Broadscale physical and nutrient kriged data, five year summary from R/V Endeavor, R/V Albatross IV, R/V Oceanus in the Gulf of Maine and Georges Bank, WHOI from 1995-2004 (GB project)

Website: https://www.bco-dmo.org/dataset/2297
Version: 1
Version Date: 2010-03-12

Project
» U.S. GLOBEC Georges Bank (GB)

Program
» U.S. GLOBal ocean ECosystems dynamics (U.S. GLOBEC)
ContributorsAffiliationRole
Mountain, DavidNational Oceanic and Atmospheric Administration (NOAA)Principal Investigator
Townsend, David W.University of MiamiPrincipal Investigator
Copley, NancyWoods Hole Oceanographic Institution (WHOI)Technician, BCO-DMO Data Manager
Taylor, MaureenNational Oceanic and Atmospheric Administration (NOAA)Technician


Coverage

Spatial Extent: N:42.5 E:-65.5 S:40 W:-70.5
Temporal Extent: 1995 - 2004

Dataset Description

Modeling study performed at WHOI using Broadscale cruise data. Thumbnail images of the broad-scale data, processed using kriging techniques, are displayed here. Clicking on the thumbnail image will open a new browser window displaying the original, large image. Matlab data files are also accessible on these pages by clicking on the appropriate link. Matlab data files are of kriged values for Georges Bank with 2385 grid points. Note that on some browsers it will be necessary to hold down the "shift key" before clicking on the link in order to download the data to a file. Otherwise the data are loaded into your browser. Unless your browser knows what to do with Matlab binary data, it is best to download the whole file.

Thumbnail images were created from the original Matlab generated images using the mogrify utility in a single batch operation prior to serving. The thumbnail image page, however, is created each time it is viewed so that the most recent images are incorporated in the served data.

These maps were created using EasyKrig 3.0 (D. Chu, WHOI, 2004, http://globec.whoi.edu/software/kriging/easy_krig/easy_krig.html) by Nancy Copley, WHOI. All data were treated anisotropically, i.e., the variable of interest changes more rapidly in one direction than in another, essentially stretching the effect. In this case the x:y ratio was 2:1 and the rotation was 45 degrees for alignment with the Bank. These parameters were chosen based upon known circulation and geography of Georges Bank. When plotting the station locations as circles on the maps, only those stations containing data are shown. Some datasets are quite sparse, e.g. ammonia at 50-100m.

Nutrients: nitrates & nitrites (NO3/NO2), ammonia (NH4), silica (SiOH4), phosphates (PO4) (Townsend et al, U. Maine):
Data are available for 1997-1999, for January through June except:
1997: no January or June data
1998: no January data

The same colorbar range was used for the nutrient maps (nitrates/nitrites, ammonia, phosphates, silicates) as D. Townsend used in his plots, located on the GLOBEC website at: http://globec.whoi.edu/jg/info/globec/gb/nut_phyto%7Bdir=globec.whoi.edu/jg/dir/globec/gb/,data=grampus.umeoce.maine.edu/jg/serv/globec/nut_phyto.html0%7D?

Chlorophyll-a values for 1995-1996 (February through July 1995 and January through June 1996) are from the ctd_hydrography; the 1997-1999 data are from D. Townsend's nutrient data. The color range is given as both 0-6 and 0-10 in order to make both large and small scale variations more clearly visible.

Nutrient and chl-a data were averaged from 3 depth strata: 0-15m, 15-50m, and 50-100m. There were usually one or two bottle samples in each range.

Biovolume data from bongo net displacement volumes is from D. Mountain, Jack Green and Joe Kane, NMFS:http://globec.whoi.edu/jg/serv/globec/gb/broadscale/bongovols.html0%7Bdir=globec.whoi.edu/jg/dir/globec/gb/broadscale/,info=globec.whoi.edu/jg/info/globec/gb/broadscale/bongovols%7D

Temperature, fluorometry, salinity and density stratification values were kriged from data provided by D. Mountain at http://globec.whoi.edu/jg/dir/globec/gb/broadscale/ under ctd_hydrography.

The density stratification was calculated by first finding the density of each station and depth for which there was a temperature and salinity using a Matlab mfile function called sw_dens.m. Then the mean density was calculated for the depth strata 0-15 meters and for 50-100 m. If the maximum depth of a station was less than 50 m, the mean of 25-50m was used as the deep value. The difference is the stratification index.


Methods & Sampling

See cruise reports for information on original data used to create the kriged maps.

