CTD seawater bottle data collected from the R/V Kilo Moana cruises KM2113 and KM2212 in the North Pacific Ocean in 2021 and 2022

Website: https://www.bco-dmo.org/dataset/1000924
Data Type: Cruise Results
Version: 1
Version Date: 2026-06-26

Project
» Collaborative Research: Defying Dissolution: Unraveling the Enigma of North Pacific Deep-Sea Scleractinian Reefs in Undersaturated Water (Defying Dissolution)
ContributorsAffiliationRole
Shamberger, Kathryn E.F.Texas A&M University (TAMU)Co-Principal Investigator
Kassem, Siobhan F.Texas A&M University (TAMU)Student
Rauch, ShannonWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
This dataset contains CTD bottle data collected in the North Pacific Ocean (25 – 35°N and 170°E – 170°W) from August 26 to September 26, 2021 (KM2113) and September 9 to October 22, 2022 (KM2212) aboard the R/V Kilo Moana. Conductivity, temperature, and depth profiles and discrete seawater samples were collected near Northwestern Hawaiian Islands and Emperor Seamount Chain using a shipboard Seabird Electronic SBE25 profiler with salinity, temperature, depth, and dissolved oxygen sensors attached to a 24 12-liter Niskin bottle rosette. All data taken were part of the collaborative research project, "Defying Dissolution: Unraveling the Enigma of North Pacific Deep-Sea Scleractinian Reefs in Undersaturated Water". Understanding the seawater characteristics allows for the quantification of biogeochemical systems within the study area to assess the implications of seawater to the deep-sea coral reefs. 


Coverage

Spatial Extent: N:35.1 E:-173.27 S:26.17 W:171.9
Temporal Extent: 2021-08-26 - 2022-10-24

Methods & Sampling

Data were collected on the R/V Kilo Moana from August 26 to September 26, 2021 on cruise KM2113 and from September 9 to October 22, 2022 on cruise KM2212.

Conductivity, temperature, and depth (CTD) profiles and discrete seawater samples were collected near each seamount using a shipboard Seabird Electronic SBE25 profiler with salinity, temperature, depth, and dissolved oxygen sensors attached to a 24 12-liter (L) Niskin bottle rosette. Discrete seawater samples from Niskin bottles were collected at 19 different depths ranging from 10 meters (m) to 2448 m. Consistent discrete sample depths were maintained across all sites and both cruises. Discrete sample depths were selected to minimize uncertainty associated with profile calculations and were as follows: near bottom (~5 m from bottom), 1000, 950, 900, 850, 800, 750, 700, 650, 600, 550, 500, 450, 400, 300, 200, 100, 50, 10 m. For sites with bottom depth deeper than ~1500 m, additional depths were sampled every ~250 m to get a more comprehensive profile. CTD cast samples characterized the open ocean water column approximately 1-10 kilometers from each seamount summit. The distance from the seamount wall depended on the seamount slope steepness and sea state conditions. Discrete water samples collected from CTD casts 1-10 km from seamounts will be referred to as CTD samples.


Data Processing Description

Quality flag definitions are available at https://www.ncei.noaa.gov/products/ocean-carbon-acidification-data-system and listed below:

The three sets of WOCE primary level quality control (QC) flags for Niskin bottles, discrete sampling, and sensor based measurements, respectively, are consolidated here into a single flagging scheme to avoid confusion. This consolidated flagging scheme is recommended for all types of OA data that will be submitted to OCADS.

QC Flags -- Flag Meaning

2 -- Acceptable
3 -- Questionable
4 -- Known bad
6 -- Median of replicates
9 -- Missing value


BCO-DMO Processing Description

- Loaded original file "2022_NWHI_Standardized_Data_updated.csv" into the BCO-DMO system.
- Loaded original file "2021_NWHI_Standardized_Data_updated2.csv" into the BCO-DMO system.
- Concatenated both tables into a single combined table.
- Combined Year_UTC, Month_UTC, Day_UTC, and Time_UTC (UTC timezone) into a new ISO_DateTime_UTC column formatted as %Y-%m-%dT%H:%MZ.
- Rounded Silicate_flag, Phosphate_flag, and Nitrate_and_Nitrite_flag to 0 decimal places and converted to integer type to correct decimal-formatted flag values (e.g., 2.00).
- Computed a new Longitude_180 column by converting Longitude values greater than 180 to the -180 to 180 scale (subtracting 360); original Longitude column retained on a 0-360 scale.
- Saved the final file as "1000924_v1_km2113_km2212_ctd.csv".


