Concentrations of iron bound to humic-like substances and total iron-binding capacity of humic-like substances from discrete samples collected on the GP17-ANT RVIB Palmer cruise NBP24-01 in the Amundsen Sea from Nov 2023 to Jan 2024

Website: https://www.bco-dmo.org/dataset/969502
Data Type: Cruise Results
Version: 1
Version Date: 2025-07-22

Project
» Collaborative Research: U.S. GEOTRACES GP17-OCE and GP17-ANT: Characterizing iron-binding organic ligands in the Southern Ocean and implications for iron cycling in the global ocean (GP17-OCE and GP17-ANT organic iron-binding ligands)
» Postdoctoral Fellowship: OPP-PRF: Understanding the Role of Specific Iron-binding Organic Ligands in Governing Iron Biogeochemistry in the Southern Ocean (GP17-ANT Humics)
ContributorsAffiliationRole
Moore, LauraOregon State University (OSU)Principal Investigator, Contact
Buck, Kristen NicolleOregon State University (OSU)Scientist
Rauch, ShannonWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
This dataset includes the concentrations of iron (Fe) bound to humic-like substances and total iron-binding capacity of humic-like substances from discrete depth profile and towfish samples collected on the GP17-ANT cruise NBP24-01 on the R/V IB Nathaniel B. Palmer in the Amundsen Sea from 29 November 2023 to 28 January 2024. This project investigates the impact of Fe-binding humic-like substances on Fe biogeochemistry in the Amundsen Sea. The project used a combination of depth profile and surface towfish samples to characterize the contributions of humic-like substances to Fe biogeochemistry across gradients in primary production, water masses, and bathymetric features in the Amundsen Sea. Understanding the distributions of Fe-binding humic-like substances provides insight into the impact of compositional changes of the Fe-binding ligand pool on Fe biogeochemistry and may help elucidate specific sources of these ligands.


Coverage

Location: Amundsen Sea Sector of the Antarctic Continental Margin
Spatial Extent: N:-66.9774 E:-99.6837 S:-74.3892 W:-133.0225
Temporal Extent: 2023-12-08 - 2024-01-13

Methods & Sampling

Water column sampling:
The full water column of 27 stations in the Amundsen Sea was sampled between 8 December 2023 and 13 January 2024 aboard the R/V IB Nathaniel B. Palmer. Depth profile samples were collected from the GEOTRACES trace metal clean rosette sampling system (GTC CTD) outfitted with 24 modified 12-liter (L) GO-FLO (General Oceanics) sampling bottles (Cutter and Bruland, 2012). Surface water (~2 meters) samples for the depth profiles were collected using a trace metal clean surface pump "towfish" system (FISH).

From the trace metal clean rosette and towfish, samples for humic-like substances were filtered (0.2 micrometer (µm), Acropak) inline and collected inside a trace metal clean sampling van. Samples were collected in acid-cleaned, Milli-Q-conditioned, and triple-rinsed narrow-mouth fluorinated high-density polyethylene bottles (FPE; Nalgene) and analyzed shipboard for dissolved iron speciation by Dr. Léo Mahieu in Dr. Kristen Buck's lab before freezing at -20 degrees Celsius (ºC) for shore-based humic-like substance analyses at Oregon State University.

Sample analyses – humic-like substances:
Humic-like substances were measured using cathodic stripping voltammetry following the method first developed by Laglera et al. (2007) and updated by Sukekava et al. (2018). All samples were analyzed using a polarographic 797 VA Computrace (Metrohm) stand equipped with a hanging mercury drop electrode, platinum rod auxiliary electrode, Ag/AgCl reference electrode, and an acid-cleaned Teflon analytical cell. Briefly, frozen samples were set out to thaw overnight at room temperature in the dark. The following day, 10 milliliter (mL) sub-samples were aliquoted into each of 2 paired acid-cleaned, pre-conditioned 50 mL polypropylene vials. The pH of the samples was then set to 8.2 with the addition of 50 microliters (μL) of 1.5 molar (M) boric acid buffer. Iron standard was added to one of the paired vials (vial B, final concentration 60 nanomolar (nM)) to saturate all the humic-like substance binding groups in the solution. Both aliquots were then left to equilibrate for a minimum of 14 hours. After the equilibration period, 500 μL of the 0.4M KBrO3- catalyst was dispensed into the cell with each aliquot immediately prior to analysis. Electrochemical analysis was performed using linear sweep voltammetry (-0.1 to -1 volts (V), scan rate 50 millivolts per second (mV s-1)) with a 120-second deposition period with stirring at -0.1V. Measurements were run in triplicate with a 300-second purge step with high-purity N2 gas prior to analyzing each aliquot. For each sample, the Fe-free aliquot (vial A) was analyzed first, immediately followed by the Fe-saturated aliquot (vial B). Three standard additions of Fe-saturated SRFA standard (0.1, 0.2, and 0.3 milligrams (mg) SRFA per liter) were then added successively to the Fe-saturated aliquot to generate a calibration curve. A 70s N2 purge was included after each addition to ensure oxygen removal and all additions were measured in triplicate. The Teflon analytical cell was rinsed thoroughly with Milli-Q water between samples to minimize carryover.

