| Contributors | Affiliation | Role |
|---|---|---|
| Sutherland, Kelly Rakow | University of Oregon | Principal Investigator, Contact |
| Cowen, Robert K. | Oregon State University (OSU) | Co-Principal Investigator |
| Sponaugle, Su | Oregon State University (OSU) | Co-Principal Investigator |
| Wallace, Elizabeth | University of Oregon | Student |
| Rauch, Shannon | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Gelatinous zooplankton and larval fish were collected using MOCNESS (Multiple Opening/Closing Net and Environmental Sensing System) tows in 25-meter (m) depth increments in the upper 100m of the water column (nets: 1 square meter (m²) with 333-micrometer (µm) mesh and 4 m² with 1000 µm mesh). Organisms in each tow were grouped by lowest visually identifiable taxon. Maximum and minimum lengths of individuals in each group were measured with a ruler and the volume of each sample of grouped individuals was measured by displacement. Samples were frozen at -20 degrees Celsius (°C) prior to preparation for stable isotope analysis.
Wet weight of each grouped sample was measured upon thawing the sample. Samples were dried at 60°C, then dry weights were measured. Samples were then crushed and homogenized using an agate mortar and pestle. Stable isotope compositions and carbon and nitrogen contents were measured by elemental analyzer-isotope ratio mass spectrometry (EA-IRMS) at the UC Davis Stable Isotope Facility. Ash-free dry weights were determined by weighing samples before and after combusting dried samples at 500°C.
- Imported original file "NCC_GZ_isotopes.csv" into the BCO-DMO system.
- Converted date column to YYYY-MM-DD format.
- Marked "X" as a missing data value (missing data are empty/blank in the final CSV file).
- Saved the final file as "986609_v1_ncc_gz_isotopes.csv".
| File |
|---|
986609_v1_ncc_gz_isotopes.csv (Comma Separated Values (.csv), 160.81 KB) MD5:2de696075cdce19f1307bdebdf90176f Primary data file for dataset ID 986609, version 1 |
| Parameter | Description | Units |
| animal_type | Organism type; grouped as Fish, Gelatinous zooplankton, or Octopus | unitless |
| phylum | Phylum | unitless |
| class | Class (left blank if not identified to class level) | unitless |
| order | Order (left blank if not identified to order level) | unitless |
| family | Family (left blank if not identified to family level) | unitless |
| genus | Genus (left blank if not identified to genus level) | unitless |
| species | Species (left blank if not identified to species level) | unitless |
| sample_full | Unique sample name for each grouped organism sample. (###-seasonyear transectstation taxon) | unitless |
| d13C | Carbon stable isotope composition (‰ vs. VPDB). Calibrated against international standards and corrected for instrument linearity and drift using in-house reference materials by UCD SIF. StDev of reference materials 0.10‰, StDev of gelatinous zooplankton standards 0.169‰. | per mil vs. VPDB |
| C_ug | Carbon content in measured sample of dried powdered tissue, calculated from IRMS peak area. | micrograms (µg) |
| d15N | Nitrogen stable isotope composition (‰ vs. Air). Calibrated against international standards and corrected for instrument linearity and drift using in-house reference materials by UCD SIF. StDev of reference materials 0.15‰, StDev of gelatinous zooplankton standards, 0.374‰. | per mil vs. Air |
| N_ug | Nitrogen content in measured sample of dried powdered tissue, calculated from IRMS peak area. | micrograms (µg) |
| sample_weight_mg | Weight of dried powder sample tissue analyzed for d13C, d15N, C contents, and N contents | milligrams (mg) |
| season | Season when samples were collected (Winter=Feb/March, Summer=July/Aug) | unitless |
| cruise | Cruise identifier: W22=Winter 2022, S22=Summer 2022, W23=Winter 2023, S23=Summer 2023 | unitless |
| year | Year when samples were collected | unitless |
| collection_date | Date when samples were collected | unitless |
| transect | Sampling transect identifier: GH=Grays Harbor, CR=Columbia River, CM=Cape Meares, NH= Newport hydrographic ,HH=Heceta Head, RR= Rogue River | unitless |
| station | Location along transect: 1=closet nearshore; 6=furthest offshore | unitless |
| lat | Latitude of net tow start location | decimal degrees |
| long | Longitude of net tow start location | decimal degrees |
| moc | Net type: 1=Moc1, 1m2 opening 333um mesh; 4=Moc4, 4m2 opening 1000um mesh | unitless |
| collection_depth_m_min | Minimum depth of range sampled by the MOCNESS net | meters (m) |
| collection_depth_m_max | Maximum depth of range sampled by the MOCNESS net | meters (m) |
| life_stage | Life/development stage of organism(s) in sample | unitless |
| number_of_individuals | Number of individual organisms included in the grouped sample | individual organisms |
| length_min_mm | Minimum length of individual organisms in each grouped sample (bell diameter for medusae) | millimeters (mm) |
| length_max_mm | Maximum length of individual organisms in each grouped sample (bell diameter for medusae) | millimeters (mm) |
| vol_ml | Total volume of all organisms in grouped sample | milliliters (mL) |
| notes | Notes about the sample or measurements | unitless |
| wet_weight_g | Total weight of all organisms in grouped sample upon thawing | grams (g) |