Problem Description

Nutrient data from 2021 is not available. 

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Data Files

File
1000924_v1_km2113_km2212_ctd.csv
(Comma Separated Values (.csv), 55.75 KB)
MD5:091e249e038b7f34dbd77a615710f0a0
Primary data file for dataset ID 1000924, version 1

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Supplemental Files

File
Seamount_Locations.pdf
(Portable Document Format (.pdf), 36.47 KB)
MD5:a8a45fd94b69ab7bde3a15070475860c
Supplemental file for dataset ID 1000924, version 1. Identifies the latitude and longitude of each seamount.

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Related Publications

Kassem, S. F., Shamberger, K. E. F., Savoie, A. M., Hicks, T. L., Feely, R. A., Baco, A. R., & Roark, E. B. (Submitted). Aragonite saturation horizon variability along North Pacific seamounts and implications for deep-sea coral reefs. Journal of Geophysical Research: Oceans.
Results

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Parameters

ParameterDescriptionUnits
EXPOCODE

Expedition code consists of the four-digit International Council for the Exploration of the Sea (ICES) platform code and the date of departure from port (UTC) in ISO8601 format (YYYYMMDD).

unitless
Cruise_ID

Cruise identification is the particular ship cruise number or other alias for the cruise.

unitless
Station_ID

Station identification. Numerical Station_IDs without letters are recommended to facilitate future QC efforts.

unitless
Cast_number

Cast number, where a cast is the lowering of equipment over the side at one station, e.g., CTD, net tow, etc.

unitless
Rosette_position

Rosette position refers to the position number around the CTD-rosette (e.g., 1 of a 1-12, or 1-24, or 1-36 number).

unitless
Niskin_ID

Niskin_ID is a unique alphanumeric identifier assigned to only that Niskin bottle over the duration of the expedition.

unitless
Niskin_flag

Quality control flag for tracking problems with Niskin closure and integrity.

unitless
Sample_ID

A sample identifier (Sample_ID), which uniquely identifies a row of data during the subsequent QC and interpretation process, is often generated by concatenating the Station_ID, Cast_number, and Rosette_position, according to: Sample_ID = Station_ID × 10000 + Cast_number × 100 + Rosette_position.

unitless
Year_UTC

Calendar year in UTC when Niskin bottles at a specific depth are triggered

unitless
Month_UTC

Calendar month in UTC when Niskin bottles at a specific depth are triggered

unitless
Day_UTC

Calendar day in UTC when Niskin bottles at a specific depth are triggered

unitless
Time_UTC

Time in UTC (hh:mm:ss) when Niskin bottles at a specific depth are triggered

unitless
Yearday_UTC

Yearday refers to the day number in an annual cycle. (e.g., 06:00 on Jan 1 means yearday = 1.25)

unitless
ISO_DateTime_UTC

Date and time (UTC) in ISO 8601 format

unitless
Latitude

Latitude in decimal degrees North (negative for southern hemisphere) when Niskin bottles at a specific depth are triggered

decimal degrees
Longitude

Longitude in decimal degrees on a 0-360 scale (all values are positive) when Niskin bottles at a specific depth are triggered

decimal degrees
Longitude_180

Longitude values on a -180 to 180 scale where positive values represent East and negative values represent West

decimal degrees
Depth_bottom

Bottom water depth of the sampling station

meter (m)
Depth

Depth at which a sample is taken. It can be approximated from CTDPRES and Latitude using the TEOS-10 equation.

meter (m)
CTDTEMP_ITS90

In situ temperature recorded from CTD on the ITS-90 scale.

