Dataset: 16S rRNA gene sequences
Deployment: JRES-336

Illumina MiSeq amplicons of the V4 hyper variable region of 16S rRNA gene from IODP Expedition 336..
Principal Investigator: 
Dr Beth N. Orcutt (Bigelow Laboratory for Ocean Sciences)
BCO-DMO Data Manager: 
Shannon Rauch (Woods Hole Oceanographic Institution, WHOI BCO-DMO)
Current State: 
Final no updates expected
Version: 
03 Dec 2015
Deployment Synonyms:
 IODP 336,  North Pond
Version Date: 
2015-12-03
Description

This dataset contains Illumina MiSeq amplicons of the V4 hyper variable region of 16S rRNA gene. Raw data have been deposited in the NCBI Sequence Read Archive under accession number SRP068428.

Additional data files:
(1) FASTA-formatted quality-controlled 16s rRNA gene sequences, organized by name of the operational taxonomic unit (OTU): X336_DataReport_Supplemental_filteredOTUs.fasta
(2) Excel file containing a record of the abundance of each OTU in each sample, organized by the name of the IODP Expedition 336 sample, along with the taxonomy of the OTU (based on classification as described in methods) and the closest environmental relative as identified using NCBI's BLAST algorithm (as described in methods): X336_DataReport_Supplemental_SequenceAbundance.xlsx

More information about this dataset deployment