Zonar data for BioSWOT-Med Zooglider deployment in the Northwestern Mediterranean Sea, March-May 2023

Website: https://www.bco-dmo.org/dataset/983031
Data Type: Cruise Results
Version: 1
Version Date: 2025-08-22

Project
» Zooglider assessment of zooplankton frontal gradients across the BIOSWOT-Med region (BIOSWOT-Med)
ContributorsAffiliationRole
Ohman, Mark D.University of California-San Diego Scripps (UCSD-SIO)Principal Investigator, Contact
Ellen, Jeffrey S.Naval Information Warfare Center Pacific (NIWC Pacific)Scientist
Gastauer, SvenThünen Institute of Sea Fisheries (TI-SF)Scientist
Newman, SawyerWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager
Soenen, KarenWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
These data are based on deployment of the Scripps Zooglider in collaboration with the French-led BIOSWOT-Med study in the Northwestern Mediterranean Sea in Spring 2023.  This study was one of the Adopt-a-Crossover field studies carried out around the world in synchrony with the launch by NASA/CNES of the new SWOT satellite for enhanced ocean altimetry.  We deployed Zooglider on 30 March 2023 from Palma, Majora using a small craft, then navigated it remotely to the BIOSWOT-Med study region.  Initially Zooglider sampled to the east of Majorca and south of Menorca. Then we recovered Zooglider at sea, transported it to the center of an anticyclonic eddy north of Menorca, and redeployed it, navigating it from the eddy center across the eddy periphery.  We then recovered it at sea on 8 May 2023, for a total mission duration of 40 days.  Zooglider data were telemetered back to our server each time the vehicle surfaced and the data were immediately posted on our public website, available to all BIOSWOT-Med participants and any member of the general public.  The data archived here are the data recovered from the Zooglider at the end of the mission.  They include acoustic volume backscatter at 200 kHz and 1000 kHz.  Data were typically acquired in Zooglider dives between approximately 420 m depth and the sea surface, apart from initial and final Zooglider dives that were somewhat shallower. 


Coverage

Location: Northwestern Mediterranean Sea
Spatial Extent: N:40.98465 E:5.40885 S:38.7927 W:2.45025
Temporal Extent: 2023-03-30 - 2023-05-08

Dataset Description

This dataset is part of a larger collaborative study called BIOSWOT-Med in the Northwestern Mediterranean Sea. The Scripps Zooglider was deployed in collaboration with a French-led team aboard the R/V L'Atalante from March to May 2023.

Data from the Zooglider mission include: CTD, Zonar, Particle counts from Zoocam images and Zooglider dive record data (see related datasets).


Methods & Sampling

Data were acquired in 351 Zooglider dive profiles in the Northwestern Mediterranean, usually from approximately 420 m depth to the sea surface.  These dives are numbered 1-314 and 353-389.  The intervening numbers (315-353) refer to time periods when the Zooglider was in transit onboard R/V L’Atalante, during which time no in situ data were acquired.  CTD and Chl-a fluorometer data were recorded on all dives when Zooglider was immersed.   Zonar data were not acquired on odd-numbered dives from 47-241 (inclusive).  Zoocam (shadowgraph imaging) data were acquired on a total of 115 dives (dives 1-8, 245-314, and 353-389).  The Zoocam was powered off during intervening dives in order to conserve memory storage.

Zooglider was moving at approximately 15 cm s-1 horizontally and 10 cm s-1 vertically while sampling, at an average angle of 16-18° off the horizontal.  All sampling was done only on the Zooglider ascents.  During descents, ultraviolet LEDs were powered intermittently and wipers activated to remove any biofouling materials on the optical surfaces.

Zonar sampling was conducted by collecting a four-ping burst ensemble every 4 m on ascent. These data were averaged into 1 m vertical depth bins.  For the present study, volume backscatter was analyzed in range bins from 3-6 m from the transducer, corresponding to an ensonified volume of 1.98 m3 at 200 kHz and 0.33 m3 at 1 MHz.  NaN values indicate no volume backscatter was recorded.

Sampling details may be found in Ohman et al. (2019). The parallel BIOSWOT-Med sampling program aboard the French research vessel L’Atalante, including other autonomous instruments is described in Doglioli and Gérald. (2023) (see related publications). 


