MOCNESS and environmental data from R/V Sally Ride cruise SR2407 and SR2408 in the Gulf of California in May 2024

Website: https://www.bco-dmo.org/dataset/996661
Data Type: Cruise Results
Version: 1
Version Date: 2026-04-10

Project
» Collaborative Research: Metabolic habitat barriers imposed on tropical diel vertical migrators (Metabolism in Diel Migrators)
ContributorsAffiliationRole
Maas, Amy ElizabethBermuda Institute of Ocean Sciences (BIOS)Co-Principal Investigator
Mickle, AudreyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
In May 2024, the R/V Sally Ride cruises SR2407 and SR2408 were conducted in the Gulf of California. The MOCNESS tow nets were deployed from May 4th to May 18th. Files from MOCNESS net tows were produced by LVpki software and include additional environmental data from the CTD. This dataset includes environmental sensor data—pressure, in situ temperature, potential temperature (θ), salinity, potential density anomaly (σ), and dissolved oxygen concentration (ml L⁻¹)—alongside MOCNESS net data (net angle, volume filtered, and trip information) and associated calibration parameters. Raw environmental data are provided in .hex files with corresponding .xmlcon configuration files, while processed .pro files contain synchronized net and environmental data.


Coverage

Location: Gulf of California Guaymas Basin and Carmen Basin
Spatial Extent: N:27.50544 E:-110.367 S:26.19667 W:-111.3148
Temporal Extent: 2024-05-04 - 2024-05-18

Methods & Sampling

In May 2024, the R/V Sally Ride cruises SR2407 and SR2408 were conducted in the Gulf of California. The MOCNESS tow nets were deployed from May 4th to May 18th. MOCNESS sampling protocols included the standard vertical 0-1000 m day night pairs as well as unpaired shorter interval tows (ranging in depths focused on 450-200 m) to capture a more detailed vertical resolution. Finally, a subset of tows were conducted in a horizontal fashion where the net was maintained at a constant depth +/- 5 m to sample communities across midwater oxygen features.

After collection different samples were preserved in formalin for later Zooscan analysis, dried as five size fractionated biomass (200, 500, 1000, 2000, 5000) samples, or preserved in ethanol for metabarcoding analysis. 


Data Processing Description

Environmental data was processed by the LVpki software aboard ship.


BCO-DMO Processing Description

- Loaded 13 MOCNESS .PRO files (MOC1_01A through MOC13_13A) in regex-csv format with whitespace delimiter, using filename as resource name
- Header row taken from row 1; rows beginning with "%" skipped; missing values defined as -9999.0000, -9999.00, and -99.0
- Captured metadata from skipped comment lines into columns: tow, Date, Temperature Probe, Pressure Probe, Tranmissometer, Conductivity Probe, Oxygen Probe, Fluorometer, Irradiance Probe, and Flow Meter Calibration; capture_skipped_rows_join set to false to preserve separate values per file
- Concatenated all 13 resources into single resource moc_all, mapping all fields by identical name; added file_name column from source filename
- Renamed fields: CTDDEPTH(M) to CTDDEPTH (removing unit suffix), spaces replaced with underscores in probe and calibration column names, file_name renamed to raw_data_filename
- Converted Date field from format %m/%d/%Y to %Y-%m-%d (date type)
- Split tow column using regex pattern capturing tow number, vessel name, and cruise ID into fields tow, vessel, and cruiseID
- Applied find/replace on vessel field: "Sally Ride" replaced with "R/V Sally Ride"
- Renamed resource moc_all to 996661_v1_mocness_files
- Converted time field (decimal day of year, year 2024) to ISO_DateTime_UTC in format %Y-%m-%dT%H:%M:%S (datetime type)
- Reordered fields placing vessel, cruiseID, tow, raw_data_filename, ISO_DateTime_UTC, lat, lon first, followed by measurement and instrument metadata fields
- Exported file as 996661_v1_mocness_files.csv