NOTE: There appears to be a decrease in the sensitivity of the fluorometer beginning in
June 1997 (It may have begun earlier but the data is too variable to tell).
It appeared to remain about the same until January of 1999 where it declined again
and became only about 1/3 - 1/4 the sensitivity of what it was in 95 and 96.
There does not appear to be a further change during 1999 although again it is hard
to tell. (E.D.,8/05)


Data Processing Description

VARIABLE STRUCTURE

There are two structures: "para" and "data", where structure "para" contains all parameters including "load data", "variogram", "kriging", and "display", and structure "data" contains the input ("in")and output data ("out") structures.

 

1. PARAMETERS
VARIABLE NAME DESCRIPTION
para     Parameters Structure
  .home_dir   home directory
  .optim   flag of optimization tool box
  .dataprep   Data Preparation parameters
    .filename input filename
    .fileID File ID for the data set
    .x_norm normalization factor for variable 1
    .y_norm normalization factor for variable 2
    .z_norm normalization factor for variable 3
    .x_offset coordinate offset for variable 1
    .y_offset coordinate offset for variable 2
    .z_offset coordinate offset for variable 3
    .latlonfac conversion factor between longitude/latitude (deg) and x/y (length)
    .reduct_fac data reduction factor
    .filter_type filter type
    .filter_supt filter support
    .transform_index index of data transformation model
  .vario   (Semi-)Variogram/Correlogram parameters
    .model model index of variogram/correlogram
    .sill sill
    .lscl relative length scale
    .nugt nugget
    .powr power
    .hole scale of hole effect
    .range range of modeling
    .res resolution of the lag
    .angle anisotrophy angle
    .ratio anisotrophy aspect ratio
    .ang_res angle resolution of 2D variogram/correlogram
    .para_file parameter filename
  .krig   Kriging parameters
    .xmin minimum x-coordinate
    .xmax maximum x-coordinate
    .dx resolution in x direction
    .ymin minimum y-coordinate
   

.ymax

maximum y-coordinate
    .dy resolution in y direction
    .zmin minimum z-coordinate
    .zmax maximum z-coordinate
    .dz resolution in z direction
    .model kriging model index
    .scheme kriging scheme index
    .blk_nx horizontal block size (only for point-block kriging)
    .blk_ny vertical block size (only for point-block kriging)
    .srad kriging search radius
    .kmin minimum kriging points
    .kmax maximum kriging points
    .elim  relative error limit
    .batch_file_proc flag for batch file processing
    .batch_data_file file that contains a list of input data filename(s) for batch processing
     .grid_file filepath and filename of the customized grid file
       

2. OUTPUT AND INPUT DATA

VARIABLE NAME   DESCRIPTION
data       Data Structure
  .in     Input data
    .dim   dimension of the input data
     .var1   x-coordinates of raw data after duplicated data and nan's removed
     .var2   y-coordinates of raw data after duplicated data and nan's removed
     .var3   z-coordinates of raw data after duplicated data and nan's removed
    .var   raw data after duplicated data and nan's removed
    .x   x - coordinates after initial manipulation (reduction, normalization)
    .y   y - coordinates after initial manipulation (reduction, normalization)
    .z   z - coordinates after initial manipulation (reduction, normalization)
    .v   data after initial data processing (reduction)
    .tvar   transformed data from data.in.var.
    .tv   transformed data from data.in.v
  .out     Output data
    .vario   Data output from semi-variogram/correlogram computation
      .c0 variance
      .lag lag of semi-variogram (correlogram)
      .gammah semi-variogram
      .cnt count of data pairs at each lag
      .ang angle array for 2D semi-variogram/correlogram
      .x x-axis of 2D semi-variogram/correlogram
      .y y-axis of 2D semi-variogram/correlogram
      .lag_theo lag used in model-based variogram/correlogram
      .gammah_theo model-based semi-variogram
      .gammah2d 2D semi-variogram
    .krig   Data output from kriging
      .nx output data dimension: nx * ny for 2D and nx * ny * nz for 3D
      .ny output data dimension: nx * ny for 2D and nx * ny * nz for 3D
      .nz output data dimension: nx * ny * nz for 3D
      .xg normalized grided x-coordinate
      .yg normalized grided y-coordinate
      .zg normalized grided z-coordinate
      .gx normalized grided x-coordinates for customized grids
      .gy normalized grided y-coordinates for customized grids
      .gz normalized grided z-coordinates for customized grids
      .Xg 2D/3D x-coordinate matrix
      .Yg 2D/3D x-coordinate matrix
      .Zg 2D/3D x-coordinate matrix
      .Vg 2D/3D data from kriging at (Xg, Yg)
      .Eg 2D/3D kriging variance at (Xg,Yg)
      .Ig reshaped 1D representation of the 2D/3D variable Cg
      .eg reshaped 1D representation of the 2D/3D variable Eg
      .gv kriging results at the customized grids (gx, gy, gz)
      .ge kriging variance at the customized grids (gx, gy, gz)
      .Is predicted observed data from Double Kriging cross-validation
      .Ijk predicted observed data from leave-one-out cross-validation
      .ek normalized residual array in Q1 and Q2 cross-validations
      .q1 value of Q1 cross validation
      .q2 value of Q2 cross validation

