Dataset: Pooled sequencing data from field-collected Eurytemora affinis
Data Citation:
Stern, D. B., Lee, C. E. (2022) Pooled sequencing data of field-collected Eurytemora affinis copepods from nine locations in North America collected October 2012 to March 2014. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2022-11-12 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.883227.1 [access date]
Terms of Use
This dataset is licensed under Creative Commons Attribution 4.0.
If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.
DOI:10.26008/1912/bco-dmo.883227.1
Spatial Extent: N:48.002 E:-69.423 S:29.254 W:-96.797
Temporal Extent: 2012 - 2014
Project:
Evolutionary Responses to Global Changes in Salinity and Temperature
(Evolutionary genomics of a copepod)
Principal Investigator:
Carol E. Lee (University of Wisconsin, UW-Madison)
Scientist:
David B. Stern (University of Wisconsin, UW-Madison)
BCO-DMO Data Manager:
Dana Stuart Gerlach (Woods Hole Oceanographic Institution, WHOI BCO-DMO)
Version:
1
Version Date:
2022-11-12
Restricted:
No
Validated:
Yes
Current State:
Final no updates expected
Pooled sequencing data of field-collected Eurytemora affinis copepods from nine locations in North America collected October 2012 to March 2014
Abstract:
This dataset consists of pooled whole-genome sequencing data (Pool-seq) of Eurytemora affinis complex copepods collected from nine locations across North America. Each sample consists of 100 pooled individuals with an approximate 1:1 sex ratio, sequenced using the Nextera DNA library preparation kit and Illumina HiSeq platform. Population sampling targeted nine wild populations of the E. affinis complex from two genetically distinct lineages (the Gulf and Atlantic clades) including both native saline and invaded freshwater locations. The data were generated to investigate evolutionary genomic factors underlying successful invasion of freshwater habitats and were collected by Drs. Martin Bontrager, David B. Stern, and Carol E. Lee of the University of Wisconsin-Madison.