Peak heights were extracted from scans using ECDSOFT, then converted into the concentration of electroactive humic substances (micrograms (μg) eq SRFA-1) using the slope of the curve generated by the three standard additions. The standard addition slope was applied to the peaks obtained for both vials A and B to obtain the ambient Fe-binding humic and total Fe-binding humic concentrations, respectively, in mg SRFA eq per liter. Units were then adjusted to nM Fe eq using the measured binding capacity of SRFA in seawater 14.6 ± 0.4 nM Fe mg SRFA-1. Variability between triplicate scans averaged 0.02 nM Fe eq for both ambient and total humic results and variability between replicate samples averaged 0.05 (median 0.03) nM Fe eq and 0.06 (median 0.04) nM Fe eq for ambient and total humic-like substances, respectively. The limit of detection (LOD) was calculated as three times the standard deviation of triplicate scans in the lowest measured ambient Fe-binding humic concentration (0.06 ± 0.02 nM Fe eq) and was estimated to be 0.05 nM Fe eq. All measured values were above the LOD.


Data Processing Description

Data were flagged using the SeaDataNet quality flag scheme recommended by GEOTRACES (https://www.geotraces.org/geotraces-quality-flag-policy/) and described below. Notes specific to the application of these flags to this dataset are noted in brackets […].

0: No Quality Control: No quality control procedures have been applied to the data value. This is the initial status for all data values entering the working archive. [Not used].

1: Good Value: Good quality data value that is not part of any identified malfunction and has been verified as consistent with real phenomena during the quality control process. [Used for analyses that included replicates].

2: Probably Good Value: Data value that is probably consistent with real phenomena, but this is unconfirmed or data value forming part of a malfunction that is considered too small to affect the overall quality of the data object of which it is a part. [Used when no replicates were available to further verify the quality of the data].

3: Probably Bad Value: Data value recognized as unusual during quality control that forms part of a feature that is probably inconsistent with real phenomena. [Used for Fe bound to humics data when concentration of Fe bound to humics is greater than preliminary Fe concentrations by more than 0.03 nM (which is the median std dev of replicate analyses), or where no preliminary Fe data is available, but interpolated Fe values are greater than Fe-humic].

4: Bad Value: An obviously erroneous data value. [Used when anomalously high or low values of Fe-bound to humics or total Fe-binding capacity of humics is found in a depth profile with no correlation to existing physical or chemical data].

5: Changed Value: Data value adjusted during quality control. Best practice strongly recommends that the value before the change be preserved in the data or its accompanying metadata. [Not used].

6: Value Below Detection Limit: The level of the measured phenomenon was less than the limit of detection (LOD) for the method employed to measure it. [Not used].

7: Value in Excess: The level of the measured phenomenon was too large to be quantified by the technique employed to measure it. The accompanying value is the measurement limit for the technique. [Not used].

8: Interpolated Value: This value has been derived by interpolation from other values in the data object. [Not used].

9: Missing Value: The data value is missing. Any accompanying value will be a magic number representing absent data [When sample was not collected the notation 'na' for 'not applicable' was used].

A: Value Phenomenon Uncertain: There is uncertainty in the description of the measured phenomenon associated with the value such as chemical species or biological entity. [Not used]


BCO-DMO Processing Description

- Imported original file "BCO_DMO_Moore_GP17ANT_HS-FeL.xlsx" into the BCO-DMO system.
- Marked "NA" as a missing data value (missing data are blank/empty in the final CSV file).
- Created date-time fields in ISO 8601 format.
- Saved the final file as "969502_v1_gp17-ant_hs-fel.csv".


