Microbial counts, Eukaryotes from the R/V Melville IronEx II cruise in the Equatorial Pacific Ocean in 1995 (IronEx II project)

Website: https://www.bco-dmo.org/dataset/3445
Version: 10 March 2011
Version Date: 2011-03-10

Project
» Iron Experiment II (IronExII)

Program
» Iron Synthesis (FeSynth)
ContributorsAffiliationRole
Coale, Kenneth H.Moss Landing Marine Laboratories (MLML)Principal Investigator
Johnson, KenMoss Landing Marine Laboratories (MLML)Co-Principal Investigator
Armstrong, EvelynUniversity of OtagoContact
Gegg, Stephen R.Woods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

Microbial counts - Eukaryote
 
Data were normalized with the following values:
#  values used for normalizing from "out" by group
#  group    fals(rel)   redFL(rel)   FL/fals ratio
#  group1   0.45        0.64         1.58
#  group2   2.55        9.01         3.57
#  group3   0.33        7.94         27.74
#  group4   nd          nd           nd
#

Data Processing Description

BCO-DMO Processing Notes
Prepared by WHOI OCB-DMO from original multi sheet file :FeEx2_summary01-(c).xls contributed by Doug Mackie
Sheets "euk data", IN (euk), OUT (euk), IN (euk-norm), OUT (euk_norm) used to prepare this dataset.

Changes made to original file:
- Data from the 5 individual sheets combined into one
- Parameter names extensively edited/modified to conform to BCO-DMO convention
- date manually inserted from Cast Log

- HHMM time calculated from supplied decimal hours
 

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Data Files

File
Microbial_Euk.csv
(Comma Separated Values (.csv), 19.88 KB)
MD5:b8c40dde838878c876a458da48203081
Primary data file for dataset ID 3445

