HPLC estimates of phytoplankton pigments from cruise RR2201 on R/V Roger Revelle from Jan to Feb 2022 in the Argo Basin region off NW Australia

Website: https://www.bco-dmo.org/dataset/969869
Data Type: Cruise Results
Version: 1
Version Date: 2025-07-29

Project
» Collaborative Research: Mesoscale variability in nitrogen sources and food-web dynamics supporting larval southern bluefin tuna in the eastern Indian Ocean (BLOOFINZ-IO)

Program
» Second International Indian Ocean Expedition (IIOE-2)
ContributorsAffiliationRole
Landry, Michael R.University of California-San Diego Scripps (UCSD-SIO)Principal Investigator
Mickle, AudreyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
This dataset contains HPLC estimates of phytoplankton pigments from cruise RR2201 on R/V Roger Revelle (BLOOFINZ-IO, January-February 2022) in the Argo Basin region off NW Australia.


Coverage

Location: Northwest Australia, Argo Basin (eastern Indian Ocean)
Spatial Extent: N:-15.349 E:118.142 S:-17.126 W:114.135
Temporal Extent: 2022-02-03 - 2022-02-22

Methods & Sampling

Seawater was collected from Niskin bottles on early-morning CTD hydrocasts (~02:00 local time) at 6 depths in the euphotic zone. Samples (2.3 L) for HPLC analyses of chlorophyll and carotenoid pigments were concentrated onto GF/F filters under low vacuum pressure, immediately frozen in liquid nitrogen and stored at -80°C. The samples were extracted for 2 h in 100% methanol, disrupted by sonication, clarified by GF/F filtration and analyzed (Agilent Technologies 1200 Series) at the analytical facility of the Institut de la Mer de Villefranche (CNRS-France) according to procedures described in Ras et al. (2008).


BCO-DMO Processing Description

- Imported "BLOOFINZ-IO_HPLC Pigments_BCO-DMO Submission.xlsx" into BCO-DMO system
- Converted date to ISO 8601 format YYYY-MM-DD
- Export file as "969869_v1_rr2201_phytoplankton_pigments.csv"


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Data Files

File
969869_v1_rr2201_phytoplankton_pigments.csv
(Comma Separated Values (.csv), 18.87 KB)
MD5:c34df700757b72cbc85a916b89143f2f
Primary data file for dataset ID 969869, version 1

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Related Publications

Landry, M. R. (2025). R/V Roger Revelle Cruise RR2201 BLOOFINZ-IO Cruise Report. Eastern Indian Ocean larval tuna habitat study 20 January – 14 March 2022. http://hdl.handle.net/1834/43464
General
Ras, J., Claustre, H., & Uitz, J. (2008). Spatial variability of phytoplankton pigment distributions in the Subtropical South Pacific Ocean: comparison between in situ and predicted data. Biogeosciences, 5(2), 353–369. https://doi.org/10.5194/bg-5-353-2008
Methods
Selph, K.E., Swalethorp, R., Stukel, M.R., Kelly, T.B., Knapp, A.N., Fleming, K., Hernandez, T., & Landry, M.R. (2021). Phytoplankton community composition and biomass in the oligotrophic Gulf of Mexico. Journal of Plankton Research. doi:10.1093/plankt/fbab006
Results

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Parameters

ParameterDescriptionUnits
Cruise

Cruise experiments were conducted on

unitless
Event

Unique event number in UTC time as YYYYMMDD.mmss.###, where ### distinguishes events entered within the same minute

unitless
ISO_DateTime_UTC

Date and time (UTC) of CTD deployment in ISO 8601 format %Y-%m-%dT%H:%MZ

unitless
Latitude

Latitude (North is positive; South is negative)

decimal degrees
Longitude

Longitude (East is positive; West is negative)

decimal degrees
Cycle_Day

Lagrangian cycle experiments following a drogued drifter are noted as Cycle,Day, e.g., C1,D1, C1,D2, etc. EOC = end of cycle; e.g., EOC1.