degrees Celsius
CTDTEMP_flag

Quality control flag for CTDTEMP

unitless
CTDSAL_PSS78

Salinity calculated from conductivity recorded with CTD using the equation of the Practical Salinity Scale of 1978.

unitless
CTDSAL_flag

Quality control flag for CTDSAL

unitless
CTDOXY

Dissolved oxygen (O2) content from oxygen sensors mounted on the CTD

micromoles per kilogram (umol/kg)
CTDOXY_flag

Quality control flag for CTDOXY

unitless
DIC

Total dissolved inorganic carbon content

micromoles per kilogram (umol/kg)
DIC_flag

Quality control flag for DIC

unitless
TA

Total alkalinity content

micromoles per kilogram (umol/kg)
TA_flag

Quality control flag for TA

unitless
Silicate

Silicate (total dissolved inorganic silicate: Si(OH)4, H4SiO4, SiO2, Sil) content

micromoles per kilogram (umol/kg)
Silicate_flag

Quality control flag for Silicate

unitless
Phosphate

Phosphate (total dissolved inorganic phosphate: H2PO4−, HPO42−, PO43−) content

micromoles per kilogram (umol/kg)
Phosphate_flag

Quality control flag for Phosphate

unitless
Nitrate_and_Nitrite

Nitrate plus nitrite content

micromoles per kilogram (umol/kg)
Nitrate_and_Nitrite_flag

Quality control flag for Nitrate_and_Nitrite

unitless
Ammonium

Ammonium (NH4+ and NH3) content

micromoles per kilogram (umol/kg)


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Instruments

Dataset-specific Instrument Name
12L Niskin bottle
Generic Instrument Name
Niskin bottle
Dataset-specific Description
Seabird Electronic SBE25 profiler with salinity, temperature, depth, and dissolved oxygen sensors attached to a 24 12-liter Niskin bottle rosette.
Generic Instrument Description
A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc.

Dataset-specific Instrument Name
Seabird Electronic SBE25 profiler
Generic Instrument Name
Sea-Bird SBE 25 Sealogger CTD
Dataset-specific Description
Seabird Electronic SBE25 profiler with salinity, temperature, depth, and dissolved oxygen sensors attached to a 24 12-liter Niskin bottle rosette.
Generic Instrument Description
The Sea-Bird SBE 25 SEALOGGER CTD is battery powered and is typically used to record data in memory, eliminating the need for a large vessel, electrical sea cable, and on-board computer. All SBE 25s can also operate in real-time, transmitting data via an opto-isolated RS-232 serial port. Temperature and conductivity are measured by the SBE 3F Temperature sensor and SBE 4 Conductivity sensor (same as those used on the premium SBE 9plus CTD). The SBE 25 also includes the SBE 5P (plastic) or 5T (titanium) Submersible Pump and TC Duct. The pump-controlled, TC-ducted flow configuration significantly reduces salinity spiking caused by ship heave, and in calm waters allows slower descent rates for improved resolution of water column features. Pressure is measured by the modular SBE 29 Temperature Compensated Strain-Gauge Pressure sensor (available in eight depth ranges to suit the operating depth requirement). The SBE 25's modular design makes it easy to configure in the field for a wide range of auxiliary sensors, including optional dissolved oxygen (SBE 43), pH (SBE 18 or SBE 27), fluorescence, transmissivity, PAR, and optical backscatter sensors. More information from Sea-Bird Electronics: http:www.seabird.com.


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Deployments

KM2113

Website
Platform
R/V Kilo Moana
Start Date
2021-08-13
End Date
2021-10-02
Description

KM2212

Website
Platform
R/V Kilo Moana
Start Date
2022-09-15
End Date
2022-10-30
Description
See more information at R2R: https://www.rvdata.us/search/cruise/KM2212


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Project Information

Collaborative Research: Defying Dissolution: Unraveling the Enigma of North Pacific Deep-Sea Scleractinian Reefs in Undersaturated Water (Defying Dissolution)

