http://lod.bco-dmo.org/id/dataset/999304
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2026-05-22
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Sessile organisms biomass on settlement tiles deployed as part of fish exclusion/exposure experiments in Coastal Costa Rica and Panama in 2024
2026-05-22
publication
2026-05-22
revision
BCO-DMO Linked Data URI
2026-05-22
creation
http://lod.bco-dmo.org/id/dataset/999304
Mark E. Torchin
Smithsonian Tropical Research Institute
principalInvestigator
Carmen Schlöder
Smithsonian Tropical Research Institute
principalInvestigator
Andrew Sellers
McGill University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Torchin, M. E., Sellers, A., Schlöder, C. (2026) Sessile organisms biomass on settlement tiles deployed as part of fish exclusion/exposure experiments in Coastal Costa Rica and Panama in 2024. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2026-05-22 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/999304 [access date]
Dataset Description: <p>See "Related Datasets" section for the other datasets in this study describing the sessile organisms on settlement tiles deployed during fish exclusion/exposure experiments.</p> Methods and Sampling: <p>We conducted 4-month fish exclusion/exposure experiments during the upwelling (December-March) and non-upwelling seasons (July-October) of 2024 across 10 sites in Costa Rica and Panama. At each site, we deployed 35 experimental units belonging to one of five treatments: open, caged, partial, cage-control and cage-exposed. Each experimental unit consisted of two 10-cm square PVC horizontal settlement plates mounted flush with each other on a 0.4-cm thick steel threaded stud. One plate faced the surface (top-plate) while the other faced the bottom (bottom-plate). The stud was inserted through a 0.4-cm hole drilled into the middle of each plate, and fixed to a 1.3-cm diameter threaded PVC cap using two stainless-steel nuts. The threaded cap was then screwed to a PVC male adapter fixed to one end of a 20-cm length of 1.3-cm diameter PVC tubing.</p>
<p>Treatments included:<br />
(1) a ‘caged’ treatment where fish larger than 5cm were excluded using a 1” vexar mesh.<br />
(2) an ‘open’ treatment, which had no cage to limit the access of fish<br />
(3) a procedural control or ‘partial’ treatment which was like the caged treatments, but lacked the top and bottom cage panels, allowing access of fish to sessile organisms attached to the plates, while controlling for alterations in water flow imposed by the cages.</p>
<p>These 5 units of each of those 3 treatments were retrieved after 4 months. Each plate was weighed, and the exposed surface of each plate was photographed. We then used a grid to quantify percent cover by identifying organisms growing under 50 random points to the lowest possible taxonomic level under a dissecting microscope. We also identified all organisms growing on each plate to the lowest taxonomic level possible to quantify richness.</p>
<p>In addition to our main experiment (caged vs. open vs. partial), we included two additional treatments to measure consumer effects on fouling assemblages during a 24-hr time-span. After the 4-month experimental period, we retrieved 10 randomly selected caged treatments. We removed the cage for each unit, then weighed and photographed the exposed faces of top and bottom plates. We then reassembled half of those units (n=5; ‘cage control’), and left the other half without cages (n=5; cage-exposed). The ten units (5 cage control and 5 cage exposed) were placed back on the reefs and recovered after 24-hours to be photographed and measured once again. These treatments were not examined under dissecting microscopes.</p>
<p>This dataset reports the biomass of each settlement tile. The wet weight of each settlement tile was measured in grams using a digital scale following retrieval at the end of each experimental period.&nbsp;<br />
<br />
Additional location description: The experiments were installed in coral reefs dominated by Pocillopora sp. coral at a depth of about 5m. We focused on 4 regions: Santa Elena Bay and Gulf of Papagayo in Costa Rica, and the Gulfs of Panama and Chiriqui in the Republic of Panama.&nbsp;</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-2350541 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=2350541
onGoing
Mark E. Torchin
Smithsonian Tropical Research Institute
Unit 9100 Box 0948
DPO AA
34002-9998
Panama
torchinm@si.edu
pointOfContact
Carmen Schlöder
Smithsonian Tropical Research Institute
Smithsonian Tropical Research Institute
Panama City
Panama Province
Panama
SchloederC@si.edu
pointOfContact
Andrew Sellers
McGill University
andrew.sellers@mail.mcgill.ca
pointOfContact
asNeeded
Dataset Version: 1
Unknown
plate
country
region
site
season
date
topBottom
treatment
bmass1
bmass2
lat
lon
depth
Dissecting microscopes
theme
None, User defined
sample description
Country name
region
site
season
date
treatment
weight
latitude
longitude
depth
featureType
BCO-DMO Standard Parameters
Microscope - Optical
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Collaborative Research: RAPID: Turning up the heat: El Nino warming effects on top-down control of Tropical Eastern Pacific reef communities
https://osprey.bco-dmo.org/project/944223
Collaborative Research: RAPID: Turning up the heat: El Nino warming effects on top-down control of Tropical Eastern Pacific reef communities
<p>NSF Award Abstract:</p>