unitless
CTD_Cast

CTD cast number of initial water collection in Event Log

unitless
Depth

Depth (meters) of initial seawater collection and in situ incubation

meters (m)
Chl_c3

Concentration of chlorophyll c3

ng/L
Chl_c12

Concentration of chlorophyll c1+c2

ng/L
Chlide_a

Concentration of chlorophyllide a

ng/L
Perid

Concentration of peridinin

ng/L
Phide_a

Concentration of pheophorbide a

ng/L
But_fuco

Concentration of 19′‐butanoyloxyfucoxanthin

ng/L
Fuco

Concentration of fucoxanthin

ng/L
Neo

Concentration of neoxanthin

ng/L
Pras

Concentration of prasinoxanthin

ng/L
Viola

Concentration of violaxanthin

ng/L
Hex_fuco

Concentration of 19′‐hexanoyloxyfucoxanthin

ng/L
Asta

Concentration of astaxanthin

ng/L
Diadino

Concentration of diadinoxanthin

ng/L
Anthera

Concentration of antheraxanthin

ng/L
Allo

Concentration of alloxanthin

ng/L
Diato

Concentration of diatoxanthin

ng/L
Zea

Concentration of zeaxanthin

ng/L
Lut

Concentration of lutein

ng/L
Bac_Chl_a

Concentration of bacteriochlorophyll a

ng/L
DV_Chl_b

Concentration of divinyl chlorophyll b

ng/L
MV_Chl_b

Concentration of monovinyl chlorophyll b

ng/L
T_Chl_b

Concentration of total chlorophyll b

ng/L
DV_Chl_a

Concentration of divinyl chlorophyll a

ng/L
MV_Chl_a

Concentration of monovinyl chlorophyll a

ng/L
T_Chl_a

Concentration of total chlorophyll a

ng/L
Phytin_a

Concentration of phaeophytin a

ng/L
T_Car

Concentration of total carotenoids

ng/L


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Instruments

Dataset-specific Instrument Name
CTD
Generic Instrument Name
CTD Sea-Bird SBE 911plus
Dataset-specific Description
Seawater was collected from Niskin bottles on early-morning CTD hydrocasts (~02:00 local time) at 6 depths in the euphotic zone. 
Generic Instrument Description
The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics

Dataset-specific Instrument Name
High Performance Liquid Chromatography, Agilent Technologies 1200 Series
Generic Instrument Name
High-Performance Liquid Chromatograph
Dataset-specific Description
The samples were extracted for 2 h in 100% methanol, disrupted by sonication, clarified by GF/F filtration and analyzed (Agilent Technologies 1200 Series) at the analytical facility of the Institut de la Mer de Villefranche (CNRS-France) according to procedures described in Ras et al. (2008).
Generic Instrument Description
A High-performance liquid chromatograph (HPLC) is a type of liquid chromatography used to separate compounds that are dissolved in solution. HPLC instruments consist of a reservoir of the mobile phase, a pump, an injector, a separation column, and a detector. Compounds are separated by high pressure pumping of the sample mixture onto a column packed with microspheres coated with the stationary phase. The different components in the mixture pass through the column at different rates due to differences in their partitioning behavior between the mobile liquid phase and the stationary phase.

Dataset-specific Instrument Name
CTD Niskin bottles
Generic Instrument Name
Niskin bottle
Dataset-specific Description
Seawater was collected from Niskin bottles on early-morning CTD hydrocasts (~02:00 local time) at 6 depths in the euphotic zone. 
Generic Instrument Description
A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc.


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Deployments

RR2201

Website
Platform
R/V Roger Revelle
Report
Start Date
2022-01-20
End Date
2022-03-14
Description
See more information at R2R: https://www.rvdata.us/search/cruise/RR2201


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Project Information

Collaborative Research: Mesoscale variability in nitrogen sources and food-web dynamics supporting larval southern bluefin tuna in the eastern Indian Ocean (BLOOFINZ-IO)

Coverage: Eastern Indian Ocean, Indonesian Throughflow area, and the Gulf of Mexico


NSF Award Abstract:
The small area between NW Australia and Indonesia in the eastern Indian Ocean (IO) is the only known spawning ground of Southern Bluefin Tuna (SBT), a critically endangered top marine predator. Adult SBT migrate thousands of miles each year from high latitude feeding areas to lay their eggs in these tropical waters, where food concentrations on average are below levels that can support optimal feeding and growth of their larvae. Many critical aspects of this habitat are poorly known, such as the main source of nitrogen nutrient that sustains system productivity, how the planktonic food web operates to produce the unusual types of zooplankton prey that tuna larvae prefer, and how environmental differences in habitat quality associated with ocean fronts and eddies might be utilized by adult spawning tuna to give their larvae a greater chance for rapid growth and survival success. This project investigates these questions on a 38-day expedition in early 2021, during the peak time of SBT spawning. This project is a US contribution to the 2nd International Indian Ocean Expedition (IIOE-2) that advances understanding of biogeochemical and ecological dynamics in the poorly studied eastern IO. This is the first detailed study of nitrogen and carbon cycling in the region linking Pacific and IO waters. The shared dietary preferences of SBT larvae with those of other large tuna and billfish species may also make the insights gained broadly applicable to understanding larval recruitment issues for top consumers in other marine ecosystems. New information from the study will enhance international management efforts for SBT. The shared larval dietary preferences of large tuna and billfish species may also extend the insights gained broadly to many other marine top consumers, including Atlantic bluefin tuna that spawn in US waters of the Gulf of Mexico. The end-to-end study approach, highlights connections among physical environmental variability, biogeochemistry, and plankton food webs leading to charismatic and economically valuable fish production, is the theme for developing educational tools and modules through the "scientists-in-the-schools" program of the Center for Ocean-Atmospheric Prediction Studies at Florida State University, through a program for enhancing STEM learning pathways for underrepresented students in Hawaii, and through public outreach products for display at the Birch Aquarium in San Diego. The study also aims to support an immersive field experience to introduce talented high school students to marine research, with the goal of developing a sustainable marine-related educational program for underrepresented students in rural northwestern Florida.

