1b:I[42426,["/_next/static/immutable/chunks/1xctgzqre-wsy.js","/_next/static/immutable/chunks/06_-wz6pdtp2b.js","/_next/static/immutable/chunks/30e52g49hg40p.js","/_next/static/immutable/chunks/02yq6tul2z-oh.js","/_next/static/immutable/chunks/10bx_ec2vj7n_.js","/_next/static/immutable/chunks/33bfn03fo8xnt.js","/_next/static/immutable/chunks/0tfjf78scu61b.js","/_next/static/immutable/chunks/31xnvej4n1bi9.js"],"default"] 1c:T785,* Sheet "invert data" of submitted file FishSurveys2022_FinalNSF.xlsx (submitted to BCO-DMO 2024-04-18) rows 1-198 were imported into the BCO-DMO data system for this dataset. Excel rows 199-395 were exact duplicates and not included (decision discussed with the original submitter to verify this is correct action). * Sheet "metadata" contained multiple tables. ** The table with columns "date, notes" was exported added to the dataset as supplemental file fish_and_invert_survey_notes.csv." ** The note with heading "Survey overview" was added to the Methods & Sampling section of the metadata. ** The site information with columns "reef name,GPS data" was exported as a separate supplemental file reef_cluster_site_list.csv. Additional columns were added for the site description, and the separate lat, lon in decimal degree format. * Column names adjusted to conform to BCO-DMO naming conventions designed to support broad re-use by a variety of research tools and scripting languages. [Only numbers, letters, and underscores. Can not start with a number] * Date converted to ISO 8601 format, additional column ISO_DateTime_UTC added (using source columns Date,Time which were local time Abaco, Eastern Time (EST/EDT)). * columns cluster_lat,cluster_lon added to the fish data table from the site information (using reef name provided in "Cluster" column). * Note: These data include currently unaccepted synonyms of the accepted taxon names. The supplemental file fish_and_invert_species_list.csv which includes names and identifiers for both the names used in the dataset and the equivalent currently accepted names (as of 2024-02-26). * One name appears only in the metadata "...typically spider crabs (Mithrax spinosissimus..." LSID (urn:lsid:marinespecies.org:taxname:421994) has the currently accepted name "Maguimithrax spinosissimus" LSID (urn:lsid:marinespecies.org:taxname:987079)1d:Tf79,NSF Award Abstract: Tropical coastal marine ecosystems (e.g., coral reefs, seagrass beds, and mangroves) are among the most productive ecosystems in the world providing important services, such as fisheries, to millions of people. Despite this, they are also among the most impaired ecosystems, necessitating improved understanding of the mechanisms that underpin their productivity. This project seeks to understand the key factors that drive ecosystem production in a degraded coastal ecosystem in Haiti using artificial reefs. Past research has shown that artificial reefs have substantial potential to increase the number and diversity of plants and animals, but the extent to which this can be achieved at scales relevant to society remains unknown. This project is constructing clusters of artificial reefs to test how (1) spatial arrangement and (2) fishing pressure (fished/not fished) influence the productivity of seagrass, coral, and fish over the course of four years. The fishing treatment is being implemented through collaborations with local fishers whereby small-scale no-take zones are created around three of the six artificial reef clusters. A unique aspect of the research is that it capitalizes on the experimental design to simultaneously achieve an important conservation initiative, while testing ecological theory. Community engagement and outreach are integrated directly into the research and local fishers are being surveyed to assess the extent to which fishing occurred on any of the artificial reefs. This research represents a novel effort to integrate experimentation with cutting-edge community-based conservation initiatives in one of the most impoverished regions of the world. The project is improving strategies for conservation and reef management. Identifying the factors that regulate the structure and function of ecosystems is a fundamental challenge for ecological theory and applied science. This challenge is often framed within the context of Top-Down (TD) versus Bottom-Up (BU) regulation, but the extent to which this framework can predict processes in complex, real-world ecosystems is not fully understood. It is now widely recognized that TD/BU factors do not act in isolation. For example, in many ecosystems, consumers contribute to both TD (via consumption) and BU (via excretion) pathways. Environmental factors, including human-induced change, can further alter the nature of these interactions. Quantifying the strength of TD and BU pathways and the extent to which they regulate the structure and function in highly dynamic ecosystems requires an experimental system that is sufficiently tractable that all its components can be quantified, while still being representative of real ecosystems. To address this challenge, this research project creates a unique ecosystem-scale artificial reef (AR) experiment in Haiti to test how two factors (AR structure, and fishing pressure) alter the strength of independent and interactive TD and BU pathways to regulate the structure and function of real-world reef ecosystems. Over the course of four years, the production of seagrass (surrounding the ARs), coral (transplanted onto the ARs), and fish (in and around the ARs) is being measured, providing a quantitative assessment of ecosystem-level production across the two treatments. Linear and structural equation models are used to measure the independent and interactive strengths TD and BU pathways, and to identify the suite of directional relationships between each trophic level that best predict overall ecosystem production. Harnessing the ability to use ecosystem-scale experiments and quantify production across all trophic levels in a highly complex, real-world system enables an unprecedented test of TD/BU theory. This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.6:["$","$L1b",null,{"dataset":{"_id":"922236","description":"

