Dataset: Hydrothermal vent parasite species reported in published literature

Name: Records and metadata for deep-sea hydrothermal vent parasite, egg predator, and micropredator species reported in published literature.
Published: 2022-08-25
Keywords: Deep-sea, hydrothermal vents, parasites, literature, species, oceans

Cite This Dataset

DOI:10.26008/1912/bco-dmo.879266.1

Spatial Extent: N:49.76 E:70.1 S:-37.788 W:-176.568

Temporal Extent: 1979 - 2011

Project:

Trajectories in functional diversity after disturbance at vents on the East Pacific Rise (EPR Functional Diversity)

Principal Investigator:

Lauren Dykman (Woods Hole Oceanographic Institution, WHOI)

Contact:

Lauren Dykman (Woods Hole Oceanographic Institution, WHOI)

BCO-DMO Data Manager:

Karen Soenen (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2022-08-25

Restricted:

Validated:

Yes

Current State:

Final no updates expected

Records and metadata for deep-sea hydrothermal vent parasite, egg predator, and micropredator species reported in published literature.

Abstract:

A compilation of records and metadata for deep-sea hydrothermal vent parasite, egg predator, and micropredator species reported in published literature as of July 2022.

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Archival Copy

Version Date	Archive	Persistent Identifier	Date Assigned
2022-08-25	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.26008/1912/bco-dmo.879266.1	2023-05-12

Methods & Sampling

Online databases were queried for records of parasite species described or reported from deep-sea hydrothermal vent ecosystems. Deep sea hydrothermal vent sites (1055-3650m depth) from N. Pacific, S. Pacific, N. Atlantic, and Indian Oceans.

All papers reporting vent parasites were read and their citations searched for mention of additional species. Data on the parasite and host were recorded from the publication, including collection metadata and taxonomic details of the host and parasite.

Data Processing Description

BCO-DMO Processing Notes:
*Converted , to ; in text to comply with database requirements.

Data Files

File
parasites_vent_literature.csv (Comma Separated Values (.csv), 41.15 KB) MD5:e24ffc2ca70e453032228dbb504c15d4 Primary data file for dataset ID 879266
parasites_vent_literature.csv (Comma Separated Values (.csv), 41.01 KB) MD5:783903437b6d294357bd2b0ecb2a59f3 Primary data table for dataset 879266.