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Parameters

ParameterDescriptionUnits
filenamefilename text
descriptiondescription text
cruisecruise text
experimentexperiment text
datedate (GMT) yyyymmdd
timetime (GMT) hhmm
time_decimaltime decimal (GMT) decimal hours
yrdayyrday integer
lonLongitude (West is negative) decimal degrees
latLatitude (South is negative) decimal degrees
castcast integer
depthdepth meters
PatchLocation relative to the Patch text
experiment_dayexperiment day integer
time_of_daytime of day relative to daylight text
beads_to_Falsbeads to Fals ratio
redFLredFL (tbd)
group1_namegroup1 name text
group1_concgroup1 conc cells/ml
group1_conc_meangroup1 conc mean cells/ml
group1_conc_stddevgroup1 conc stddev cells/ml
group1_falsgroup1 fals relative
group1_redFLgroup1 redFL relative
group1_redFL_to_fals_ratiogroup1 redFL to fals ratio ratio
group1_fals_normgroup1 fals norm (tbd)
group1_fals_norm_meangroup1 fals norm mean (tbd)
group1_fals_norm_stddevgroup1 fals norm stddev (tbd)
group1_redFL_normgroup1 redFL norm (tbd)
group1_redFL_norm_meangroup1 redFL norm mean (tbd)
group1_redFL_norm_stddevgroup1 redFL norm stddev (tbd)
group1_redFL_norm_to_fals_norm_ratiogroup1 redFL norm to fals norm ratio ratio
group1_redFL_norm_to_fals_norm_ratio_meangroup1 redFL norm to fals norm ratio mean (tbd)
group1_redFL_norm_to_fals_norm_ratio_stddevgroup1 redFL norm to fals norm ratio stddev (tbd)
group2_namegroup2 name text
group2_concgroup2 conc cells/ml
group2_conc_meangroup2 conc mean cells/ml
group2_conc_stddevgroup2 conc stddev cells/ml
group2_falsgroup2 fals relative
group2_redFLgroup2 redFL relative
group2_redFL_to_fals_ratiogroup2 redFL to fals ratio ratio
group2_fals_normgroup2 fals norm (tbd)
group2_fals_norm_meangroup2 fals norm mean (tbd)
group2_fals_norm_stddevgroup2 fals norm stddev (tbd)
group2_redFL_normgroup2 redFL norm (tbd)
group2_redFL_norm_meangroup2 redFL norm mean (tbd)
group2_redFL_norm_stddevgroup2 redFL norm stddev (tbd)
group2_redFL_norm_to_fals_norm_ratiogroup2 redFL norm to fals norm ratio (tbd)
group2_redFL_norm_to_fals_norm_ratio_meangroup2 redFL norm to fals norm ratio mean (tbd)
group2_redFL_norm_to_fals_norm_ratio_stddevgroup2 redFL norm to fals norm ratio stddev (tbd)
group3_namegroup3 name text
group3_concgroup3 conc cells/ml
group3_conc_meangroup3 conc mean cells/ml
group3_conc_stddevgroup3 conc stddev cells/ml
group3_falsgroup3 fals relative
group3_redFLgroup3 redFL relative
group3_redFL_to_fals_ratiogroup3 redFL to fals ratio ratio
group3_fals_normgroup3 fals norm (tbd)
group3_fals_norm_meangroup3 fals norm mean (tbd)
group3_fals_norm_stddevgroup3 fals norm stddev (tbd)
group3_redFL_normgroup3 redFL norm (tbd)
group3_redFL_norm_meangroup3 redFL norm mean (tbd)
group3_redFL_norm_stddevgroup3 redFL norm stddev (tbd)
group3_redFL_norm_to_fals_norm_ratiogroup3 redFL norm to fals norm ratio (tbd)
group3_redFL_norm_to_fals_norm_ratio_meangroup3 redFL norm to fals norm ratio mean (tbd)
group3_redFL_norm_to_fals_norm_ratio_stddevgroup3 redFL norm to fals norm ratio stddev (tbd)
group4_namegroup4 name text
group4_concgroup4 conc cells/ml
group4_conc_meangroup4 conc mean cells/ml
group4_conc_stddevgroup4 conc stddev cells/ml
group4_falsgroup4 fals relative
group4_reducedredgroup4 reducedred relative to red
group4_redFL_to_fals_ratiogroup4 redFL to fals ratio ratio
group4_fals_normgroup4 fals norm (tbd)
group4_fals_norm_meangroup4 fals norm mean (tbd)
group4_fals_norm_stddevgroup4 fals norm stddev (tbd)
group4_redFL_normgroup4 redFL norm (tbd)
group4_redFL_norm_meangroup4 redFL norm mean (tbd)
group4_redFL_norm_stddevgroup4 redFL norm stddev (tbd)
group4_redFL_norm_to_fals_norm_ratiogroup4 redFL norm to fals norm ratio (tbd)
group4_redFL_norm_to_fals_norm_ratio_meangroup4 redFL norm to fals norm ratio mean (tbd)
group4_redFL_norm_to_fals_norm_ratio_stddevgroup4 redFL norm to fals norm ratio stddev (tbd)


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Instruments

Dataset-specific Instrument Name
CTD profiler
Generic Instrument Name
CTD - profiler
Generic Instrument Description
The Conductivity, Temperature, Depth (CTD) unit is an integrated instrument package designed to measure the conductivity, temperature, and pressure (depth) of the water column. The instrument is lowered via cable through the water column. It permits scientists to observe the physical properties in real-time via a conducting cable, which is typically connected to a CTD to a deck unit and computer on a ship. The CTD is often configured with additional optional sensors including fluorometers, transmissometers and/or radiometers. It is often combined with a Rosette of water sampling bottles (e.g. Niskin, GO-FLO) for collecting discrete water samples during the cast. This term applies to profiling CTDs. For fixed CTDs, see https://www.bco-dmo.org/instrument/869934.


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Deployments

IronExII_MV

Website
Platform
R/V Melville
Start Date
1995-05-13
End Date
1995-06-21
Description
Cruise Summary: 5/14/95 Depart Papeete, Tahiti 5/14/95 to 5/23/95 Transit & Test stations 5/23/95 to 5/29/95 Survey for Fe release 5/29/95 to 5/30/95 Fe release #1 5/30/95 to 6/1/95 In & out sampling 6/1/95 to 6/1/95 Fe release #2 6/1/95 to 6/5/95 In & out sampling 6/5/95 to 6/5/95 Fe release #3 6/6/95 to 6/8/95 In & out sampling 6/8/95 to 6/9/95 Control patch (SF6 only), 2nd Fe patch release (0.4 nM Fe) 6/9/95 to 6/15/95 In & out sampling of all 3 patches 6/15/95 to 6/21/95 Transit to Acapulco, Mexico


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Project Information

Iron Experiment II (IronExII)

Coverage: Equatorial Pacific Ocean


One of two (see IronEx I Oct/Nov 1993) small scale iron fertilization experiments conducted
in the Equatorial Pacific Ocean.