See \"Related Datasets\" section for access to data and metadata from other datasets from the same surveys.

\n","problem":"","acquisition":"

During the fish surveys were also recorded large invertebrates on the reefs with particular focus on any lobster (Panulirus argus, urn:lsid:marinespecies.org:taxname:382891) for which we recorded only if the individual was of “legal” size (which is any individual with a tail > 5 inches - noted as “legal” or “not legal” in a separate column in dataset). We also recorded “crabs” – typically spider crabs (Mithrax spinosissimus, urn:lsid:marinespecies.org:taxname:421994) for which we opportunistically recorded carapace width.

\n","processing":"","bcodmoProcessing":"$1c","title":"Invertebrate data from fish and seagrass surveys on clusters of artificial reefs at the Abaco Islands, Bahamas in 2021 and 2022","nickname":"Invertebrate Data","dataUrl":"","currentState":"Final no updates expected","currentStateId":"7","validated":true,"restricted":false,"version":"1","version_date":"2024-03-14T04:00:00.000Z","abstract":"Invertebrate data from fish and seagrass surveys on clusters of artificial reefs at the Abaco Islands, Bahamas in May of 2022. Data are presented for site PN, which was constructed in May 2021 at the Bight of Old Robinson, Great Abaco. At the site three clusters of nine reefs were constructed. Each cluster was separated by at least 150 m and were constructed at ~3 m depth.","citation":"Allgeier, J., Munsterman, K. (2024) Invertebrate data from fish and seagrass surveys on clusters of artificial reefs at the Abaco Islands, Bahamas in 2021 and 2022. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-03-14 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.922236.1 [access date]","citationParts":{"identifier":"doi:10.26008/1912/bco-dmo.922236.1","versionDate":"2024-03-14","versionId":"1","year":"2024","title":"Invertebrate data from fish and seagrass surveys on clusters of artificial reefs at the Abaco Islands, Bahamas in 2021 and 2022","authors":"Allgeier, J., Munsterman, K.","publisher":"Biological and Chemical Oceanography Data Management Office (BCO-DMO)."},"doi":"10.26008/1912/bco-dmo.922236.1","release_date":null,"field_dataset_location":"Abaco Islands, The Bahamas","temporal_extent":{"start":"2021-05-30T04:00:00.000Z","end":"2022-12-25T05:00:00.000Z"},"temporal":{"resolution":"time:unitDay","type":"time:Interval","start":{"value":"1622347200","label":"2021-05-30"},"end":{"value":"1671944400","label":"2022-12-25"}},"spatial_extent":{"shape":"polygon","center":{"latitude":26.343740180334,"longitude":-77.008945526982},"wkt":"POLYGON ((-77.01037 26.341, -77.00752 26.341, -77.00752 26.34648, -77.01037 26.34648, -77.01037 26.341))","north":26.34648,"east":-77.00752,"south":26.341,"west":-77.01037},"dataset_type":["Other Field Results"],"keywords":["oceans"],"data_files":[{"id":"926098","title":"922236_v1_invert-data.csv","url":"https://datadocs.bco-dmo.org/dataset/922236/file/N7GWNgNHZKX9Px/922236_v1_invert-data.csv","showTableUrl":"https://www.bco-dmo.org/dataset/922236/data/view/926098","description":"Primary data file for dataset ID 922236, version 1","filename":"922236_v1_invert-data.csv","bytesize":15465,"checksum":{"value":"1483ee2d4298346b93ce7d7bae1456e9","Algorithm":{"_id":"190","name":"MD5"}},"mimetype":"text/csv","fileType":{"_id":"192","name":"Comma Separated Values (.csv)"},"isErddap":"bcodmo_dataset_922236_v1","date":"","isPublicDuringEmbargo":false,"primaryDataFile":true,"showTable":true,"restricted":false}],"supplemental_files":[{"id":"926094","title":"Fish and Invertebrate Species List (with Taxon IDs)","url":"https://datadocs.bco-dmo.org/dataset/922236/file/LAGWLOQTygD0R/fish_and_invert_species_list.csv","showTableUrl":"https://www.bco-dmo.org/dataset/922236/data/view/926094","description":"A supplemental table containing organism identifications (common and latin names). These were matched at the World Register of Marine Species (WoRMS) and the taxon status (accepted, unaccepted) and taxon identifiers were added. Some are not the currently accepted synonyms, an additional column containing the currently accepted synonyms (as of 2024-02-26) was added.