Dissolved and total organic carbon concentrations of seawater collected in the northwestern Atlantic in 2024 during three cruises aboard the Atlantic Explorer (AE2412, AE2426b, AE2427)

Website: https://www.bco-dmo.org/dataset/986721
Data Type: Cruise Results
Version: 1
Version Date: 2025-11-13

Project
» Collaborative Research: Quantifying the role of microbial extracellular vesicles in marine dissolved organic matter production and consumption (VesicleDOM)
ContributorsAffiliationRole
Longnecker, KristaWoods Hole Oceanographic Institution (WHOI)Principal Investigator
Gerlach, Dana StuartWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
Data on the concentration of dissolved organic carbon and total organic carbon provide the environmental context for us to understand the role that extracellular vesicles play in marine organic carbon cycling. These data are from discrete seawater samples collected from Niskin bottles or from the underway systems during three cruises (AE2412, AE2426b, AE2427) conducted in 2024. All cruises were in the northwestern Atlantic Ocean. Seawater was whole seawater for total organic carbon or 0.2 uM-filtered seawater for dissolved organic carbon. Samples were analyzed by high temperature combustion. The samples were collected and processed by Krista Longnecker of Woods Hole Oceanographic Institution.


Coverage

Location: Northwestern Atlantic Ocean
Spatial Extent: N:40.67267 E:-64.00283 S:31.01117 W:-70.734167
Temporal Extent: 2024-04-06 - 2024-11-25

Methods & Sampling

Seawater was collected from Niskin bottles or the ship’s underway system. Samples were processed to obtain the concentrations of dissolved organic carbon and total organic carbon. The seawater for total organic carbon (TOC) was aliquoted directly into a combusted glass vial. For dissolved organic carbon (DOC), seawater was filtered with a 0.2 µM Omnipore filter (Whatman) mounted in a Teflon filter holder into a combusted glass vial. Both types of samples were acidified to pH~3 with concentrated hydrochloric acid (HCl) and stored at 4°C until analysis with a Shimadzu TOC-L. Blanks (MilliQ water) and standard curves with potassium hydrogen phthalate were interspersed into the sample runs. The coefficient of variability between replicate injections was <1%. Comparisons to standards provided by Prof. D. Hansell (University of Miami) were made daily.


BCO-DMO Processing Description

- Imported data from source file "Longnecker_NPOCdata.2025.08.20.xlsx" into the BCO-DMO data system.
- Combined the date and time columns into a single ISO datetime UTC value
- Combined the latitude degrees and latitude minutes into a single latitude in decimal degrees
- Combined the longitude degrees and longitude minutes into a single longitude in decimal degrees


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Data Files

File
986721_v1_npoc_nw_atlantic.csv
(Comma Separated Values (.csv), 4.05 KB)
MD5:44724eb00251b78ccdbb95bb053e19f9
DOC and TOC from northwestern Atlantic, both profile and underway sampling. Primary data file for dataset ID 986721, version 1

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Parameters

ParameterDescriptionUnits
Cruise

Cruise number on R/V Atlantic Explorer

dimensionless
ISO_DateTime_UTC

Date and Time of sampling in GMT (UTC) time zone

unitless
Latitude

Latitude of sample collection

decimal degrees
Longitude

Longitude of sample collection

decimal degrees
Cast

Consecutive cast number

dimensionless
Depth

Depth

meters (m)
Source

Sampling method used for water collection, either 'profile' or 'underway'

dimensionless
SampleType

Non-purgeable organic carbon sample type, either 'DOC' = filtered seawater, or 'TOC' = whole seawater

dimensionless
NPOC

Non-purgeable organic carbon measurement

micromolar (uM)


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Instruments

Dataset-specific Instrument Name
Niskin bottles
Generic Instrument Name
Niskin bottle
Dataset-specific Description
Seawater was collected from Niskin bottles or the ship’s underway system.
Generic Instrument Description
A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc.