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Data Files

File
969502_v1_gp17-ant_hs-fel.csv
(Comma Separated Values (.csv), 75.61 KB)
MD5:3b4f27441d96e3120efed004daf3ad4a
Primary data file for dataset ID 969502, version 1

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Related Publications

Cutter, G. A., & Bruland, K. W. (2012). Rapid and noncontaminating sampling system for trace elements in global ocean surveys. Limnology and Oceanography: Methods, 10(6), 425–436. doi:10.4319/lom.2012.10.425
Methods
Laglera, L. M., Battaglia, G., & van den Berg, C. M. G. (2007). Determination of humic substances in natural waters by cathodic stripping voltammetry of their complexes with iron. Analytica Chimica Acta, 599(1), 58–66. doi:10.1016/j.aca.2007.07.059
Methods
Sukekava, C., Downes, J., Slagter, H. A., Gerringa, L. J. A., & Laglera, L. M. (2018). Determination of the contribution of humic substances to iron complexation in seawater by catalytic cathodic stripping voltammetry. Talanta, 189, 359–364. https://doi.org/10.1016/j.talanta.2018.07.021
Methods

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Parameters

ParameterDescriptionUnits
CRUISE_ID

Cruise identifier

unitless
SECT_ID

Name of GEOTRACES cruise section

unitless
STNNBR

Station number

unitless
PLATFORM

Sampling system used. GTC CTD = GEOTRACES trace metal CTD rosette. FISH = towfish.

unitless
CASTNO

Cast number

unitless
SAMPNO

Order of samples taken in each cast

unitless
EVENT_NO

Event number

unitless
GEOTRC_SAMPNO

GEOTRACES sample number

unitless
BTLNBR

Bottle number (GOFLO # for GTC CTD) used for sample collection. Samples were collected directly inline from towfish and noted FISH.

unitless
DATE

Date in ship time when sampling was initiated

unitless
TIME

Ship time (UTC) when field sampling platform was deployed

unitless
ISO_DateTime_UTC

Date and time (UTC) in ISO 8601 format when sampling was initiated

unitless
LATITUDE

Ship position when sampling platform was deployed

decimal degrees North
LONGITUDE

Ship position when sampling platform was deployed

decimal degrees East
DEPTH

Seafloor depth in meters. Blank/empty for towfish samples.

meters (m)
CTDPRS

Pressure in decibar of sample collection. Blank/empty for towfish samples.

decibars (db)
SAMPDEPTH

Depth of sample collection

meters (m)
BTL_DATE

Date sample collected. Blank/empty for towfish samples.

unitless
BTL_TIME

Time (UTC) sample collected. Blank/empty for towfish samples.

unitless
BTL_ISO_DateTime_UTC

Date and time (UTC) in ISO 8601 format when bottle sample was collected. Blank/empty for towfish samples.

unitless
BTL_LAT

Ship position when sample was collected. Blank/empty for towfish samples.

decimal degrees North
BTL_LON

Ship position when sample was collected. Blank/empty for towfish samples.

decimal degrees East
HSFe_D_CONC

Concentration of iron bound to humic-like substances in field samples; blank/empty when no sample was available for analyses.

nanomoles Fe equivalents per liter (NMOL_FE_EQ/L)
HSFe_D_STDEV

Standard deviation replicate iron bound to humic substances concentration measurements in field samples. If no replicates, standard deviation reported is that of replicate scans of the same aliquot. Blank/empty when no sample was available for analyses.

nanomoles Fe equivalents per liter (NMOL_FE_EQ/L)
HSFe_D_COUNT

Number of separate analyses of this sample used to compute average concentration and standard deviation. Blank/empty when no sample was available for analyses.

unitless
HSFe_D_FLAG

Quality flag for HSFe_D_CONC. Blank/empty when no sample was available for analyses. See 'Processing Description' section of metadata for flag definitions.

unitless
THSFe_D_CONC

Total iron binding capacity of humic substances in field samples; blank/empty when no sample was available for analyses.

nanomoles Fe equivalents per liter (NMOL_FE_EQ/L)
THSFe_D_STDEV

Standard deviation of replicate total iron binding capacity of humic substances measurements in field samples. If no replicates, standard deviation reported is that of replicate scans of the same aliquot. Blank/empty when no sample was available for analyses.

nanomoles Fe equivalents per liter (NMOL_FE_EQ/L)
THSFe_D_COUNT

Number of separate analyses of this sample used to compute average concentration and standard deviation. Blank/empty when no sample was available for analyses.