\n\nColumn information (name, definition):\n\ntype, organism type (fish or invert)\ncommon_name, common name as used in the main data table for the dataset.\nspecies_or_lowest_identifiable_taxon, Scientific name or lowest identifiable taxon for the common_name category.\nAphiaID, taxon identifier (AphiaID, see WoRMS) for the \"species_or_lowest_identifiable_taxon\"\nLSID, Lifescience Identifier (LSID) for the \"species_or_lowest_identifiable_taxon\"","filename":"fish_and_invert_species_list.csv","bytesize":5012,"checksum":{"value":"12bf9ccb6ca461259cf841ff70c59cc8","Algorithm":{"_id":"190","name":"MD5"}},"mimetype":"text/csv","fileType":{"_id":"192","name":"Comma Separated Values (.csv)"},"isErddap":"","date":"","isPublicDuringEmbargo":false,"primaryDataFile":false,"showTable":true,"restricted":false},{"id":"926095","title":"Fish and Invertebrate Survey Notes","url":"https://datadocs.bco-dmo.org/dataset/922236/file/YVZq2w2upZ5kmg/fish_and_invert_survey_notes.csv","showTableUrl":"https://www.bco-dmo.org/dataset/922236/data/view/926095","description":"Notes from the fish and invertebrate survey. Columns : date, notes.","filename":"fish_and_invert_survey_notes.csv","bytesize":1339,"checksum":{"value":"9602c4f537e21ec6b78ab1fef0520d64","Algorithm":{"_id":"190","name":"MD5"}},"mimetype":"text/csv","fileType":{"_id":"192","name":"Comma Separated Values (.csv)"},"isErddap":"","date":"","isPublicDuringEmbargo":false,"primaryDataFile":false,"showTable":true,"restricted":false},{"id":"926097","title":"Reef Cluster Site List","url":"https://datadocs.bco-dmo.org/dataset/922236/file/wnx7OzWhP3Y48Z/reef_cluster_site_list.csv","showTableUrl":"https://www.bco-dmo.org/dataset/922236/data/view/926097","description":"Artificial reef cluster site list for fish and invertebrate surveys conducted in 2022. Two different sites: reefs with name PN# were constructed in May 2021, and CM# were constructed in May 2022. At each site three clusters of nine reefs were constructed. Each cluster was separated by at least 150 m and were constructed at ~3 m depth.\n\nColumn name, description, units:\nreef_name, Reef cluster identifier\nlat_dd, site latitude, decimal degrees\nlon_dd, site longitude, decimal degrees\nConstruction_Month, Month of reef construction (format: %b, .e.g. \"May\")\nConstruction_Year, Year of reef construction (format: %Y, e.g. \"2021\")\nSite_Description, Description of the site location and island.","filename":"reef_cluster_site_list.csv","bytesize":499,"checksum":{"value":"c1c109da3d9dd8eec65fca35dcf3f838","Algorithm":{"_id":"190","name":"MD5"}},"mimetype":"text/csv","fileType":{"_id":"192","name":"Comma Separated Values (.csv)"},"isErddap":"","date":"","isPublicDuringEmbargo":false,"primaryDataFile":false,"showTable":true,"restricted":false}],"roles":[{"role":{"_id":"138","name":"Principal Investigator"},"performedBy":{"_id":"850020","name":"Jacob Allgeier"},"performedAtOrganization":{"_id":"502586","name":"University of Michigan"}},{"role":{"_id":"128","name":"Student"},"performedBy":{"_id":"922230","name":"Katrina Munsterman"},"performedAtOrganization":{"_id":"502586","name":"University of Michigan"}},{"role":{"_id":"145","name":"BCO-DMO Data Manager"},"performedBy":{"_id":"643627","name":"Amber D. York"},"performedAtOrganization":{"_id":"191","name":"Woods Hole Oceanographic Institution"}}],"deployments":[],"funding":[{"_id":"850017","name":"OCE-1948622","fundingSource":{"_id":"355","name":"NSF Division of Ocean Sciences"},"url":"https://www.nsf.gov/awardsearch/show-award?AWD_ID=1948622"}],"instruments":[],"parameters":[{"_id":"922435","name":"Observer","format":"","frictionlessType":"string","description":"