Data Processing Description

Volume backscatter (Sv) at two frequencies (1000 and 200 kHz) was calculated using the sonar equation as described in Gastauer et al. (2022).  Sv was averaged in 1 m vertical depth bins as described in Ohman et al. (2019, supplementary material).


BCO-DMO Processing Description

* NA values converted to blanks
* Converted date to ISO format (yyyymmdd -> yyyy-mm-dd)
* Converted time to ISO format (hhmmss -> hh:mm:ss)
* Created an ISO_DateTime_UTC column from the original, separate date and time columns (the original two date and time columns have been removed from the data file
* Added ISO_DateTime_UTC column to dataset


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Related Publications

DOGLIOLI Andrea, & GREGORI Gérald. (2023). BioSWOT-Med cruise,L'Atalante R/V. Sismer. https://doi.org/10.17600/18002392
Methods
Gastauer, S., Nickels, C. F., & Ohman, M. D. (2021). Body size‐ and season‐dependent diel vertical migration of mesozooplankton resolved acoustically in the San Diego Trough. Limnology and Oceanography, 67(2), 300–313. Portico. https://doi.org/10.1002/lno.11993
Methods
Ohman, M. D., Davis, R. E., Sherman, J. T., Grindley, K. R., Whitmore, B. M., Nickels, C. F., & Ellen, J. S. (2018). Zooglider: An autonomous vehicle for optical and acoustic sensing of zooplankton. Limnology and Oceanography: Methods, 17(1), 69–86. Portico. https://doi.org/10.1002/lom3.10301
Methods
Sherman, J., Davis, R. E., Owens, W. B., & Valdes, J. (2001). The autonomous underwater glider “Spray.” IEEE Journal of Oceanic Engineering, 26(4), 437–446. https://doi.org/10.1109/48.972076
Methods

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Related Datasets

IsRelatedTo
Ohman, M. D., Gastauer, S., Ellen, J. S. (2025) CTD Data for BioSWOT-Med Zooglider deployment in the Northwestern Mediterranean Sea, March-May 2023. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2025-08-05 http://lod.bco-dmo.org/id/dataset/971065 [view at BCO-DMO]
Relationship Description: The temperature, salinity, density, and pressure recorded by *Zooglider* during ascent.
Ohman, M. D., Gastauer, S., Ellen, J. S. (2025) Particle counts for BioSWOT-Med Zooglider deployment in the Northwestern Mediterranean Sea, March-May 2023. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2025-08-13 http://lod.bco-dmo.org/id/dataset/982626 [view at BCO-DMO]
Relationship Description: The concentrations of 25 groups of planktonic organisms identified from Zoocam images, together with unidentified small particles between 0.25-0.45 mm Equivalent Circular Diameter (ECD), the total number of non-identified particles > 0.45 mm ECD, and the total number of particles (identified+non-identified) > 0.45 mm ECD. Data were recorded by Zoocam during *Zooglider* ascent.
Ohman, M. D., Gastauer, S., Ellen, J. S. (2025) Zooglider dive record from the BIOSWOT-Med cruise in the Northwestern Mediterranean Sea, March-May 2023. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2025-05-19 http://lod.bco-dmo.org/id/dataset/962204 [view at BCO-DMO]
Relationship Description: Includes the beginning and ending latitudes/longitudes and times of the overall mission, the estimated mid-point latitudes/longitudes of the ascent phase when Zoocam and Zonar data were recorded (i.e., 75% of the distance between the location of the beginning and end of each dive), and the maximum pressure reached for each dive.

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Parameters

ParameterDescriptionUnits
Dive_number

Zooglider dive number

unitless
Pressure

Pressure below the sea surface

decibars
longitude_mid_ascent_75

Longitude of zooglider mid ascent

decimal degrees
latitude_mid_ascent_75

Latitude of zooglider mid ascent

decimal degrees
ISO_DateTime_UTC

Sampling date time (UTC time zone, ISO format)

ISO format)
Sv_1000_dB

Volume backscatter at 1000kHz

dB (re 1 m-1)
Sv_200_dB

Volume backscatter at 200kHz

dB (re 1 m-1)
SvDelta_dB

Difference (Sv_1000kHz - Sv_200kHz)

dB (re 1 m-1)


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Instruments

Dataset-specific Instrument Name
Custom Zonar dual-frequency active acoustic system
Generic Instrument Name
Acoustic Recorder
Dataset-specific Description
Custom Zonar dual-frequency active acoustic system, at 1000 kHz and 200 kHz, as described in Ohman et al. (2019) and calibrated in a seawater pool with a tungsten carbide reference sphere.
Generic Instrument Description
An acoustic recorder senses and records acoustic signals from the environment.