Summary:

5/14/95 Depart Papeete, Tahiti

5/14/95 to 5/23/95 Transit & Test stations

5/23/95 to 5/29/95 Survey for Fe release

5/29/95 to 5/30/95 Fe release #1

5/30/95 to 6/1/95 In & out sampling

6/1/95 to 6/1/95 Fe release #2

6/1/95 to 6/5/95 In & out sampling

6/5/95 to 6/5/95 Fe release #3

6/6/95 to 6/8/95 In & out sampling

6/8/95 to 6/9/95 Control patch (SF6 only), 2nd Fe patch release (0.4 nM Fe)

6/9/95 to 6/15/95 In & out sampling of all 3 patches

6/15/95 to 6/21/95 Transit to Acapulco, Mexico



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Program Information

Iron Synthesis (FeSynth)

Coverage: Global


The two main objectives of the Iron Synthesis program (SCOR Working Group proposal, 2005), are:
1. Data compilation: assembling a common open-access database of the in situ iron experiments, beginning with the first period (1993-2002; Ironex-1, Ironex-2, SOIREE, EisenEx, SEEDS-1; SOFeX, SERIES) where primary articles have already been published, to be followed by the 2004 experiments where primary articles are now in progress (EIFEX, SEEDS-2; SAGE, FeeP); similarly for the natural fertilizations S.O.JGOFS (1992), CROZEX (2004/2005) and KEOPS (2005).

2. Modeling and data synthesis of specific aspects of two or more such experiments for various topics such as physical mixing, phytoplankton productivity, overall ecosystem functioning, iron chemistry, CO2 budgeting, nutrient uptake ratios, DMS(P) processes, and combinations of these variables and processes.

SCOR Working Group proposal, 2005. "The Legacy of in situ Iron Enrichments: Data Compilation and Modeling".
http://www.scor-int.org/Working_Groups/wg131.htm

See also: SCOR Proceedings Vol. 42 Concepcion, Chile October 2006, pgs: 13-16 2.3.3 Working Group on The Legacy of in situ Iron Enrichments: Data Compilation and Modeling.

The first objective of the Iron Synthesis program involves a data recovery effort aimed at assembling a common, open-access database of data and metadata from a series of in-situ ocean iron fertilization experiments conducted between 1993 and 2005. Initially, funding for this effort is being provided by the Scientific Committee on Oceanic Research (SCOR) and the U.S. National Science Foundation (NSF).

Through the combined efforts of the principal investigators of the individual projects and the staff of Biological and Chemical Oceanography Data Management Office (BCO-DMO), data currently available primarily through individuals, disparate reports and data agencies, and in multiple formats, are being collected and prepared for addition to the BCO-DMO database from which they will be freely available to the community.

As data are contributed to the BCO-DMO office, they are organized into four overlapping categories:
1. Level 1, basic metadata
(e.g., description of project/study, general location, PI(s), participants);
2. Level 2, detailed metadata and basic shipboard data and routine ship's operations
(e.g., CTDs, underway measurements, sampling event logs);
3. Level 3, detailed metadata and data from specialized observations
(e.g., discrete observations, experimental results, rate measurements) and
4. Level 4, remaining datasets
(e.g., highest level of detailed data available from each study).

Collaboration with BCO-DMO staff began in March of 2008 and initial efforts have been directed toward basic project descriptions, levels 1 and 2 metadata and basic data, with detailed and more detailed data files being incorporated as they become available and are processed.

Related file

Program Documentation

The Iron Synthesis Program is funded jointly by the Scientific Committee on Oceanic Research (SCOR) and the U.S. National Science Foundation (NSF).



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)
Office of Naval Research (ONR)

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