observer

","units":{"_id":"","name":"unitless"},"type":{"_id":"1129","name":"person","description":"

scientist responsible for the data from a given sampling event

"}},{"_id":"922436","name":"Date","format":"%Y-%m-%d","frictionlessType":"date","description":"

start date of survey (local time zone, Eastern Time EST/EDT)

","units":{"_id":"","name":"unitless"},"type":{"_id":"799","name":"date_local","description":"

local month, day and year, usually as a text string, e.g. feb10_1995. It is better to use one of the other forms of presenting date and time data so that the data can be used in computations and for comparisons. Note, if the string begins with numbers but also includes letters, there may be problems using the field name for retrieval.

"}},{"_id":"922437","name":"Time","format":"","frictionlessType":"string","description":"

start time of survey (local time zone, Eastern Time EST/EDT)

","units":{"_id":"","name":"unitless"},"type":{"_id":"1007","name":"time_local","description":"

time of day, local time, using 2400 clock format

"}},{"_id":"922438","name":"Assembly_day","format":"","frictionlessType":"integer","description":"

days after being built

","units":{"_id":"","name":"unitless"},"type":{"_id":"1740","name":"site_descrip","description":"

Description or characteristics of a sampling site

"}},{"_id":"922439","name":"Cluster","format":"","frictionlessType":"string","description":"

unique cluster ID

","units":{"_id":"","name":"unitless"},"type":{"_id":"1124","name":"site","description":"

Sampling site identification.

"}},{"_id":"922440","name":"cluster_lat","format":"","frictionlessType":"number","description":"

latitude of cluster location

","units":{"_id":"","name":"decimal degrees"},"type":{"_id":"730","name":"latitude","description":"

latitude, in decimal degrees, North is positive, negative denotes South; Reported in some datasets as degrees, minutes

"}},{"_id":"922441","name":"cluster_lon","format":"","frictionlessType":"number","description":"

longitude of cluster location

","units":{"_id":"","name":"decimal degrees"},"type":{"_id":"731","name":"longitude","description":"

longitude, in decimal degrees, East is positive, negative denotes West; Reported in some datasets as degrees, minutes

"}},{"_id":"922442","name":"Reef","format":"","frictionlessType":"integer","description":"

unique reef ID

","units":{"_id":"","name":"unitless"},"type":{"_id":"1740","name":"site_descrip","description":"

Description or characteristics of a sampling site

"}},{"_id":"922443","name":"Species","format":"","frictionlessType":"string","description":"

Organism identification category (this is the "common_name" column in Supplemental File: "Fish and Invertebrate Species List (with Taxon IDs)" )

","units":{"_id":"","name":"unitless"},"type":{"_id":"476054","name":"animal_group","description":"

Animal group or living style. Organism identification category (e.g. Medusa, anemone, cleaner shrimp, Zoanthid, Scleractinian).

"}},{"_id":"922444","name":"Count","format":"","frictionlessType":"string","description":"

Abundance (count per individual)

","units":{"_id":"","name":"unitless"},"type":{"_id":"1079","name":"count","description":"

Number of items or individuals counted in sample or sample fraction

"}},{"_id":"922445","name":"Legal","format":"","frictionlessType":"string","description":"

“Legal” and “Not-legal” refer to the legal harvest size of lobster in the surveys which is any individual with a tail > 5 inches.

","units":{"_id":"","name":"unitless"},"type":{"_id":"1741","name":"sample_descrip","description":"

text description or other traits of the sample collected

"}},{"_id":"922446","name":"Not_legal","format":"","frictionlessType":"string","description":"

“Legal” and “Not-legal” refer to the legal harvest size of lobster in the surveys which is any individual with a tail > 5 inches.