Dataset-specific Instrument Name
SeaBird CP41
Generic Instrument Name
CTD Sea-Bird 41
Dataset-specific Description
SeaBird CP41 pumped CTD, calibrated against an independently calibrated CTD.
Generic Instrument Description
The Sea-Bird SBE 41 CTD module was originally developed in 1997 for integration with sub-surface oceanographic floats. It uses MicroCAT Temperature, Conductivity, and Pressure sensors.

Dataset-specific Instrument Name
Generic Instrument Name
Zooglider
Dataset-specific Description
The Scripps Zooglider was used during a BIOSWOT-Med cruise study in the Northwestern Mediterranean Sea in Spring 2023
Generic Instrument Description
Zooglider, designed and built at the Scripps Institution of Oceanography, as described in Ohman et al. (2019. Limnology and Oceanography-Methods 17: 69-86 doi 10.1002/lom3.10301).  It is based on a Spray glider hull (Sherman et al. 2002. IEEE Journal of Oceanic Engineering 26: 437-446 doi 10.1109/48.972076), modified with custom optical and acoustic sampling instruments.  


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Deployments

BioSWOT-Med

Website
Platform
R/V L'Atalante
Start Date
2023-04-21
End Date
2023-05-15
Description
French-led BIOSWOT-Med study in the Northwestern Mediterranean Sea in Spring 2023. This study was one of the Adopt-a-Crossover field studies carried out around the world in synchrony with the launch by NASA/CNES of the new SWOT satellite for enhanced ocean altimetry. 


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Project Information

Zooglider assessment of zooplankton frontal gradients across the BIOSWOT-Med region (BIOSWOT-Med)

Coverage: NW Mediterranean Sea


NSF Award Abstract:
Ocean fronts are regions of sharp horizontal discontinuities that can alter phytoplankton growth rates and community composition, zooplankton distributions and grazing activity, and predator foraging success. This study is using Zooglider, an autonomous ocean sampler equipped with a range of sensors and capitalizing on a unique opportunity to investigate frontal gradients and plankton communities in the western Mediterranean Sea. It is timed to coincide with a rapid crossover phase of a new NASA satellite mission. The combination of satellite and field-collected data will provide high resolution of the bio-physical consequences of oceanic frontal processes. The project incorporates training for graduate and undergraduate students as well as public outreach. Results are broadly communicated by partnering with a major public aquarium that serves 450,000 visitors per year, including by exhibiting novel porcelain ‘Zooware’ meant to convey the sensory experience of exploring the ocean’s planktonic fauna.

This project focuses on advancing understanding of frontal processes in the western Mediterranean Sea, at a ‘crossover’ site where NASA’s new Surface Water Ocean Topography (SWOT) satellite is making high-frequency sea surface height measurements using a high-resolution sensor. Measurements from the SWOT satellite are resolving small changes in sea-surface height, making it possible to follow the development and temporal progression of ocean frontal systems. The investigator is assessing the consequences of these frontal systems by testing the hypotheses that 1) zooplankton, marine snow particles, and predators are altered in these ocean frontal regions with a size-dependent or trait-dependent response; 2) particle-grazing zooplankton are more closely associated with layers of marine snow than with layers of living phytoplankton; 3) vertical thin layers of zooplankton are more likely to form in frontal than non-frontal regions; and 4) higher predators such as zooplanktivorous fish and marine mammals are more detectable in frontal regions The project makes use of an autonomous ocean instrument, the Zooglider. It includes a shadowgraph imaging Zoocam for resolving zooplankton and marine snow; a dual frequency Zonar to resolve mesozooplankton and larger sources of acoustic backscatter; and a sensitive hydrophone for recording ambient sounds, especially from marine mammals and fishes. These autonomous measurements are coordinated with complementary measurements from a ship-based sampling program, other autonomous vehicles, and satellite remote sensing.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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