| dry_weight_g | Total weight of all organisms in grouped sample after drying at 60°C | grams (g) |
| afdw_perc_of_dw | Ash-free dry weight as a percentage of the dry weight (material lost after combustion at 500°C) | percent (%) |
| ash_perc_of_dw | Ash percentage of the dry weight (material retained after combustion at 500°C) | percent (%) |
| Dataset-specific Instrument Name | Sercon Europa ANCA-GSL elemental analyzer |
| Generic Instrument Name | Elemental Analyzer |
| Dataset-specific Description | Sercon Europa ANCA-GSL elemental analyzer interfaced to a Sercon Europa 20-20 IRMS (Sercon Ltd., Cheshire, United Kingdom): 70 samples were analyzed for C and N contents and stable isotope compositions using this EA-IRMS system. |
| Generic Instrument Description | Instruments that quantify carbon, nitrogen and sometimes other elements by combusting the sample at very high temperature and assaying the resulting gaseous oxides. Usually used for samples including organic material. |
| Dataset-specific Instrument Name | Elementar vario MICRO cube elemental analyzer |
| Generic Instrument Name | Elemental Analyzer |
| Dataset-specific Description | Elementar vario MICRO cube elemental analyzer (Elementar Analysensysteme GmbH, Langenselbold, Germany) interfaced to a Sercon Europa 20-20 isotope ratio mass spectrometer (Sercon Ltd., Cheshire, United Kingdom): 70 samples were analyzed for C and N contents and stable isotope compositions using this EA-IRMS system. |
| Generic Instrument Description | Instruments that quantify carbon, nitrogen and sometimes other elements by combusting the sample at very high temperature and assaying the resulting gaseous oxides. Usually used for samples including organic material. |
| Dataset-specific Instrument Name | Elementar vario EL cube elemental analyzer |
| Generic Instrument Name | Elementar Vario EL Cube elemental analyzer |
| Dataset-specific Description | Elementar vario EL cube elemental analyzer interfaced to an Elementar VisION IRMS (Elementar Analysensysteme GmbH, Langenselbold, Germany): 527 samples were analyzed for C and N contents and stable isotope compositions using this EA-IRMS system. |
| Generic Instrument Description | A laboratory instrument used for quantifying organic elements. It can measure C, H, N and S and optionally O, Cl and TIC. It was first developed in 2006 as a successor to the vario EL III. It uses a high-temperature combustion unit that is able to complete sample digestion at up to 1200 deg C (or 1800 deg C at the point of combustion when tin foil is used) and a jet injection of oxygen directly to the sample during combustion. Separation of gas components are performed on up to 3 gas-selective columns which trap gases until they are heated up and the prior gas peak has reached the baseline during detection. It uses a Thermal Conductivity Detector (TCD) as standard. An infrared (IR) detector for sulfur and oxygen and electrochemical detector for chlorine are optionally available. The instrument can measure C / N elemental ratios of up to 12,000:1 and provides an elemental detection limit of < 40 ppm (TCD). |
| Dataset-specific Instrument Name | Sercon Europa 20-20 IRMS |
| Generic Instrument Name | Isotope-ratio Mass Spectrometer |
| Dataset-specific Description | Sercon Europa ANCA-GSL elemental analyzer interfaced to a Sercon Europa 20-20 IRMS (Sercon Ltd., Cheshire, United Kingdom): 70 samples were analyzed for C and N contents and stable isotope compositions using this EA-IRMS system. |
| Generic Instrument Description | The Isotope-ratio Mass Spectrometer is a particular type of mass spectrometer used to measure the relative abundance of isotopes in a given sample (e.g. VG Prism II Isotope Ratio Mass-Spectrometer). |
| Dataset-specific Instrument Name | Multiple Opening/Closing Net and Environmental Sensing System (MOCNESS) |
| Generic Instrument Name | MOCNESS |
| Dataset-specific Description | Net system used to collect samples: samples were collected includes five nets with 1m2 opening and 333um mesh, and five with 4m2 opening and 1000um mesh. |
| Generic Instrument Description | The Multiple Opening/Closing Net and Environmental Sensing System or MOCNESS is a family of net systems based on the Tucker Trawl principle. There are currently 8 different sizes of MOCNESS in existence which are designed for capture of different size ranges of zooplankton and micro-nekton Each system is designated according to the size of the net mouth opening and in two cases, the number of nets it carries. The original MOCNESS (Wiebe et al, 1976) was a redesigned and improved version of a system described by Frost and McCrone (1974). (from MOCNESS manual) |
| Dataset-specific Instrument Name | Mettler Toledo MS105 Analytical Balance |
| Generic Instrument Name | scale or balance |
| Dataset-specific Description | Used to measure wet weights, dry weights, and ash weights |
| Generic Instrument Description | Devices that determine the mass or weight of a sample. |
| Dataset-specific Instrument Name | Mettler Toledo WXTS3DU Microbalance |
| Generic Instrument Name | scale or balance |
| Dataset-specific Description | Used to weigh samples for stable isotope analysis |
| Generic Instrument Description | Devices that determine the mass or weight of a sample. |
| Website | |
| Platform | R/V Sikuliaq |