unitless
THSFe_D_FLAG

Quality flag for THSFe_D_CONC. Blank/empty when no sample was available for analyses. See 'Processing Description' section of metadata for flag definitions.

unitless


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Instruments

Dataset-specific Instrument Name
GEOTRACES trace metal clean rosette sampling system (GTC CTD)
Generic Instrument Name
CTD Sea-Bird SBE 911plus
Dataset-specific Description
The U.S. GEOTRACES trace element carousel sampling system (GTC rosette) was comprised of an SBE-9/11plus CTD/deck unit, and 24 x 12-liter Go-Flo bottles (plus spares). The GTC system sensor array consisted of dual SeaBird SBE-3 temperature and SBE-4C conductivity sensors, an SBE-43 dissolved oxygen sensor, a Seapoint fluorometer, and a WetLabs C-Star transmissometer. The GTC rosette also included a Benthos altimeter, which ceased functioning during the latter part of the cruise and was replaced with a Valeport altimeter, and a Seapoint turbidity sensor.
Generic Instrument Description
The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics

Dataset-specific Instrument Name
Towfish
Generic Instrument Name
GeoFish Towed near-Surface Sampler
Dataset-specific Description
Towfish: Seawater samples were collected with a custom surface sampling system, "towfish" comprised of acid cleaned PFA Teflon tubing and a Teflon diaphragm pump.
Generic Instrument Description
The GeoFish towed sampler is a custom designed near surface (

Dataset-specific Instrument Name
General Oceanics 12-L GO-FLO bottle
Generic Instrument Name
GO-FLO Bottle
Dataset-specific Description
General Oceanics 12-L GO-FLO bottle samplers were used with the rosette system for trace metal clean seawater collection from depth profiles.
Generic Instrument Description
GO-FLO bottle cast used to collect water samples for pigment, nutrient, plankton, etc. The GO-FLO sampling bottle is specially designed to avoid sample contamination at the surface, internal spring contamination, loss of sample on deck (internal seals), and exchange of water from different depths.

Dataset-specific Instrument Name
Metrohm VA 797
Generic Instrument Name
Metrohm 797 VA Computrace voltammetry system
Dataset-specific Description
Metrohm VA 797 Computrace equipped with a hanging mercury drop electrode was used to measure Fe bound to humic like substances and total Fe binding capacity of humic like substances.
Generic Instrument Description
A computer-controlled voltammetric measuring stand with built-in potentiostat and galvanostat. Applications include voltammetric trace analysis of metal ions and other substances, and Cyclic Voltammetric Stripping (CVS) for the determination of additives in electroplating baths. Operation of the 797 VA Computrace Stand follows the potentiostatic 3-electrode principle in which the voltage of the working mercury electrode is controlled by means of a virtually currentless Ag/AgCl reference electrode to the preset desired value and the current flows across a separate platinum auxiliary electrode. The pneumatically operated Multi-Mode Electrode (MME) can operate in Hanging Mercury Drop Electrode (HMDE), Dropping Mercury Electrode (DME), or Static Mercury Drop Electrode (SMDE) modes. A Rotating Disk Electrode with exchangeable electrode tips can be used in place of the MME. Additional accessories such as autosamplers and sample processors allow for full automation of analysis, and a range of accessory kits are available to extend the range of applications. The instrument supports over 220 analytical methods.


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Deployments

NBP2401

Website
Platform
RVIB Nathaniel B. Palmer
Report
Start Date
2023-11-28
End Date
2024-01-28
Description
See more information at: R2R https://www.rvdata.us/search/cruise/NBP2401 BODC https://www.bodc.ac.uk/resources/inventories/cruise_inventory/report/18091/ US GEOTRACES https://usgeotraces.ldeo.columbia.edu/content/gp17-ant Description: The U.S. GEOTRACES GP17-ANT expedition departed Punta Arenas, Chile on November 29th, 2023 and arrived in Lyttelton, New Zealand on January 28th, 2024. The cruise took place in the Amundsen Sea aboard the R/V Nathaniel B. Palmer with a team of 35 scientists led by Peter Sedwick (Old Dominion University), Phoebe Lam (University of California, Santa Cruz), and Robert Sherrell (Rutgers University). GP17 was planned as a two-leg expedition, with its first leg (GP17-OCE) as a southward extension of the 2018 GP15 Alaska-Tahiti expedition and this second leg (GP17-ANT) into coastal and shelf waters of Antarctica's Amundsen Sea.


