http://lod.bco-dmo.org/id/dataset/969521
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2025-07-22
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Time-Varying Cycling Rates of size-fractionated Particulate Organic Carbon during the Decay of a North Atlantic Spring Bloom in May 2021
2025-08-12
publication
2025-08-12
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2025-08-12
publication
https://doi.org/10.26008/1912/bco-dmo.969521.1
Daniel Clements
University of California-Santa Cruz
principalInvestigator
Phoebe J. Lam
University of California-Santa Cruz
principalInvestigator
Olivier Marchal
Woods Hole Oceanographic Institution
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Clements, D., Marchal, O., Lam, P. J. (2025) Time-Varying Cycling Rates of size-fractionated Particulate Organic Carbon during the Decay of a North Atlantic Spring Bloom in May 2021. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2025-08-12 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.969521.1 [access date]
Spring Bloom Decay POC Dataset Description: <p>Here we provide only model output. The raw data can be accessed through the NASA SeaBass repository&nbsp;(see related datasets).&nbsp;</p> Methods and Sampling: <p><strong>Location:&nbsp;</strong>The model is fit to&nbsp;size-fractionated POC concentration data, as well as primary production and respiration rate data, to estimate the temporal and vertical variations in POC cycling rates in the upper 500 m of the Porcupine Basin during the decline of a phytoplankton bloom. The data used to estimate model parameters and the cycling rates of POC, were collected during the N. Atlantic EXPORTS cruise in May 2021.</p>
<p><strong>Data:&nbsp;</strong>The particle cycling model is fit to Measurements from the N. Atlantic EXPORTS cruise in May of 2021. &nbsp;The following lists these data, which can all be found on the NASA SeaBass repository, cruise dataset (see related publications).&nbsp;</p>
<p>·&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Size fractionated POC data from Large Volume <em>in situ</em> filtration pumps (K. Buesseler)<br />
·&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Primary production using <sup>13</sup>C incubations (A. Marchetti)<br />
·&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Size fractionated respiration rates (S. Gifford)<br />
·&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; RESPIRE trap respiration rates (A. Santoro)<br />
·&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Zooplankton concentrations from MOCNESS &nbsp;(A. Maas)</p>
<p>&nbsp;</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1829614 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1829614
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1829790 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1829790
completed
Daniel Clements
University of California-Santa Cruz
dclements@bigelow.org
pointOfContact
Phoebe J. Lam
University of California-Santa Cruz
831-459-4587
1156 High St. Department of Ocean Sciences
Santa Cruz
CA
95064
USA
pjlam@ucsc.edu
pointOfContact
Olivier Marchal
Woods Hole Oceanographic Institution
5082893374
266 Woods Hole Road
Woods Hole
MA
025431041
US
omarchal@whoi.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
DY131
SG2105
JC214
service
Deployment Activity
Celtic Sea
Eastern Atlantic
Porcupine Abyssal Plain North Atlantic, approximately 49˚N, 16.5˚W
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
EXport Processes in the Ocean from Remote Sensing
http://oceanexports.org/
EXport Processes in the Ocean from Remote Sensing
EXport Processes in the Ocean from Remote Sensing (EXPORTS) is a large-scale NASA-led field campaign that will provide critical information for quantifying the export and fate of upper ocean net primary production (NPP) using satellite observations and state of the art ocean technologies.
Ocean ecosystems play a critical role in the Earth’s carbon cycle and the quantification of their impacts for both present conditions and for predictions into the future remains one of the greatest challenges in oceanography. The goal of the EXport Processes in the Ocean from Remote Sensing (EXPORTS) Science Plan is to develop a predictive understanding of the export and fate of global ocean net primary production (NPP) and its implications for present and future climates. The achievement of this goal requires a quantification of the mechanisms that control the export of carbon from the euphotic zone as well as its fate in the underlying "twilight zone" where some fraction of exported carbon will be sequestered in the ocean’s interior on time scales of months to millennia. In particular, EXPORTS will advance satellite diagnostic and numerical prognostic models by comparing relationships among the ecological, biogeochemical and physical oceanographic processes that control carbon cycling across a range of ecosystem and carbon cycling states. EXPORTS will achieve this through a combination of ship and robotic field sampling, satellite remote sensing and numerical modeling. Through a coordinated, process-oriented approach, EXPORTS will foster new insights on ocean carbon cycling that maximizes its societal relevance through the achievement of U.S. and International research agency goals and will be a key step towards our understanding of the Earth as an integrated system.