| Start Date | 2022-03-01 |
| End Date | 2022-03-12 |
| Description | See more information at R2R: https://www.rvdata.us/search/cruise/SKQ202204S |
| Website | |
| Platform | R/V Sikuliaq |
| Start Date | 2023-02-16 |
| End Date | 2023-03-01 |
| Description | See more information at R2R: https://www.rvdata.us/search/cruise/SKQ202303S |
| Website | |
| Platform | R/V Sally Ride |
| Start Date | 2023-08-09 |
| End Date | 2023-08-21 |
| Description | See more information at R2R: https://www.rvdata.us/search/cruise/SR2317 |
| Website | |
| Platform | R/V Marcus G. Langseth |
| Start Date | 2022-07-18 |
| End Date | 2022-07-30 |
NSF Award Abstract:
Marine plankton form the base of most ocean food webs that support valuable fisheries. This highly diverse and complex community is composed of organisms that drift with ocean currents. Planktonic organisms remain understudied: they are difficult to sample given that their sizes span more than six orders of magnitude from less than one micron to meters. Yet, understanding how these communities respond to climate change, and ultimately how these responses affect valuable fisheries, and therefore food security, is critical. Because many ecological and physiological processes are dictated by relative size, the theory of size spectra (i.e., the relationship between size and organism abundance as it drives ecosystem properties such as food webs) provides a valuable framework for forecasting climate change impacts on marine ecosystems. A deeper understanding of the scope and nature of variability in size spectra under contrasting environmental conditions is needed. The dynamic, highly productive northern California Current off Oregon and Washington, during the summer and winter seasons, produces a patchwork of oceanographic conditions including those associated with hypoxia and ocean acidification. This study is sampling the plankton communities in this region to investigate how gradients of temperature, nutrients, dissolved oxygen, and pH conditions impact size spectra. The broader impacts include the training of students, building scientific resources, and outreach to broader communities. Undergraduate and graduate students are being trained in oceanography, field research and new technologies. The automated image analysis pipeline developed as part of the project is openly accessible to the oceanographic community and the image data are available through the novel Global Plankton Imagery Library, an open-access repository for plankton imagery. Size spectra data from this study are shared directly with ecosystem modelers. The project’s flagship outreach activity is the collaboration with the Sitka Center for Art and Ecology and the hosting of an Artist-At-Sea Program. A professional artist is competitively selected to join the research cruises and to create artistic products that give a unique voice to oceanographic research and the organisms under study. The artwork is being assembled into a traveling public Art Exhibit with planned displays at the Sitka Center, Oregon State University’s Hatfield Marine Science Center, University of Oregon’s Charleston Marine Life Center and centers located in underserved coastal communities. Finally, imagery data from the project are being shared via the Plankton Portal, a public website developed in partnership with the Citizen Science Alliance’s Zooniverse, that invites citizen scientists to participate in classifying plankton images.
The coupling of in situ plankton imagery and morphometric data allows quantifying scales of variation in plankton size spectra as well as testing predictions of how changes in environmental conditions (notably, temperature, nutrients, oxygen, pH) correlate with shifts in size spectra to reveal functional consequences to the food web. Plankton size spectra are being compared across environmental conditions by sampling in a habitat with steep environmental gradients and during two contrasting seasons. Planktonic organisms spanning 10 orders of magnitude in biomass are sampled using two complementary high-resolution imaging systems: the In Situ Ichthyoplankton Imaging System (ISIIS) and the Laser In-Situ Scattering and Transmissometry (LISST) particle imager. High-throughput image analysis software is used to create size distributions together with taxonomic classification. Depth-discrete meso-zooplankton samples are collected in parallel to examine community shifts in carbon, obtain length-to-carbon conversions and calibrate image data. The normalized biomass size spectra computed from the image data are tested for deviations from expected patterns. The plankton collections are also being analyzed for diet and reproductive status of gelatinous zooplankton, and diet and daily growth rate of representative larval fishes. These two groups have been historically understudied yet play central roles in ecosystem function. The data are being used to examine how these organisms are impacted by environmental conditions, and how they affect plankton size spectra. This study is foundational to the understanding of marine ecosystems within the context of climate change.
This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
| Funding Source | Award |
|---|---|
| NSF Division of Ocean Sciences (NSF OCE) | |
| NSF Division of Ocean Sciences (NSF OCE) |