","units":{"_id":"","name":"unitless"},"type":{"_id":"1741","name":"sample_descrip","description":"

text description or other traits of the sample collected

"}},{"_id":"922447","name":"Notes","format":"","frictionlessType":"string","description":"

notes from datasheet, etc

","units":{"_id":"","name":"unitless"},"type":{"_id":"778","name":"comment","description":"

free text comments, may only have meaning to submitting PI

"}},{"_id":"922448","name":"ISO_DateTime_UTC","format":"%Y-%m-%dT%H:%MZ","frictionlessType":"datetime","description":"

Survey start DateTime with timezone (UTC, ISO 8601 format)

","units":{"_id":"","name":"unitless"},"type":{"_id":"1908","name":"ISO_DateTime_UTC","description":"

Date/Time (UTC) ISO formatted
\nThis standard is based on ISO 8601:2004(E) and takes on any of the following forms:
\n2009-08-30T09:05:00[.xx] (local time)
\n2009-08-30T14:05:00[.xx]Z (UTC time)
\n2009-08-30T14:05:00[.xx]-05:00
\nThe dashes and the colons can be dropped.
\nThe T can also be dropped \"by mutual agreement\", but one needs the trailing Z if the time is UTC.

Sample ISO_datetime_utc:
\n2009-08-30T14:05:00[.xx]Z (UTC time)

Format: YYYY-mm-ddTHH:MM:SS[.xx]Z (UTC time)

"}}],"related_publications":[],"related_datasets":[{"_id":"922228","name":"Fish Data","url":"","relation_type":"IsRelatedTo","type_desc":"

The dataset is related to another dataset.

\n","relation_desc":"Datasets part of the same fish and seagrass surveys conducted in 2022 on artificial reef clusters in the Abaco Islands (created in 2021 and 2022).","citation":"Allgeier, J., Munsterman, K. (2024) Species density from Braun-Blanquet seagrass surveys on clusters of artificial reefs at the Abaco Islands, Bahamas in May of 2022. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-03-14 doi:10.26008/1912/bco-dmo.922248.1"}],"services":[{"grouping":"","items":[{"name":"View Data","description":"An in-browser view of the primary tabular data file","url":"https://www.bco-dmo.org/dataset/922236/data/view","contentType":"text/html","actionType":"view"}]},{"grouping":"ERDDAP","items":[{"name":"SUBSET DATA","description":"","url":"https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922236_v1.html","contentType":"text/html","actionType":"tool"},{"name":"VIEW TABLE","description":"","url":"https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922236_v1.htmlTable","contentType":"text/html","actionType":"view"},{"name":"CSV","description":"","url":"https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922236_v1.csv","contentType":"text/csv","actionType":"download"},{"name":"TSV","description":"","url":"https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922236_v1.tsv","contentType":"text/tsv","actionType":"download"},{"name":"MATLAB","description":"","url":"https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922236_v1.mat","contentType":"text/x-matlab","actionType":"download"},{"name":"netCDF","description":"","url":"https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922236_v1.nc","contentType":"application/x-netcdf","actionType":"download"}]},{"grouping":"Metadata","items":[{"name":"HTML","description":"A simple HTML page of the dataset metadata","url":"https://www.bco-dmo.org/dataset/922236/description","contentType":"text/html","actionType":"view"},{"name":"PDF","description":"A PDF of the HTML dataset metadata","url":"https://www.bco-dmo.org/dataset/922236/Dataset_description.pdf","contentType":"application/pdf","actionType":"download"},{"name":"ISO 19115-2 (NOAA Profile)","description":"","url":"https://www.bco-dmo.org/dataset/922236/iso","contentType":"application/xml","actionType":"download"}]}],"programs":[],"projects":[{"_id":"850018","name":"Using novel ecosystem-scale experiments to quantify drivers of reef productivity in a heavily impacted coastal ecosystem","acronym":"Reef Production Drivers","description":"$1d"}],"archives":[{"id_value":"10.26008/1912/bco-dmo.922236.1","url":"https://doi.org/10.26008/1912/bco-dmo.922236.1","date_assigned":"2024-04-26","version_date":"2024-03-14","archiver":"Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)","archiver_id":"272"}],"license":{"name":"Creative Commons Attribution 4.0","id":"CC-BY-4.0","uri":"https://creativecommons.org/licenses/by/4.0/","spdxUri":"https://spdx.org/licenses/CC-BY-4.0"},"metrics":{"views":{"count":161},"downloads":{"count":4392}}},"fileId":"926094"}]