3. Example
To plot the kriging map using your own program, load the output file saved
from easy_krig3.0 and then type:

>>pcolor(data.out.krig.Xg,data.out.krig.Yg,data.out.krig.Cg);
>>colorbar;shading interp

to plot a kriging image, or

>>pcolor(data.out.krig.Xg,data.out.krig.Yg,data.out.krig.Eg);
>>colorbar;shading interp

to plot the kriging variance image. The structured variable "data.out.krig.Xg" means "out" is a substructure under "data", "krig" is a substructure of "out", and "Xg" is a member (2d array) of the substructure "krig". All substructures and members of the primary structures "data" and "para" are listed and explained above (note that only part of those parameters may be useful to the users).

Last modified: May 18, 2005


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Data Files

File
broadscale_summary.csv
(Comma Separated Values (.csv), 8.07 KB)
MD5:d5bc8844992d0e666b5d5973736dc022
Primary data file for dataset ID 2297

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Parameters

ParameterDescriptionUnits
biovolBongo net displacement volume cc/m2
chl_aChlorophyll-a pigment milligrams per meter cubed (mg/m3) or micrograms per liter (g/l)
densityDensity stratification index density of deep (25-50m) minus density of shallow (0-15m)
flvoltFluorometer voltage measurement volts
NH4Ammonium microM (micromolar) or g-at NH3-N/l
NO3_NO2Nitrate and Nitrite microM (micromolar) or microgram-at NO3-N and NO2-N/l
PO4Orthophosphate microM (micromolar) or g-at PO4-P/l
salSalinity practical salinity units
SiOH_4 Orthosilicic Acid Si(OH)4 microM(micromolar) or g-at Si(OH)4-Si/l
tempTemperature degrees Centigrade
pressPressure decibars


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Instruments

Dataset-specific Instrument Name
CTD profiler
Generic Instrument Name
CTD - profiler
Generic Instrument Description
The Conductivity, Temperature, Depth (CTD) unit is an integrated instrument package designed to measure the conductivity, temperature, and pressure (depth) of the water column. The instrument is lowered via cable through the water column. It permits scientists to observe the physical properties in real-time via a conducting cable, which is typically connected to a CTD to a deck unit and computer on a ship. The CTD is often configured with additional optional sensors including fluorometers, transmissometers and/or radiometers. It is often combined with a Rosette of water sampling bottles (e.g. Niskin, GO-FLO) for collecting discrete water samples during the cast. This term applies to profiling CTDs. For fixed CTDs, see https://www.bco-dmo.org/instrument/869934.


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Deployments

EN276

Website
Platform
R/V Endeavor
Report
Start Date
1996-01-10
End Date
1996-01-22
Description
broad-scale

lab_WHOI_broadscale_summary

Website
Platform
WHOI
Start Date
2004-10-01
End Date
2004-12-31
Description
kriged maps from Broadscale cruise data were created using kriging software created by D. Chu.

Methods & Sampling
Modeling study performed at WHOI using Broadscale cruise data

EN261

Website
Platform
R/V Endeavor
Start Date
1995-02-10
End Date
1995-02-20
Description
broad-scale

EN263

Website
Platform
R/V Endeavor
Report
Start Date
1995-03-13
End Date
1995-03-24
Description
broad-scale

EN265

Website
Platform
R/V Endeavor
Start Date
1995-04-11
End Date
1995-04-22
Description
broad-scale

AL9505

Website
Platform
R/V Albatross IV
Report
Start Date
1995-05-09
End Date
1995-05-18
Description
broad-scale

AL9506

Website
Platform
R/V Albatross IV
Report
Start Date
1995-06-05
End Date
1995-06-15
Description
broad-scale

AL9508

Website
Platform
R/V Albatross IV
Report
Start Date
1995-07-10
End Date
1995-07-20
Description
broad-scale

EN278

Website
Platform
R/V Endeavor
Start Date
1996-02-13
End Date
1996-02-25
Description
broad-scale

EN282

Website
Platform
R/V Endeavor
Start Date
1996-04-08
End Date
1996-04-20
Description
broad-scale

AL9607

Website
Platform
R/V Albatross IV
Report
Start Date
1996-06-03
End Date
1996-06-13
Description
broad-scale