Dataset-specific Instrument Name
underway water system
Generic Instrument Name
Pump - Surface Underway Ship Intake
Dataset-specific Description
Seawater was collected from Niskin bottles or the ship’s underway system.
Generic Instrument Description
The 'Pump-underway ship intake' system indicates that samples are from the ship's clean water intake pump. This is essentially a surface water sample from a source of uncontaminated near-surface (commonly 3 to 7 m) seawater that can be pumped continuously to shipboard laboratories on research vessels. There is typically a temperature sensor near the intake (known as the hull temperature) to provide measurements that are as close as possible to the ambient water temperature. The flow from the supply is typically directed through continuously logged sensors such as a thermosalinograph and a fluorometer. Water samples are often collected from the underway supply that may also be referred to as the non-toxic supply. Ideally the data contributor has specified the depth in the ship's hull at which the pump is mounted.

Dataset-specific Instrument Name
Shimadzu TOC-L
Generic Instrument Name
Shimadzu TOC-L Analyzer
Dataset-specific Description
Both DOC and TOC samples were measured with a Shimadzu TOC-L analyzer.
Generic Instrument Description
A Shimadzu TOC-L Analyzer measures DOC by high temperature combustion method. Developed by Shimadzu, the 680 degree C combustion catalytic oxidation method is now used worldwide. One of its most important features is the capacity to efficiently oxidize hard-to-decompose organic compounds, including insoluble and macromolecular organic compounds. The 680 degree C combustion catalytic oxidation method has been adopted for the TOC-L series. http://www.shimadzu.com/an/toc/lab/toc-l2.html


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Deployments

AE2412

Website
Platform
R/V Atlantic Explorer
Start Date
2024-04-25
End Date
2024-04-28

AE2426b

Website
Platform
R/V Atlantic Explorer
Start Date
2024-11-14
End Date
2024-11-20
Description
Transit cruise from Woods Hole, MA to Bermuda

AE2427

Website
Platform
R/V Atlantic Explorer
Start Date
2024-11-20
End Date
2024-11-26


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Project Information

Collaborative Research: Quantifying the role of microbial extracellular vesicles in marine dissolved organic matter production and consumption (VesicleDOM)

Coverage: Laboratory; Vineyard Sound, MA, USA; Bermuda Atlantic Time Series Station


NSF Award Abstract:
Microbial production and consumption of organic carbon play critical roles in the marine food web and global carbon cycling. Bacteria release organic matter in a variety of chemical forms and in diverse contexts, ranging from individual molecules to small aggregates and larger biological particles. In recent years we have come to understand that most, if not all, marine microbes release nanoscale structures called extracellular vesicles from their surfaces. These discrete particles, which are abundant in the oceans, are capable of transporting multiple classes of organic molecules between organisms and can serve as a potential nutrient source for other microbes. Extracellular vesicles thus represent a potentially important component of marine microbial food webs, but the magnitude and dynamics of this contribution are unknown. Further, the packaging of material within vesicles may influence the accessibility of this organic material as compared with truly ‘dissolved’ substances to different groups of marine organisms, potentially biasing nutrient exchanges. Broader impacts of this work is providing hands-on research experiences for female undergraduate students - including those from groups historically underrepresented in STEM fields - and training in data analysis tools.

The goal of this project is to advance the understanding of the role that extracellular vesicles play in marine dissolved organic carbon pools and microbial food webs. To determine the contribution of vesicles to organic matter release by marine microbes, the investigators are quantifying the fraction of excreted carbon and nitrogen associated with vesicles released by multiple marine cyanobacteria and heterotrophs. The project is examining how vesicles are ‘consumed’ by heterotrophs to calculate a mass balance of vesicle utilization and produce detailed gene expression data to explore how cells respond to the presence of vesicles. Finally, experiments with coastal and oligotrophic marine communities are providing insights into which organisms utilize vesicles in the field, and whether they are broadly accessible to all microbes or are instead preferentially consumed by a subset of microbes. Collectively, these experiments are opening up a new area of research into the mechanisms underlying the microbial loop and provide foundational insights into the roles of extracellular vesicles in ocean ecosystems.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)
NSF Division of Ocean Sciences (NSF OCE)

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