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-1829773

Deployments

None available yet

Instruments

None available yet

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
PARASITE_SPECIES_PUBLICATION_ID	The identifier for the parasite or other symbiont species or morphogroup in the original publication. If more than one unknown parasite or symbiont morphogroup from the same taxon was reported in a publication, distinct morphogroups are labeled with sequential numbers. Missing data identifier NR (not reported in original publication)	unitless	species
PARASITE_PHYLUM	The current accepted phylum of the parasite or other symbiont species from World Register of Marine Species [accessed 2022-04-15]. Missing data identifier NR (not reported in original publication)	unitless	phylum
PARASITE_CLASS	If known, the current accepted class of the parasite or other symbiont from World Register of Marine Species [accessed 2022-04-15]. Missing data identifier NR (not reported in original publication)	unitless	class
PARASITE_ORDER	If known, the current accepted order of the parasite or other symbiont species from World Register of Marine Species [accessed 2022-04-15]. Missing data identifier NA (not applicable) or NR (not reported in original publication)	unitless	order
PARASITE_FAMILY	If known, the current accepted family of the parasite or other symbiont from World Register of Marine Species [accessed 2022-04-15]. Missing data identifier NR (not reported in original publication)	unitless	family
PARASITE_GENUS	If known, the current accepted genus of the parasite or other symbiont from World Register of Marine Species [accessed 2022-04-15]. Missing data identifier NR (not reported in original publication)	unitless	genus
PARASITE_SPECIES	If known, the current accepted specific epithet of the parasite or other symbiont from World Register of Marine Species [accessed 2022-04-15]. This corresponds to the Darwin Core term specificEpithet http://rs.tdwg.org/dwc/terms/specificEpithet. Missing data identifier NR (not reported in original publication)	unitless	species
PARASITE_GROUP_COMMON_NAME	The common name used to refer to the parasite taxonomic group in Dykman et al. (2023). These include: Acanthocephala, Copepoda, Hirudinea, Isopoda, Monogenea, Nematoda, Nemertea, Polychaeta, Trematoda.	unitless	common_name
PARASITE_SPECIES_AphiaID	Numerical identifier from World Register of Marine Species at the lowest taxonomic level that matches parasite species publication ID [accessed 2022-04-15]. Units	unitless	taxon_code
PARASITE_SPECIES_LSID	Machine-readable Life Science Identifier (LSID) containing the AphiaID from World Register of Marine Species that matches the lowest known taxonomic level of the parasite species publication ID. This corresponds to Darwin Core term http://rs.tdwg.org/dwc/terms/scientificNameID.	unitless	taxon_code
HOST_SPECIES_PUBLICATION_ID	The identifier for the host species from the original publication. If the parasite or other symbiont was not associated with a specific host but found with a collection of hosts, the sample is described as free text. Missing data identifier NR (not reported in original publication)	unitless	species
HOST_PHYLUM	The current accepted phylum of the host from World Register of Marine Species [accessed 2022-04-15] Missing data identifier NA (not applicable) or NR (not reported in original publication)	unitless	phylum
HOST_CLASS	If known, the current accepted class of the host from World Register of Marine Species [accessed 2022-04-15]. Missing data identifier NA (not applicable) or NR (not reported in original publication)	unitless	class
HOST_ORDER	If known, the current accepted order of the host from World Register of Marine Species [accessed 2022-04-15]. Missing data identifier NA (not applicable) or NR (not reported in original publication)	unitless	order
HOST_FAMILY	If known, the current accepted family of the host from World Register of Marine Species [accessed 2022-04-15]. Missing data identifier NA (not applicable) or NR (not reported in original publication)	unitless	family
HOST_GENUS	If known, the current accepted genus of the host from World Register of Marine Species [accessed 2022-04-15]. Missing data identifier NA (not applicable) or NR (not reported in original publication)	unitless	genus
HOST_SPECIES	If known, the current accepted specific epithet of the host from World Register of Marine Species [accessed 2022-04-15]. This corresponds to Darwin Core term http://rs.tdwg.org/dwc/terms/scientificNameID. Missing data identifier NA (not applicable) or NR (not reported in original publication)	unitless	species
HOST_GROUP_COMMON_NAME	The common name used to refer to the host taxonomic group in Dykman et al. (2023). These include Crustacean, Fish, Mollusk, and Polychaete. Missing data identifier NA (not applicable) or NR (not reported in original publication)	unitless	common_name
HOST_SPECIES_AphiaID	Numerical identifier from World Register of Marine Species at the lowest level that matches the host publication ID. Missing data identifier NA (not applicable)	unitless	taxon_code
HOST_SPECIES_LSID	Machine-readable Life Science Identifier (LSID) containing the AphiaID from World Register of Marine Species at the lowest level that matches the host species publication ID. This corresponds to Darwin Core term http://rs.tdwg.org/dwc/terms/scientificNameID. Missing data identifier NA (not applicable)	unitless	taxon_code