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Project Information

Collaborative Research: U.S. GEOTRACES GP17-OCE and GP17-ANT: Characterizing iron-binding organic ligands in the Southern Ocean and implications for iron cycling in the global ocean (GP17-OCE and GP17-ANT organic iron-binding ligands)


NSF Award Abstract
Iron is an essential element for life and plays an important role in defining how much atmospheric carbon dioxide is taken up into the ocean by phytoplankton. However, iron cycling is closely governed by the chemistry of seawater; nearly all iron in seawater is associated with various unknown organic compounds, called iron-binding ligands, which impact whether and how iron is utilized by organisms and the distribution of iron throughout the ocean. Detail understanding of the cycling of organic iron-binding ligands is necessary to understand iron cycling in the oceans and the connections between iron cycling and atmospheric carbon. The proposed research will be carried out as a part of US GEOTRACES expedition to test the hypothesis that the Southern Ocean is a globally significant source of iron-binding organic ligands, and that different sources of these organic molecules lead to different iron-ligand characteristics. The US GEOTRACES program is a large collaborative effort to sample ocean systems at high resolution for a suite of key trace elements and isotopes. The South Pacific and Southern Ocean regions targeted by the upcoming US GEOTRACES GP17 cruises are important locations of water mass formation and the subsequent transport of carbon and nutrients to the global ocean. Organic ligands produced in these regions thus have important implications for the stabilization, reactivity, and residence time of iron along the path of global water mass circulation and could impact the global oceanic inventory of dissolved iron.

This project will measure the distribution of iron-binding organic ligands, and identify specific organic molecules that comprise these ligands, in field and experimental samples collected on upcoming US GEOTRACES cruises in the South Pacific (GP17-OCE) and Southern Ocean (GP17-ANT). These datasets will be utilized to conduct the first extensive intercalibration of the two most widely used approaches for characterizing iron-binding organic ligands, providing important insight into these datasets and how they can be synthesized to improve understanding of iron cycling in the oceans. All data from this project will be made publicly available. Project activities will provide educational and training opportunities for middle school, high school, undergraduate, and graduate students, and results will be shared with the public through the development of virtual reality modules and via local outreach events.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.


Postdoctoral Fellowship: OPP-PRF: Understanding the Role of Specific Iron-binding Organic Ligands in Governing Iron Biogeochemistry in the Southern Ocean (GP17-ANT Humics)

Coverage: Amundsen Sea Sector of the Antarctic Continental Margin


NSF Award Abstract:
Iron is an essential nutrient in the global ocean, required by phytoplankton to perform several essential cellular functions. In the Southern Ocean, iron is especially scarce and exerts a primary control on primary production and resulting CO2 uptake by the surface ocean. Most dissolved iron in the Southern Ocean is bound to a complex mixture of organic iron-binding compounds, called ligands. The concentrations and identities of these ligands control iron bioavailability, reactivity, and transport. Exopolysaccharides (EPS) are a particularly important group of ligands that are produced in high concentrations by local microbial communities for a variety of functions, including as cryoprotectants. Despite the known importance of EPS, most iron-binding ligand studies focus on total ligand concentrations or siderophore identification. Siderophores, small iron-binding molecules produced as a microbial iron acquisition strategy, are thought to play a disproportionate role in iron cycling due to their unusually high iron-binding affinities. This project adds essential EPS concentration measurements to a subset of samples from the 2023 U.S. GEOTRACES GP17-ANT expedition to the Amundsen Sea. This project integrates EPS, siderophores and bulk ligand measurements for the first time, thereby offering unprecedented insights into how the composition of organic ligands governs the supply and fate of iron to the Southern Ocean.

The research plan involves a combination of field and experimental approaches. Field samples for electrochemical EPS analysis will be collected on a GP17-ANT transect spanning from the ice edge to open water. Previously funded paired samples of bulk ligand concentrations and siderophore identification will also be taken along the same transect. Results from the three analyses will be combined to assess the relative contributions of EPS and siderophores to the total ligand pool and interpret their impact on iron biogeochemical cycling in the region. Lab experiments will be performed to evaluate whether EPS alters the size fractionation of siderophores and iron in seawater, shuttling both species into the particulate phase. Experimental results will then be used to interpret the integrated field data and improve understanding of the impact of ligands on iron transport and bioavailability in the Amundsen Sea.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)
NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP)

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