Coverage: Hawaii Emperor Seamount Chain, North Pacific Ocean


NSF Award Abstract:
Like their shallow-water counterparts, deep-sea corals provide structure and habitat that support a diverse community of invertebrates and commercially important fish species. However, as ocean acidification impacts the water chemistry of the surface and deep ocean, the future of deep-sea reefs is highly uncertain because ocean acidification makes it more difficult for corals to build the three-dimensional structure that these ecosystems depend on. The naturally harsh water chemistry conditions of the North Pacific are being exacerbated by ocean acidification therefore it was previously thought that deep-sea coral reef development could not occur in the region. Despite these expectations, reefs were recently discovered in the Northwestern Hawaiian Islands (NWHI) and the Emperor Seamount Chain (ESC), with 4 of 7 sites in waters that are corrosive to, or likely to dissolve, the coral skeletons that make up deep-sea reefs. With the discovery of these reefs, we have an unprecedented opportunity to investigate the potential impact of ocean acidification on these important ecosystems because, in contrast to previous studies, there is a gradient of water chemistry across our study sites, all at the same depth. This study will address basic questions regarding reef development in the deep sea, including: Can deep-sea coral reefs develop in water that is corrosive to coral skeletons? What is the fate of reefs that developed under supportive water chemistry conditions once they experience corrosive water? How long can reefs persist in corrosive water? Through addressing these questions, this study will provide critical insights into deep-sea reef formation, persistence, distribution, and the effects of ocean acidification on deep-sea coral communities. The investigators have a track record of partnerships with NOAA's Deep-Sea Coral Research and Technology Program, and with the agencies actively making management decisions in this region for seamount deep-sea coral communities including the North Pacific Fisheries Commission and the International Seabed Authority. Results will be broadly circulated to the scientific community through publications, coral collections contributed to museums, and public databases. This project will contribute to developing a diverse and competitive STEM workforce through training of an underrepresented postdoctoral scientist, three graduate students, and undergraduate researchers. A partnership with WhaleTimes, Inc. will include ROV telepresence for the Creep into the Deep Program, K-12 School Visits, and e-books.

Despite expectations that deep-sea scleractinian reefs could not exist under the harsh carbonate chemistry conditions of the North Pacific, reefs were recently discovered in the Northwestern Hawaiian Islands (NWHI) and the Emperor Seamount Chain (ESC), with 4 of 7 sites in waters undersaturated with respect to aragonite. The discovery of these reefs, with more than half the sites in undersaturated water, provides an unprecedented opportunity to investigate the potential impact of ocean acidification on these important ecosystems. It is becoming critical to gain a better understanding of the role of aragonite saturation in the distribution of deep-sea scleractinian reefs because it has been documented that the aragonite saturation horizon (ASH) is shoaling throughout the world oceans due to ocean acidification. More deep-sea reefs will experience undersaturation in the near future as aragonite saturation declines and the ASH shoals, making the future of deep-sea reefs and the ecologically and economically valuable ecosystems they support highly uncertain. Building on the discovery of deep-sea coral reefs in the NWHI and ESC, the overarching question of this project is: How is it that deep-sea scleractinian coral reefs can occur in undersaturated water, well below the hypothesized reef development limit Although individual corals may be capable of calcifying in undersaturated water, it is unlikely that a three-dimensional reef structure could develop since deep-sea calcification rates are slow and most of the reef matrix is dead skeleton susceptible to dissolution. Therefore the hypotheses to be tested are: 1) These deep-sea reefs developed in saturated water and are now in undersaturated water because the ASH has shoaled; 2) The reefs in undersaturated water are now net dissolving; and 3) Environmental parameters other than aragonite saturation are driving reef distribution. To test these three hypotheses, we plan two research cruises to characterize the reefs and environmental parameters of nine seamounts across an aragonite saturation gradient where reefs exist above and below the ASH. Coral and water samples will be collected, an ROV will conduct video transect surveys, and experimental dissolution blocks and in situ instrumentation will be deployed at the reef sites to investigate: carbonate chemistry variability on diel (in situ instruments) to centennial (skeletal boron isotopes as a pH proxy) scales, calcification and dissolution rates, and reef ecology. Further, species distribution modeling will be used to examine the environmental factors that determine the distribution of these deep-sea reefs.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)
NSF Division of Ocean Sciences (NSF OCE)

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