AL9605

Website
Platform
R/V Albatross IV
Report
Start Date
1996-05-06
End Date
1996-05-17
Description
broad-scale

AL9701

Website
Platform
R/V Albatross IV
Report
Start Date
1997-01-13
End Date
1997-01-20
Description
broad-scale

OC317

Website
Platform
R/V Oceanus
Start Date
1998-02-06
End Date
1998-02-19
Description
broad-scale

EN319

Website
Platform
R/V Endeavor
Report
Start Date
1999-02-21
End Date
1999-03-04
Description
process zooplankton vital rates

OC322

Website
Platform
R/V Oceanus
Report
Start Date
1998-04-15
End Date
1998-04-27
Description
broad-scale

AL9806

Website
Platform
R/V Albatross IV
Report
Start Date
1998-05-13
End Date
1998-05-22
Description
broad-scale

AL9808

Website
Platform
R/V Albatross IV
Report
Start Date
1998-06-16
End Date
1998-06-26
Description
broad-scale

AL9901

Website
Platform
R/V Albatross IV
Report
Start Date
1999-01-12
End Date
1999-01-24
Description
broad-scale

OC336

Website
Platform
R/V Oceanus
Report
Start Date
1999-02-11
End Date
1999-02-23
Description
broad-scale

EN320

Website
Platform
R/V Endeavor
Report
Start Date
1999-03-10
End Date
1999-03-23
Description
broad-scale

OC341

Website
Platform
R/V Oceanus
Report
Start Date
1999-04-16
End Date
1999-04-27
Description
broad-scale

AL9904

Website
Platform
R/V Albatross IV
Start Date
1999-05-19
End Date
1999-05-27
Description
broad-scale

AL9906

Website
Platform
R/V Albatross IV
Report
Start Date
1999-06-14
End Date
1999-06-24
Description
broad-scale

OC298

Website
Platform
R/V Oceanus
Report
Start Date
1997-02-11
End Date
1997-02-23
Description
broad-scale

OC300

Website
Platform
R/V Oceanus
Report
Start Date
1997-03-16
End Date
1997-03-28
Description
broad-scale

OC302

Website
Platform
R/V Oceanus
Report
Start Date
1997-04-22
End Date
1997-05-02
Description
broad-scale

AL9705

Website
Platform
R/V Albatross IV
Report
Start Date
1997-05-19
End Date
1997-05-27
Description
broad-scale

AL9707

Website
Platform
R/V Albatross IV
Report
Start Date
1997-06-18
End Date
1997-06-28
Description
broad-scale

AL9801

Website
Platform
R/V Albatross IV
Report
Start Date
1998-01-07
End Date
1998-01-19
Description
broad-scale

OC275

Website
Platform
R/V Oceanus
Start Date
1996-03-11
End Date
1996-03-22
Description
broad-scale


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Project Information

U.S. GLOBEC Georges Bank (GB)


Coverage: Georges Bank, Gulf of Maine, Northwest Atlantic Ocean


The U.S. GLOBEC Georges Bank Program is a large multi- disciplinary multi-year oceanographic effort. The proximate goal is to understand the population dynamics of key species on the Bank - Cod, Haddock, and two species of zooplankton (Calanus finmarchicus and Pseudocalanus) - in terms of their coupling to the physical environment and in terms of their predators and prey. The ultimate goal is to be able to predict changes in the distribution and abundance of these species as a result of changes in their physical and biotic environment as well as to anticipate how their populations might respond to climate change.

The effort is substantial, requiring broad-scale surveys of the entire Bank, and process studies which focus both on the links between the target species and their physical environment, and the determination of fundamental aspects of these species' life history (birth rates, growth rates, death rates, etc).

Equally important are the modelling efforts that are ongoing which seek to provide realistic predictions of the flow field and which utilize the life history information to produce an integrated view of the dynamics of the populations.

The U.S. GLOBEC Georges Bank Executive Committee (EXCO) provides program leadership and effective communication with the funding agencies.



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Program Information

U.S. GLOBal ocean ECosystems dynamics (U.S. GLOBEC)


Coverage: Global


U.S. GLOBEC (GLOBal ocean ECosystems dynamics) is a research program organized by oceanographers and fisheries scientists to address the question of how global climate change may affect the abundance and production of animals in the sea.

The U.S. GLOBEC Program currently had major research efforts underway in the Georges Bank / Northwest Atlantic Region, and the Northeast Pacific (with components in the California Current and in the Coastal Gulf of Alaska). U.S. GLOBEC was a major contributor to International GLOBEC efforts in the Southern Ocean and Western Antarctic Peninsula (WAP).



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Funding

Funding SourceAward
National Science Foundation (NSF)
National Oceanic and Atmospheric Administration (NOAA)

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