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| Status |
Public on Nov 06, 2015 |
| Title |
The diatom Thalassiosira pseudonana grown at [normal and elevated CO2] x [normal and elevated light] |
| Organism |
Thalassiosira pseudonana |
| Experiment type |
Expression profiling by array
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| Summary |
Transcriptomic profiling of the diatom Thalassiosira pseudonana at normal and elevated CO2 levels and at normal and elevated light levels. Common reference total RNA (Agilent Quick-Amp Cy3-labeled) was used in all arrays as an internal standard.
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| Overall design |
Triplicate batch cultures grown at normal (~400ppm) and elevated (~800ppm) CO2 levels, both at i) normal or ii) elevated light levels. Samples were taken during a) exponential and b) stationary growth during all growth experiments. Result: 72 total transcriptomic measurements.
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| Contributor(s) |
Ashworth J, Orellana MV, Baliga NS |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
May 16, 2014 |
| Last update date |
Nov 08, 2020 |
| Contact name |
Justin Ashworth |
| E-mail(s) |
justin.ashworth.research@gmail.com
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| Organization name |
Institute for Systems Biology
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| Street address |
401 Terry Ave N
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| City |
Seattle |
| ZIP/Postal code |
98109 |
| Country |
USA |
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| Platforms (1) |
| GPL18682 |
Agilent-037886 thaps.gsa.exons.bd.org.RNAseq.3p.sense.60k 032798 |
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| Samples (72)
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| GSM1387837 |
normal CO2, normal light, exponential, series A, rep 1 |
| GSM1387838 |
normal CO2, normal light, exponential, series A, rep 2 |
| GSM1387839 |
normal CO2, normal light, exponential, series A, rep 3 |
| GSM1387840 |
normal CO2, normal light, exponential, series B, rep 1 |
| GSM1387841 |
normal CO2, normal light, exponential, series B, rep 2 |
| GSM1387842 |
normal CO2, normal light, exponential, series B, rep 3 |
| GSM1387843 |
elevated CO2, normal light, exponential, series A, rep 1 |
| GSM1387844 |
elevated CO2, normal light, exponential, series A, rep 2 |
| GSM1387845 |
elevated CO2, normal light, exponential, series A, rep 3 |
| GSM1387846 |
elevated CO2, normal light, exponential, series B, rep 1 |
| GSM1387847 |
elevated CO2, normal light, exponential, series B, rep 2 |
| GSM1387848 |
elevated CO2, normal light, exponential, series B, rep 3 |
| GSM1387849 |
normal CO2, normal light, stationary, series A, rep 1 |
| GSM1387850 |
normal CO2, normal light, stationary, series A, rep 2 |
| GSM1387851 |
normal CO2, normal light, stationary, series A, rep 3 |
| GSM1387852 |
normal CO2, normal light, stationary, series B, rep 1 |
| GSM1387853 |
normal CO2, normal light, stationary, series B, rep 2 |
| GSM1387854 |
normal CO2, normal light, stationary, series B, rep 3 |
| GSM1387855 |
elevated CO2, normal light, stationary, series A, rep 1 |
| GSM1387856 |
elevated CO2, normal light, stationary, series A, rep 2 |
| GSM1387857 |
elevated CO2, normal light, stationary, series A, rep 3 |
| GSM1387858 |
elevated CO2, normal light, stationary, series B, rep 1 |
| GSM1387859 |
elevated CO2, normal light, stationary, series B, rep 2 |
| GSM1387860 |
elevated CO2, normal light, stationary, series B, rep 3 |
| GSM1387861 |
normal CO2, high light, exponential, series A, rep 1 |
| GSM1387862 |
normal CO2, high light, exponential, series A, rep 2 |
| GSM1387863 |
normal CO2, high light, exponential, series A, rep 3 |
| GSM1387864 |
normal CO2, high light, exponential, series B, rep 1 |
| GSM1387865 |
normal CO2, high light, exponential, series B, rep 2 |
| GSM1387866 |
normal CO2, high light, exponential, series B, rep 3 |
| GSM1387867 |
elevated CO2, high light, exponential, series A, rep 1 |
| GSM1387868 |
elevated CO2, high light, exponential, series A, rep 2 |
| GSM1387869 |
elevated CO2, high light, exponential, series A, rep 3 |
| GSM1387870 |
elevated CO2, high light, exponential, series B, rep 1 |
| GSM1387871 |
elevated CO2, high light, exponential, series B, rep 2 |
| GSM1387872 |
elevated CO2, high light, exponential, series B, rep 3 |
| GSM1387873 |
normal CO2, high light, stationary, series A, rep 1 |
| GSM1387874 |
normal CO2, high light, stationary, series A, rep 2 |
| GSM1387875 |
normal CO2, high light, stationary, series A, rep 3 |
| GSM1387876 |
normal CO2, high light, stationary, series B, rep 1 |
| GSM1387877 |
normal CO2, high light, stationary, series B, rep 2 |
| GSM1387878 |
normal CO2, high light, stationary, series B, rep 3 |
| GSM1387879 |
elevated CO2, high light, stationary, series A, rep 1 |
| GSM1387880 |
elevated CO2, high light, stationary, series A, rep 2 |
| GSM1387881 |
elevated CO2, high light, stationary, series A, rep 3 |
| GSM1387882 |
elevated CO2, high light, stationary, series B, rep 1 |
| GSM1387883 |
elevated CO2, high light, stationary, series B, rep 2 |
| GSM1387884 |
elevated CO2, high light, stationary, series B, rep 3 |
| GSM4887854 |
normal CO2, high light, exponential, series C, rep 1 |
| GSM4887855 |
normal CO2, high light, exponential, series C, rep 2 |
| GSM4887856 |
normal CO2, high light, exponential, series C, rep 3 |
| GSM4887857 |
normal CO2, high light, stationary, series C, rep 1 |
| GSM4887858 |
normal CO2, high light, stationary, series C, rep 2 |
| GSM4887859 |
normal CO2, high light, stationary, series C, rep 3 |
| GSM4887860 |
normal CO2, normal light, exponential, series C, rep 1 |
| GSM4887861 |
normal CO2, normal light, exponential, series C, rep 2 |
| GSM4887862 |
normal CO2, normal light, exponential, series C, rep 3 |
| GSM4887863 |
normal CO2, normal light, stationary, series C, rep 1 |
| GSM4887864 |
normal CO2, normal light, stationary, series C, rep 2 |
| GSM4887865 |
normal CO2, normal light, stationary, series C, rep 3 |
| GSM4887866 |
elevated CO2, high light, exponential, series C, rep 1 |
| GSM4887867 |
elevated CO2, high light, exponential, series C, rep 2 |
| GSM4887868 |
elevated CO2, high light, exponential, series C, rep 3 |
| GSM4887869 |
elevated CO2, high light, stationary, series C, rep 1 |
| GSM4887870 |
elevated CO2, high light, stationary, series C, rep 2 |
| GSM4887871 |
elevated CO2, high light, stationary, series C, rep 3 |
| GSM4887872 |
elevated CO2, normal light, exponential, series C, rep 1 |
| GSM4887873 |
elevated CO2, normal light, exponential, series C, rep 2 |
| GSM4887874 |
elevated CO2, normal light, exponential, series C, rep 3 |
| GSM4887875 |
elevated CO2, normal light, stationary, series C, rep 1 |
| GSM4887876 |
elevated CO2, normal light, stationary, series C, rep 2 |
| GSM4887877 |
elevated CO2, normal light, stationary, series C, rep 3 |
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| Relations |
| BioProject |
PRJNA248013 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE57737_RAW.tar |
1.2 Gb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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