EXPORTS
largerWorkCitation
program
Collaborative Research: Estimation of particle aggregation and disaggregation rates from the inversion of chemical tracer data
https://osprey.bco-dmo.org/project/833063
Collaborative Research: Estimation of particle aggregation and disaggregation rates from the inversion of chemical tracer data
<p>NSF Award Abstract:<br />
The biological carbon pump in the ocean is an important process by which atmospheric carbon dioxide (CO2) is effectively transported from the surface ocean to the deep ocean, and thereby removing CO2 from the atmosphere. This transport occurs in a multi-step process. First, phytoplankton carry out photosynthesis in the surface, sunlit waters of the ocean, taking up atmospheric CO2 and fixing it into particulate organic carbon. A portion of the organic carbon contained in the phytoplankton is packaged into larger clusters (aggregates) that can sink to the deep ocean. The deeper these aggregates sink, the longer the carbon contained in them is removed from the atmosphere. The depth to which aggregates sink varies greatly over time and space and are difficult to predict. In general, larger aggregates sink more quickly, and thus more deeply, than smaller particles. Processes that promote aggregation to larger particles should enhance the biological pump, and processes that promote disaggregation (breakdown of particle clusters) and regeneration (decomposition) of the organic carbon should decrease the strength and efficiency of the biological pump. Particle aggregation and disaggregation rates are thus crucial to understanding the variability of the biological pump, but are very difficult to measure directly. This project will use chemical tracers and a modeling approach to quantify the rates of these important processes. The investigators will apply the approach to a variety of oceanic environments and provide the first large-scale effort to quantify these rates in the upper 500 meters of the ocean. As part of this project, they will interface with the CalTeach program, which is a University of California Science and Math Initiative to place university science, math, and engineering majors in K-12 classrooms. Many of these CalTeach interns go on to become K-12 science teachers in California. Two undergraduate students enrolled in the CalTeach program at the University of California, Santa Cruz (UCSC) will participate as laboratory assistants and develop a hands-on teaching module on the carbon cycle and biological pump for K-12 classrooms.</p>
<p>Scientists from the University of California at Santa Cruz and Woods Hole Oceanographic Institution propose to estimate the rates of particle aggregation and disaggregation in the mesopelagic zone through the inversion of observations of three chemical tracers, namely thorium (Th)-234, lithogenic particles, and particulate organic carbon (POC) distributed between small, suspended particles and large, sinking particles. The isotopes of Th have long been used to estimate rates of particle dynamics processes because of their known source function and particle-reactive behavior. Previous work has shown that lithogenic particles act as an inert, passive tracer of particle dynamics. The investigators will couple thorium and lithogenic particle measurements to measurements of POC to estimate particle aggregation and disaggregation rates from a wide range of oceanographic environments. Estimates of particle cycling rates deduced from the inversion of chemical tracer data provide a crucial quantitative constraint to which rates derived from other approaches can be compared. The main objective of this work is to estimate depth- varying (dis-) aggregation rates at each station of the EXPORTS and GEOTRACES cruises that are most consistent with the tracer data. This work will also produce depth-varying estimates of POC remineralization rates and particle sinking rates.</p>
<p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p>
Particle aggregation
largerWorkCitation
project
eng; USA
oceans
Celtic Sea; Eastern Atlantic; Porcupine Abyssal Plain North Atlantic, approximately 49˚N, 16.5˚W
-16
-14
48
50
2021-05-06
2021-05-27