Southern Bluefin Tuna (SBT) migrate long distances from high-latitude feeding grounds to spawn exclusively in a small oligotrophic area of the tropical eastern Indian Ocean (IO) that is rich in mesoscale structures, driven by complex currents and seasonally reversing monsoonal winds. To survive, SBT larvae must feed and grow rapidly under environmental conditions that challenge conventional understanding of food-web structure and functional relationships in poor open-ocean systems. The preferred prey of SBT larvae, cladocerans and Corycaeidae copepods, are poorly studied and have widely different implications for trophic transfer efficiencies to larvae. Differences in nitrogen sources - N fixation vs deep nitrate of Pacific origin - to sustain new production in the region also has implications for conditions that may select for prey types (notably cladocerans) that enhance transfer efficiency and growth rates of SBT larvae. The relative importance of these N sources for the IO ecosystem may affect SBT resiliency to projected increased ocean stratification. This research expedition investigates how mesoscale variability in new production, food-web structure and trophic fluxes affects feeding and growth conditions for SBT larvae. Sampling across mesoscale features tests hypothesized relationships linking variability in SBT larval feeding and prey preferences (gut contents), growth rates (otolith analyses) and trophic positions (TP) to the environmental conditions of waters selected by adult spawners. Trophic Positions of larvae and their prey are determined using Compound-Specific Isotope Analyses of Amino Acids (CSIA-AA). Lagrangian experiments investigate underlying process rates and relationships through measurements of water-column 14C productivity, N2 fixation, 15NO3- uptake and nitrification; community biomass and composition (flow cytometry, pigments, microscopy, in situ imaging, genetic analyses); and trophic fluxes through micro- and mesozooplankton grazing, remineralization and export. Biogeochemical and food web elements of the study are linked by CSIA-AA (N source, TP), 15N-constrained budgets and modeling. The project elements comprise an end-to-end coupled biogeochemistry-trophic study as has not been done previously for any pelagic ecosystem.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Program Information

Second International Indian Ocean Expedition (IIOE-2)


Coverage: Indian Ocean


Description from the program website:
The Second International Indian Ocean Expedition (IIOE-2) is a major global scientific program which will engage the international scientific community in collaborative oceanographic and atmospheric research from coastal environments to the deep sea over the period 2015-2020, revealing new information on the Indian Ocean (i.e. its currents, its influence upon the climate, its marine ecosystems) which is fundamental for future sustainable development and expansion of the Indian Ocean's blue economy. A large number of scientists from research institutions from around the Indian Ocean and beyond are planning their involvement in IIOE-2 in accordance with the overarching six scientific themes of the program. Already some large collaborative research projects are under development, and it is anticipated that by the time these projects are underway, many more will be in planning or about to commence as the scope and global engagement in IIOE-2 grows.

Focused research on the Indian Ocean has a number of benefits for all nations. The Indian Ocean is complex and drives the region's climate including extreme events (e.g. cyclones, droughts, severe rains, waves and storm surges). It is the source of important socio-economic resources (e.g. fisheries, oil and gas exploration/extraction, eco-tourism, and food and energy security) and is the background and focus of many of the region's human populations around its margins. Research and observations supported through IIOE-2 will result in an improved understanding of the ocean's physical and biological oceanography, and related air-ocean climate interactions (both in the short-term and long-term). The IIOE-2's program will complement and harmonise with other regional programs underway and collectively the outcomes of IIOE-2 will be of huge benefit to individual and regional sustainable development as the information is a critical component of improved decision making in areas such as maritime services and safety, environmental management, climate monitoring and prediction, food and energy security.

IIOE-2 activities will also include a significant focus on building the capacity of all nations around the Indian Ocean to understand and apply observational data or research outputs for their own socio-economic requirements and decisions. IIOE-2 capacity building programs will therefore be focused on the translation of the science and information outputs for societal benefit and training of relevant individuals from surrounding nations in these areas.

A Steering Committee was established to support U.S. participation in IIOE-2. More information is available on their website at https://web.whoi.edu/iioe2/.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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