OCEAN	The ocean from which the sample was collected. This conforms to the 8 ocean categories in the InterRidge Vents Database ver 3.4 https://vents-data.interridge.org/about_the_database Arctic, Indian, Mediterranean, N. Atlantic, N. Pacific, S. Atlantic, S. Pacific, Southern.	unitless	ocean
REGION	The oceanic region from which the sample was collected. This conforms to the InterRidge Vents Database ver 3.4 term “Region,” and generally indicates the regional setting of the vent field along the world plate boundaries https://vents-data.interridge.org/about_the_database. Exceptions include vent fields at intra-plate volcanoes and coastal faults. The Region tends to form part of the hierarchical vocabulary for each vent field Name Feature_ID VentField in MGDS. Missing data identifier NR (not reported in original publication)	unitless	region
VENT_FIELD_NAME_ID	The vent field from which the sample was collected. This corresponds to the InterRidge Vents Database ver 3.4 term “Name of vent field” https://vents-data.interridge.org/about_the_database. The Name ID uniquely identifies a vent field (assemblage of vent sites) as opposed to a vent site (e.g., Tica vent at EPR, 9°50'N vent field). Missing data identifier NR (not reported in original publication)	unitless	site
VENT_SITE	If known, the name of the vent site from which the sample was collected. This generally corresponds to the InterRidge Vents Database ver 3.4 term “Vent Sites” https://vents-data.interridge.org/about_the_database. These may be associated with controlled vocabularies for Feature_ID Vent in MGDS. In some cases, original publications listed site markers that are not official vent sites in the InterRidge Vent Database, in which case the reported site marker rather than the controlled vent site ID was recorded in this field. Missing data identifier NR (not reported in original publication)	unitless	site
COLLECTION_LATITUDE	The collection latitude in decimal degrees where the sample was collected as reported in the original publication. Missing data identifier NR (not reported in original publication)	decimal degrees	lat
COLLECTION_LONGITUDE	The collection longitude in decimal degrees where the sample was collected as reported in the original publication. Missing data identifier NR (not reported in original publication)	decimal degrees	lon
MAXIMUM_OR_SINGLE_REPORTED_DEPTH	The single or greatest reported depth in meters of the sample as reported in the original publication. NR (not reported in original publication)	meters	depth
COLLECTION_YEAR	The year the specimen was collected. Missing data identifier NR (not reported in original publication)	year	year
COLLECTION_DATE	The date the specimen was collected in format “YYYY-MM-DD”. In some cases, only year (“YYYY”) or year and month (“YYYY-MM”) was provided in the original publication. Missing data identifier NR (not reported in original publication)	date	date
CRUISE_ID	The identifier for the cruise during which the specimen was collected. Missing data identifier NR (not reported in original publication)	unitless	cruise_id
SHIP	The ship used for the collection. Missing data identifier NR (not reported in original publication)	unitless	ship
COLLECTION_PLATFORM_OR_INSTRUMENT	An identifier for the platform or instrument used to collect the samples, which is either a deep submergence vehicle (HOV or ROV) or a dredge. Missing data identifier NR (not reported in original publication)	unitless	instrument
DIVE_NUMBER	If applicable, the unique HOV or ROV dive number for the sample collection. Missing data identifier NA (not applicable) or NR (not reported in original publication)	unitless	dive_id
HOST_TISSUE	The location or locations on the host where the parasite was encountered according to the original publication. Missing data identifier NR (not reported in original publication)	unitless	sample_descrip
PARASITE_LIFE_STAGE	The life stage of the parasite at the time of discovery from the original publication. Missing data identifier NR (not reported in original publication)	unitless	stage
PARASITE_CONSUMER_STRATEGY	A consumer strategy for the parasite or other symbiont at its current life stage based on definitions in Lafferty & Kuris (2002) and Lafferty et al. (2015). This dataset includes vent macroparasites and vent symbionts of three other consumer strategies (commensal, egg predator, and micropredator). A “Macroparasite” is a true parasite that has intensity-dependent pathology. A “Commensal” lives in close association with a host while not harming the host. An “Egg predator” feeds on brooded eggs on the host rather than directly on host tissue. A “Micropredator” is a predator that does not kill its prey.	unitless	sample_descrip
CITATION_FIRST_AUTHOR_LAST_NAME	The last name of the first author on the citation that describes the sample.	unitless	author
CITATION_YEAR	The publication year for the citation that describes the sample.	unitless	year
CITATION	A full citation for the publication that describes the sample.	unitless	reference_paper
NOTES	Notes	unitless	comment

Database

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Dataset: Hydrothermal vent parasite species reported in published literature