Ocean Station Papa, North Atlantic, North Pacific
0
BCO-DMO catalogue of parameters from Time-Varying Cycling Rates of size-fractionated Particulate Organic Carbon during the Decay of a North Atlantic Spring Bloom in May 2021
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
132554
https://darchive.mblwhoilibrary.org/server/api/core/bitstreams/ef18f9fb-a37c-4449-8fd2-e32dd16e88fb/content
download
https://doi.org/10.26008/1912/bco-dmo.969521.1
download
onLine
dataset
<p><strong>Location:&nbsp;</strong>The model is fit to&nbsp;size-fractionated POC concentration data, as well as primary production and respiration rate data, to estimate the temporal and vertical variations in POC cycling rates in the upper 500 m of the Porcupine Basin during the decline of a phytoplankton bloom. The data used to estimate model parameters and the cycling rates of POC, were collected during the N. Atlantic EXPORTS cruise in May 2021.</p>
<p><strong>Data:&nbsp;</strong>The particle cycling model is fit to Measurements from the N. Atlantic EXPORTS cruise in May of 2021. &nbsp;The following lists these data, which can all be found on the NASA SeaBass repository, cruise dataset (see related publications).&nbsp;</p>
<p>·&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Size fractionated POC data from Large Volume <em>in situ</em> filtration pumps (K. Buesseler)<br />
·&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Primary production using <sup>13</sup>C incubations (A. Marchetti)<br />
·&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Size fractionated respiration rates (S. Gifford)<br />
·&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; RESPIRE trap respiration rates (A. Santoro)<br />
·&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Zooplankton concentrations from MOCNESS &nbsp;(A. Maas)</p>
<p>&nbsp;</p>
Specified by the Principal Investigator(s)
<p><strong>Inverse Method:&nbsp;</strong>Two inverse methods of sequential estimation theory are applied: an Extended Kalman Filter (EKF) and a linearized Rauch-Tung-Striebel (RTS) smoother. These two methods are applied in order to provide estimates of the time-dependent rate parameters. By construction, these estimates are consistent both with the measurements (section 2) and with the governing equations of the POC cycling model described in Clements et al. 2025 (see related publications). Both methods can be viewed as recursive weighted least-squares methods: equations are fitted in the least-squares sense to data by adjusting the rate parameters when data are available, and the fit is weighted by the respective uncertainties in the data and in the equations.</p>
<p>The code to generate these data are provide in github repository “github.com/djclements1/NA\_Export\_POC-rate-inversion” and stored on Zenodo (see related publications).&nbsp;</p>
Specified by the Principal Investigator(s)
* added netcdf dimensions and variables to file description
Specified by BCO-DMO Data Managers
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Cruise: DY131
DY131
Community Standard Description
International Council for the Exploration of the Sea
RRS Discovery
vessel
DY131
Craig M. Lee
University of Washington
https://www.bodc.ac.uk/resources/inventories/cruise_inventory/reports/dy131.pdf
Report describing DY131
Cruise: SG2105
SG2105
B/O Sarmiento de Gamboa
Community Standard Description
International Council for the Exploration of the Sea
B/O Sarmiento de Gamboa
vessel
SG2105
Kenneth O. Buesseler
Woods Hole Oceanographic Institution
https://twilightzone.whoi.edu/missions/r-v-sarmiento-de-gamboa-may-2021/
Report describing SG2105
Cruise: JC214
JC214
RRS James Cook
Community Standard Description
International Council for the Exploration of the Sea
RRS James Cook
vessel
JC214
Jason Graff
Oregon State University
Community Standard Description
International Council for the Exploration of the Sea
RRS Discovery
vessel
B/O Sarmiento de Gamboa
Community Standard Description
International Council for the Exploration of the Sea
B/O Sarmiento de Gamboa
vessel
RRS James Cook
Community Standard Description
International Council for the Exploration of the Sea
RRS James Cook
vessel