<p>Species interactions are key drivers shaping marine biodiversity. Recent marine studies demonstrate that predation can be stronger at lower latitudes where water temperatures are higher. With a changing climate, it is important to resolve how environmental forces intensify or moderate consumer interactions and change the distribution and abundance of marine species. Researchers are employing a rapid research response to measure how an extreme event, the 2023-2024 El Niño, will alter consumer interactions on Tropical Eastern Pacific (TEP) coral reefs. Following up on two consecutive years of experimental data during non-El Niño conditions, they will be able to compare how an extreme event and increased ocean temperatures alter predation and herbivory rates and how this in turn influences marine biodiversity and potential invasion by non-native species. The project builds international research and education by training early-career researchers in marine science including those from under-represented groups. The project develops partnerships and fosters collaboration through an international network, which facilitates shared and integrated marine biosecurity solutions across the Americas, informing management of invasive marine species.</p>
<p>Growing evidence suggests that the intensity of interspecific interactions increases at low latitudes. Recent studies along both coasts of the Americas indicate that the strength of consumer effects across latitude increases with temperature, consistent with the metabolic theory of ecology. The hypothesized impact of ocean warming on future trends in top-down control of marine communities predicts that increasing ocean temperatures will increase top-down control by consumers, but the extent to which this will occur in the tropics remains uncertain. The strong spatial and seasonal variation in upwelling that affect both temperature and nutrients in the Tropical Eastern Pacific (TEP) make it an ideal region to test how changes in environmental conditions influence trophic interactions and marine community dynamics. For the past two years, researchers conducted consumer exclusion experiments on sessile marine invertebrate communities at ten coral reef sites, distributed along a gradient of upwelling activity in Panama and Costa Rica. By comparing replicated caged (predator exclusion) and open settlement panels at each site along this gradient, this experiment examines the role of temperature and productivity on top-down control by consumers. Here, researchers are extending the duration of this work to utilize the current El Niño as a natural experiment to measure how this extreme event will alter consumer interactions on TEP reefs. The El Niño event forecasted for 2023-2024 (NOAA 2023) is predicted to (a) cause extreme increases in water temperature and (b) alter the intensity and duration of upwelling events. Using two complementary experiments to sequentially test the strength of consumer interactions, (a) 4-month predator exclusions and (b) short-term predator exposure experiments, the project tests the hypothesis that increased temperature and decreased upwelling activity linked to El Niño will increase consumer effects in the TEP. Repeating previous experiments during the current El Niño, provides a comparison for how changing temperature and productivity regimes influence consumer effects on the reef communities. By focusing these experiments in a thermally dynamic region of the tropics, this research directly tests for temperature regulation of top-down processes without the confounds of latitude, while also examining the bottom-up consequences of declining productivity due to weakened upwelling activity.</p>
<p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p>
Turning up the heat
largerWorkCitation
project
eng; USA
oceans
-85.866
-79.016
7.399
10.948
2024-05-01
2024-12-07
Panama and Costa Rica
0
BCO-DMO catalogue of parameters from Sessile organisms biomass on settlement tiles deployed as part of fish exclusion/exposure experiments in Coastal Costa Rica and Panama in 2024
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/1002335.rdf
Name: plate
Units: unitless
Description: <p>ID number for individual settlement tiles</p>
http://lod.bco-dmo.org/id/dataset-parameter/1002336.rdf
Name: country
Units: unitless
Description: <p>Country where experiment was carried out: Panama or Costa Rica</p>
http://lod.bco-dmo.org/id/dataset-parameter/1002337.rdf
Name: region
Units: unitless
Description: <p>Region where experiments were performed</p>
http://lod.bco-dmo.org/id/dataset-parameter/1002338.rdf
Name: site
Units: unitless
Description: <p>Sites where experiments were performed</p>
http://lod.bco-dmo.org/id/dataset-parameter/1002339.rdf
Name: season
Units: unitless
Description: <p>season when experiment took place (nu=wet, u=dry)</p>
http://lod.bco-dmo.org/id/dataset-parameter/1002340.rdf
Name: date
Units: unitless
Description: <p>date when experiment took place</p>
http://lod.bco-dmo.org/id/dataset-parameter/1002341.rdf
Name: topBottom
Units: unitless
Description: <p>Top facing or bottom facing settlement panel</p>
http://lod.bco-dmo.org/id/dataset-parameter/1002342.rdf
Name: treatment
Units: unitless
Description: <p>Type of treatment: open, cage, partial, cage exposure, cage control</p>
http://lod.bco-dmo.org/id/dataset-parameter/1002343.rdf
Name: bmass1
Units: grams (g)
Description: <p>Weight of sessile assemblage (after subtraction from the weight of the panel).</p>
http://lod.bco-dmo.org/id/dataset-parameter/1002344.rdf
Name: bmass2
Units: grams (g)
Description: <p>Weight of sessile assemblage after exposure experiment: only applies for cage exposure and cage control treatments. Weight reported after subtraction from the weight of the panel.</p>
http://lod.bco-dmo.org/id/dataset-parameter/1002345.rdf
Name: lat
Units: decimal degrees
Description: <p>Latitude of experimental site</p>
