Dataset: Haplotypes Moorea 2019

Name: Estimates of bleaching mortality and colony size for different Pocillopora haplotypes at Moorea in 2019
Published: 2021-07-23
Keywords: oceans

Cite This Dataset

DOI:10.26008/1912/bco-dmo.856424.1

Spatial Extent: N:-17.5333 E:-149.8333 S:-17.5333 W:-149.8333

Temporal Extent: 2019-02 - 2019-02

Project:

Collaborative research: Coral community resilience: testing the role of hidden diversity in pocilloporid corals at Moorea (Pocilloporid Coral Diversity)

Principal Investigator:

Scott Burgess (Florida State University, FSU)

Co-Principal Investigator:

Peter J. Edmunds (California State University Northridge, CSUN)

BCO-DMO Data Manager:

Shannon Rauch (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2021-07-23

Restricted:

Validated:

Yes

Current State:

Final no updates expected

Estimates of bleaching mortality and colony size for different Pocillopora haplotypes at Moorea in 2019

Abstract:

This dataset includes estimates of bleaching mortality and colony size for different Pocillopora haplotypes at Moorea in 2019. These data have been published in Figure 5, Figure 6, and Table 1 of Burgess et al. (2021).

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Archival Copy

Version Date	Archive	Persistent Identifier	Date Assigned
2021-07-23	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.26008/1912/bco-dmo.856424.1	2021-07-26

Methods & Sampling

Tissue was collected in February 2019 from a total of 68 colonies from Sites 1 (n = 7), 2 (n = 30), 3 (n = 19), and 5 (n = 12). Of these 68 colonies, 51 colonies were tracked between February 2019 (before the bleaching) and August 2019 (after the bleaching). Tissue was collected in August from a total of 394 colonies from Sites 1 (n = 65), 2 (n = 69), 3 (n = 42), 4 (n = 83), 5 (n = 68), and 6 (n = 67).

The mitochondrial Open Reading Frame (mtORF) marker, using the FATP6.1 and RORF primers found in Flot et al. (2008), was used to haplotype individuals. P. meandrina and P. eydouxi were differentiated using a restriction fragment length polymorphism (RFLP) gel-based assay following Johnston et al. (2018). Samples were identified to haplotype based on previously published sequences of mtORF haplotypes, using the naming conventions in Pinzón and LaJeunesse (2011), Pinzón et al. (2013), Forsman et al. (2013), Edmunds et al. (2016), and Johnston et al. (2017).

Data Processing Description

Data were processed using R 3.6.3. These data have been published in Figure 5, Figure 6, and Table 1 of Burgess et al. (2021).

BCO-DMO Processing:
- renamed fields (columns) to conform with BCO-DMO naming conventions;
- replaced "NA" with "nd" to indicate "no data".

Data Files

File
haplotypes_2019.csv (Comma Separated Values (.csv), 17.14 KB) MD5:43482d084d9962730eccd10dc1c420c1 Primary data file for dataset ID 856424

Supplemental Files

File
Figure_5_Make.R (Octet Stream, 10.33 KB) MD5:2833188b77deec4d0e8e5ceaa458949e R code to produce Figure 5, and the accompanying analyses presented in the text, in: Burgess SC, Johnston EC, Wyatt ASJ, Leichter JJ, Edmunds PJ (2021) Response diversity in corals: hidden differences in bleaching mortality among cryptic Pocillopora species. Ecology. Uses 'Data on Haplotypes 2019.csv'
Figure_6_Make.R (Octet Stream, 7.97 KB) MD5:6ab813dc383b6d39829e6abb2d3e7d2a R code to produce Figure 6, and the accompanying analyses presented in the text, in: Burgess SC, Johnston EC, Wyatt ASJ, Leichter JJ, Edmunds PJ (2021) Response diversity in corals: hidden differences in bleaching mortality among cryptic Pocillopora species. Ecology. Uses 'Data on Haplotypes 2019.csv'

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-1829867
NSF Division of Ocean Sciences	OCE-1829898

Deployments

None available yet

Instruments

None available yet

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
Photos_max_length_cm	Longest diameter (in centimeters) along the longest axis of the coral in planar view from the photoquadrat images taken in February (for Trip 1) or August (for Trip 2) 2019	centimeters (cm)	diameter
Trip	1 = February 2019; 2= August 2019	unitless	event
Mortality	0 = alive in August 2019; 1 = dead in August 2019	unitless	sample_descrip
Site	Sampling site; label corresponds to the site used in the Moorea Coral Reef Long-Term Ecological Research (MCR-LTER) program	unitless	site
Species_haplotype	mtORF haplotype identifier	unitless	species
Species	The taxon name ascribed to the mtORF haplotype	unitless	species

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Dataset: Haplotypes Moorea 2019