Dataset-specific Instrument Name | 6-L Niskin bottles |
| Generic Instrument Name | Niskin bottle |
| Dataset-specific Description | CTD Rosette: Sea-Bird Electronics SBE 911plus CTD system equipped with a Sea-Bird SBE 43 dissolved oxygen sensor and a 12-bottle rosette sampler (12 × 6-L Niskin bottles). Temperature and conductivity sensors were calibrated annually by the manufacturer. The oxygen sensor was calibrated against discrete Winkler titration measurements. |
| Generic Instrument Description | A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc. |
| Dataset-specific Instrument Name | Sea-Bird SBE 43 |
| Generic Instrument Name | Sea-Bird SBE 43 Dissolved Oxygen Sensor |
| Dataset-specific Description | CTD Rosette: Sea-Bird Electronics SBE 911plus CTD system equipped with a Sea-Bird SBE 43 dissolved oxygen sensor and a 12-bottle rosette sampler (12 × 6-L Niskin bottles). Temperature and conductivity sensors were calibrated annually by the manufacturer. The oxygen sensor was calibrated against discrete Winkler titration measurements. |
| Generic Instrument Description | The Sea-Bird SBE 43 dissolved oxygen sensor is a redesign of the Clark polarographic membrane type of dissolved oxygen sensors. more information from Sea-Bird Electronics |
| Dataset-specific Instrument Name | Thermo Scientific Genesis 30 Visible |
| Generic Instrument Name | Spectrophotometer |
| Dataset-specific Description | Spectrophotometer: Thermo Scientific Genesis 30 Visible, used for colorimetric determination of nitrite (NO₂⁻) and phosphate (PO₄³⁻). |
| Generic Instrument Description | An instrument used to measure the relative absorption of electromagnetic radiation of different wavelengths in the near infra-red, visible and ultraviolet wavebands by samples. |
| Dataset-specific Instrument Name | Turner Designs Trilogy |
| Generic Instrument Name | Turner Designs Trilogy fluorometer |
| Dataset-specific Description | Ammonium Analysis: Turner Designs Trilogy fluorometer with a UV module, used for NH₄⁺ detection via OPA derivatization. |
| Generic Instrument Description | The Trilogy Laboratory Fluorometer is a compact laboratory instrument for making fluorescence, absorbance, and turbidity measurements using the appropriate snap-in application module. Fluorescence modules are available for discrete sample measurements of various fluorescent materials including chlorophyll (in vivo and extracted), rhodamine, fluorescein, cyanobacteria pigments, ammonium, CDOM, optical brighteners, and other fluorescent compounds. |
NSF Award Abstract:
Nitrous oxide is a long-lived and powerful greenhouse gas. It is also a driver of ozone depletion in the stratosphere. Natural sources of nitrous oxide include production by bacteria through processes called nitrification and denitrification. The ocean is a major source of nitrous oxide to the atmosphere, and areas of high biological productivity like eastern boundary upwelling systems have been shown to generate particularly high nitrous oxide emissions to the atmosphere. The Southern Benguela Upwelling System (SBUS) is arguably the most productive eastern boundary upwelling system, yet there are no published measurements of nitrous oxide from this region. In addition, the relative importance of the major biological pathways of nitrous oxide production in the SBUS is not well established. A team of scientists from the University of Connecticut and the University of South Carolina will investigate nitrous oxide cycling in the SBUS, estimate nitrous oxide fluxes to the atmosphere, and explore what drives changes in nitrous oxide cycling across seasons and in different locations. This study will improve understanding of an important greenhouse gas and how its cycling might change in response to changing ocean conditions. Funding from the proposed work will sponsor the training of a graduate student at the University of Connecticut and an undergraduate student at the University of South Carolina. It will also provide a postdoctoral fellow the opportunity to apply computational skills in regional modeling and machine learning, offering preparation for a career in academia or industry. The project will contribute to undergraduate education and communication of climate change science to the general public and policymakers through the incorporation of the study methodology into an undergraduate Service Learning course at the University of Connecticut.
This work seeks to provide estimates of the regional flux of nitrous oxide to the atmosphere, to examine seasonal dynamics, to assess the biological pathways to nitrous oxide production and consumption, and to query regional and large scale forcings on nitrous oxide dynamics in the SBUS. To this end, the team will (a) measure nitrous oxide concentrations in samples collected in the SBUS during seasonal surveys, measure surface nitrous oxide continuously underway, and derive robust estimates of the sea-to-air flux of nitrous oxide from coincident windspeed; (b) query nitrous oxide production and consumption pathways from measurements of the nitrogen and oxygen isotope ratios of nitrous oxide and nitrate, and investigate environmental correlates of nitrous oxide cycling; (c) develop regional machine learning models for nitrous oxide from these measurements to investigate environmental drivers of seasonal and inter-annual nitrous oxide dynamics, predicting nitrous oxide in the SBUS with historical data and with hydrographic fields derived from a regional dynamical ocean model. The work will give insights into pathways of nitrous oxide production and consumption in an eastern boundary upwelling system bounded by a broad continental shelf – contrasting the greater body of knowledge obtained from active margins. The statistical nitrous oxide models borne of machine learning will ultimately serve to predict nitrous oxide from climate projections of the SBUS, and to anticipate the regional response of nitrous oxide to global ocean de-oxygenation.
This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
| Funding Source | Award |
|---|---|
| NSF Division of Ocean Sciences (NSF OCE) | |
| NSF Division of Ocean Sciences (NSF OCE) |