http://lod.bco-dmo.org/id/dataset-parameter/1002347.rdf
Name: lon
Units: decimal degrees
Description: <p>Longitude of experimental site</p>
http://lod.bco-dmo.org/id/dataset-parameter/1002349.rdf
Name: depth
Units: meters (m)
Description: <p>Depth of experimental site</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
https://osprey.bco-dmo.org/dataset/999304/data/download
download
onLine
dataset
<p>We conducted 4-month fish exclusion/exposure experiments during the upwelling (December-March) and non-upwelling seasons (July-October) of 2024 across 10 sites in Costa Rica and Panama. At each site, we deployed 35 experimental units belonging to one of five treatments: open, caged, partial, cage-control and cage-exposed. Each experimental unit consisted of two 10-cm square PVC horizontal settlement plates mounted flush with each other on a 0.4-cm thick steel threaded stud. One plate faced the surface (top-plate) while the other faced the bottom (bottom-plate). The stud was inserted through a 0.4-cm hole drilled into the middle of each plate, and fixed to a 1.3-cm diameter threaded PVC cap using two stainless-steel nuts. The threaded cap was then screwed to a PVC male adapter fixed to one end of a 20-cm length of 1.3-cm diameter PVC tubing.</p>
<p>Treatments included:<br />
(1) a ‘caged’ treatment where fish larger than 5cm were excluded using a 1” vexar mesh.<br />
(2) an ‘open’ treatment, which had no cage to limit the access of fish<br />
(3) a procedural control or ‘partial’ treatment which was like the caged treatments, but lacked the top and bottom cage panels, allowing access of fish to sessile organisms attached to the plates, while controlling for alterations in water flow imposed by the cages.</p>
<p>These 5 units of each of those 3 treatments were retrieved after 4 months. Each plate was weighed, and the exposed surface of each plate was photographed. We then used a grid to quantify percent cover by identifying organisms growing under 50 random points to the lowest possible taxonomic level under a dissecting microscope. We also identified all organisms growing on each plate to the lowest taxonomic level possible to quantify richness.</p>
<p>In addition to our main experiment (caged vs. open vs. partial), we included two additional treatments to measure consumer effects on fouling assemblages during a 24-hr time-span. After the 4-month experimental period, we retrieved 10 randomly selected caged treatments. We removed the cage for each unit, then weighed and photographed the exposed faces of top and bottom plates. We then reassembled half of those units (n=5; ‘cage control’), and left the other half without cages (n=5; cage-exposed). The ten units (5 cage control and 5 cage exposed) were placed back on the reefs and recovered after 24-hours to be photographed and measured once again. These treatments were not examined under dissecting microscopes.</p>
<p>This dataset reports the biomass of each settlement tile. The wet weight of each settlement tile was measured in grams using a digital scale following retrieval at the end of each experimental period.&nbsp;<br />
<br />
Additional location description: The experiments were installed in coral reefs dominated by Pocillopora sp. coral at a depth of about 5m. We focused on 4 regions: Santa Elena Bay and Gulf of Papagayo in Costa Rica, and the Gulfs of Panama and Chiriqui in the Republic of Panama.&nbsp;</p>
Specified by the Principal Investigator(s)
<p>The data was entered manually into spreadsheets. No software was used in this process.</p>
Specified by the Principal Investigator(s)
Main data table:
- Loaded biomass.csv into table "999304_v1_settlement-tile_biomass" with missing values defined as "", "nd", "NA", and "NaN"
- Converted column date from Excel serial number format to ISO date format (%Y-%m-%d)
- Stripped trailing "m" character from depth column values using find/replace so column could be typed as numeric. Units are noted in metadata "Parameters" section.
- Set column types: bmass1, bmass2, depth, lat, lon as number; date as date (%Y-%m-%d); country, plate, region, season, site, topBottom, treatment as string
- Corrected longitude values that were positive: any lon > 0 was multiplied by -1, as all values in this area should be negative
- Applied metadata updates to all columns including standard name IDs, descriptions, units, and primary parameter designations for lat, lon, and depth
- Replaced abbreviated country codes with full names: "CR" replaced with "Costa Rica" and "PAN" replaced with "Panama", as described in column metadata
- Output final table to 999304_v1_settlement-tile_biomass.csv
Supplemental file: category_list.csv
BCO-DMO data manager (Amber York) and data submitter (Andrew Sellers) collaboratively made the supplemental category list from the unique category codes used in the settlement tile datasets and corrected any typos in taxon names used. Any associated taxon names in the list were matched to registered names at the World Register of Marine Species (WoRMs) on March 2, 2026 and associated taxon Ids were included in the supplemental category list. Some name matches were ambiguous (could match more than one organism) so the data submitter Andrew modified the list to clarify which taxon name and ID each was.
Specified by BCO-DMO Data Managers
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Dissecting microscopes
Dissecting microscopes
PI Supplied Instrument Name: Dissecting microscopes Instrument Name: Microscope - Optical Instrument Short Name: Instrument Description: Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a "light microscope". Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB05/