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Parameters

ParameterDescriptionUnits
vessel

Vessel

unitless
cruiseID

Cruise identifier

unitless
tow

Tow identifier

unitless
raw_data_filename

Name of raw data files

unitless
ISO_DateTime_UTC

Datetime of sampling in ISO 8601 format

unitless
lat

Latitude of sample collection, positive is North

decimal degrees
lon

Longitude of sample collection, negative is West

decimal degrees
time

Decimal day of year

unitless
pres

Pressure

decibars (dbar)
echo

Altimeter

m
temp

Temperature of water

degrees Celsius
theta

Potential temperature

degrees Celsius
sal

Salinity

psu
sigma

Potential density anomaly

kg/m3
angle

Net angle

degrees
flow

Measured flow counts of the net

unitless
hzvel

Net horizontal velocity

m/min
vtvel

Net vertical velocity

m/min
vol

Volume filtered in the net

m3
net

Net number

unitless
fluor

Fluorescence

rfu
ptran

Percent transmission

%
oxygen

Dissolved Oxygen

ml/L
IrC

Irradiance Temperature

degrees Celcius
Irrad

Irradiance

W/m2
GPSTIME

GPS time

unitless
CTDDEPTH

Depth

m
voln2

Volume filtered from second flow meter

m3
RSP

Net response indicator

unitless
Date

Date of tow

unitless
Temperature_Probe

Temperature probe number

unitless
Conductivity_Probe

Conductivity probe number

unitless
Pressure_Probe

Pressure probe number

unitless
Oxygen_Probe

Oxygen probe number

unitless
Transmissometer

Transmissometer

unitless
Fluorometer

Fluorometer

unitless
Irradiance_Probe

Irradiance probe number

unitless
Flow_Meter_Calibration

Flow Meter Calibration

m/count


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Instruments

Dataset-specific Instrument Name
MOCNESS system equipped with SIO electronics
Generic Instrument Name
CTD MOCNESS
Dataset-specific Description
Instrument Description: Environmental data was collected by a MOCNESS system equipped with SIO electronics (seabird 9 aboard, with connection through seabird 11 deck box). Sensors included Temperature, Pressure, Conductivity, Oxygen and a Fluorometer.  Net itself was a 1-m2 MOCNESS equipped with 10 nets with 222 micron mesh.
Generic Instrument Description
The CTD part of the MOCNESS includes 1) a pressure (depth) sensor which is a thermally isolated titanium strain gauge with a standard range of 0-5000 decibars full scale, 2) A Sea Bird temperature sensor whose frequency output is measured and sent to the surface for logging and conversion to temperature by the software in the MOCNESS computer (The system allows better than 1 milli-degree resolution at 10 Hz sampling rate), and 3) A Sea Bird conductivity sensor whose output frequency is measured and sent to the surface for logging and conversion to conductivity by the software in the computer (The system allows better than 1 micro mho/cm at 10 Hz sampling rate). The data rate depends on the speed of the computer and the quality of the cable. With a good cable, the system can operate at 2400 baud, sampling all variables at 2 times per second. One sample every 4 seconds is the default, although the hardware can operate much faster. (From The MOCNESS Manual)

Dataset-specific Instrument Name
MOCNESS
Generic Instrument Name
MOCNESS
Dataset-specific Description
Instrument Description: MOCNESS sampling protocols included the standard vertical 0-1000 m day night pairs as well as unpaired shorter interval tows (ranging in depths focused on 450-200 m) to capture a more detailed vertical resolution.
Generic Instrument Description
The Multiple Opening/Closing Net and Environmental Sensing System or MOCNESS is a family of net systems based on the Tucker Trawl principle. There are currently 8 different sizes of MOCNESS in existence which are designed for capture of different size ranges of zooplankton and micro-nekton Each system is designated according to the size of the net mouth opening and in two cases, the number of nets it carries. The original MOCNESS (Wiebe et al, 1976) was a redesigned and improved version of a system described by Frost and McCrone (1974). (from MOCNESS manual) 


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Deployments

SR2407

Website
Platform
R/V Sally Ride
Start Date
2024-05-02
End Date
2024-05-11
Description
Project: Metabolic habitat barriers imposed on tropical diel vertical migrators

SR2408

Website
Platform
R/V Sally Ride
Start Date
2024-05-11
End Date
2024-05-21
Description
Project: Metabolic habitat barriers imposed on tropical diel vertical migrators


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Project Information

Collaborative Research: Metabolic habitat barriers imposed on tropical diel vertical migrators (Metabolism in Diel Migrators)

Coverage: Guaymas Basin, Gulf of California, Mexico


NSF Award Abstract:
This project is seeking to define physiologically-accessible habitat for animals faced with changing ocean conditions. Many oceanic animals migrate daily from warm, oxygenated surface waters at night to deep, cold and hypoxic waters during the daytime, and these migrations play critical roles in oceanic ecology and biogeochemical cycles. Over their depth ranges, migrators face very different ecological and environmental demands that may lead to unique traits that in turn, influence how they respond to a warming ocean where oxygen minimum zones are also expanding. This study is combining ecological and physiological approaches during two expeditions to the Gulf of California. The investigators are measuring metabolic traits in a diverse suite of ocean animals that exhibit vertical migration to determine possible roles of oxygen and temperature in triggering changes in vertical and latitudinal distribution. They are also measuring species distributions in relation to environmental oxygen and temperature to determine ecologically-relevant thresholds of environmental tolerance. The project involves training and experiential learning for graduate and undergraduate students. In addition, engagement with educational experts and artists will generate media and lesson plans to support STEM education and Next Generation Science Standards. These activities leverage the Bermuda Institute of Ocean Sciences’ Databytes and Mid-Atlantic Robotics IN Education (MARINE) programs, designed to improve ocean literacy and technological fluency and targeting students from groups traditionally underrepresented in science. Project products also include a new level for a video game that introduces the concepts of how oxygen minimum zones influence animal distribution.

Climate change is driving poleward shifts in the distributions of marine animals. These shifting edges of the range of species habitats are often interpreted as a manifestation of oxygen limitation that is presumed to occur at high water temperatures due to a mismatch between physiological oxygen supply and thermodynamically-driven oxygen demand. However, recent work by the investigators suggests that oxygen supply has evolved to meet demand regardless of temperature. These opposing views predict very different thermal thresholds for range expansion. In this study, the investigators are employing a relationship between metabolic traits to infer a unique temperature sensitivity in tropical diel vertical migrators and to map their metabolically-available habitat in the Eastern Pacific. Specifically, the investigators propose that oxygen supply does not limit metabolism in tropical migrators, even in the oxygen minimum zone. Instead, they contend that the active metabolic rate for tropical migrators is highly sensitive to temperature, and that this creates a barrier to range expansion where the aerobic scope for growth and reproduction is insufficient in cold waters. This temperature sensitivity will also allow migrators to expand poleward to newly available habitat following modest warming, rather than simply being extirpated from their native tropical habitat by excess warming. This hypothesis, if supported, would transform our mechanistic understanding of species’ responses to climate change, amend our predictions of range expansion, and modify our assessment of migrator contributions to oceanic biogeochemical cycles in a warmer future ocean.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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