| Contributors | Affiliation | Role |
|---|---|---|
| Palevsky, Hilary I. | Boston College (BC) | Principal Investigator, Contact |
| Fogaren, Kristen E. | Boston College (BC) | Scientist |
| Nicholson, David P. | Woods Hole Oceanographic Institution (WHOI) | Scientist |
| Wanzer, Lucy | Wellesley College | Student |
| Soenen, Karen | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Primary award supporting the dataset is OCE-2338450 (CAREER: Constraining the high-latitude ocean carbon cycle: Leveraging the Ocean Observatories Initiative (OOI) Global Arrays as marine biogeochemical time series), other awards supporting the data are: OCE-1946072, and OCE-1755574 (Collaborative Research: The Annual Cycle of the Biological Carbon Pump in the Subpolar North Atlantic).
The dataset serves the .csv, matlab and netcdf format of the blended oxygen product for increased reuse purporses.
The data presented here were collected by the OOI Global Irminger Sea Array Apex Surface Mooring (SUMO), Apex Wire Following Profiler Mooring (WFP), and Mobile Assets (gliders). Unprocessed data are available at the OOI THREDDS Data Server and OOI Raw Data Archive. Links and DOIs of the instruments and servers can be found under the related datasets section below.
The SUMO 1-m oxygen sensor makes measurements continuously at 0.5 Hz while the 12-m oxygen sensor makes burst measurements at 0.5 Hz for 3 minutes every 15 minutes. The WFP (~170-2600 m) collects a profile every 20 hours with a vertical sampling resolution of 2.3 ± 0.15 dbar. While operational, gliders (0-200 m or 0-1000 m) collected profiles approximately 3 times a day with typical vertical sampling resolutions ranging from 0.2 to 7 dbar across deployments.
We synthesized DO data from the Aanderaa oxygen optodes deployed on the wire-following profiler (WFP), gliders, and surface mooring (SUMO) fixed-depth oxygen sensors to create an intercalibrated, depth-resolved oxygen time series over the full water column throughout the period from January 2015-January 2022. The data QA/QC and calibration approaches applied here build upon community-developed best practices for processing OOI oxygen data (Palevsky, Clayton, et al., 2023) and recommendations for calibration of moored oxygen optodes (Miller et al., 2024), while also incorporating additional steps that our team found were necessary to produce the highest-quality possible final dataset.
We summarize here the methods followed to calibrate each of the individual oxygen assets included in the synthesis data product, with further details provided in the Supplementary Information of Fogaren et al. 2026. We used shipboard DO measurements to produce calibrated oxygen depth profiles for each of the turn-around cruises from 2014 to 2022 (Fogaren & Palevsky, 2023). Data from these profiles were used to determine DO concentrations on a stable deep isotherm (3.1θ, 1926 ± 71 dbar) that was not impacted by wintertime ventilation. WFP oxygen data, which measure this deep isotherm on every profile, were calibrated to the measurements on this deep isotherm (building on the approach of Takeshita et al., 2013 and Palevsky & Nicholson, 2018). This calibration was passed on to oxygen data collected by gliders transiting the array based on matchups between temporally and spatially aligned glider and WFP profiles when the glider was within the vicinity of the WFP (<4 km). For the second half of the analysis period, beginning in July 2018, we also include surface mixed-layer dissolved oxygen data collected from optodes deployed at 1 m and 12 m on the Apex surface mooring in the oxygen sensor calibration process. These mixed-layer DO data were separately calibrated based on turn-around cruise measurements at the beginning and end of each sensor deployment and showed good agreement with surface mixed-layer oxygen measurements from the gliders calibrated using the deep isotherm-based method (residual mean ± standard deviation = 1.6 ± 4.6 μmol kg-1).
We calculated a daily oxygen concentration along each isobar after removing density and oxygen outliers. To calculate density outliers, density data is detrended along each isobar while below the mixed layer and outliers are determined as data more than 1.5 interquartile ranges above the upper quartile or below the low quartile of the detrended data. After removing density outliers, oxygen data from all glider and WFP deployments are combined and oxygen outliers are determined using the same method used for density outlier detection. A daily mean oxygen value is then computed for each isobar. For full details see Methods and Text S1 and Figure S1-S5 in Fogaren et al. (2026).
* Moved links and references from methods text to related publications section
* Added description on awards related to dataset
* Converted the Time column from the format DD-MMM-YYYY HH:MM:SS to the ISO 8601 format YYYY-MM-DDTHH:MM:SS
| File |
|---|
998868_v1_do.csv (Comma Separated Values (.csv), 245.46 MB) MD5:ce33fee71643db8ad0fdff6dd5b5e7d9 Primary data file for dataset ID 998868, version 1 |
| File |
|---|
blended oxygen product (mat file) filename: BCO_DMO_dailyDO.mat (MATLAB Data (.mat), 33.43 MB) MD5:92433381b33ce70812f21b84bfb2d9d0 Blended oxygen product in MATLAB format. File of MATLAB date/time (UTC), pressure (dbar) and daily mean of the calibrated dissolved oxygen concentrations (µmol/kg) from all assets. - dn: Matlab date number (UTC) [2858×1 double]- dt: date time (UTC) [2858×1 datetime]- prs: pressure (dbar) [2600×1 double]- DO_umolkg: calibrated dissolved oxygen concentrations (µmol/kg) [2600×2858 double] |
blended oxygen product (netCDF) filename: daily_DO.nc (NetCDF, 56.74 MB) MD5:cdf0dd3be6797af081e10117bceaec92 Blended Oxygen Product in NetCDF formatGlobal Attributes: creation_date = '18-May-2026 14:38:59' author = 'Kristen Fogaren fogaren@bc.edu' latitude = 59.972 longitude = -39.506Dimensions: pressure = 2600 time = 2858Variables: dissolved_oxygen Size: 2600x2858 Dimensions: pressure,time Datatype: double Attributes: units = 'umol/kg' pressure Size: 2600x1 Dimensions: pressure Datatype: double Attributes: units = 'dbar' time Size: 2858x1 Dimensions: time Datatype: double Attributes: units = 'UTC' |
gliders filename: glider.csv (Comma Separated Values (.csv), 307.50 MB) MD5:1b00facba04ce646634d578232a4d277 Gliders. Table of date/time (UTC), pressure (dbar), temperature (deg C), practical salinity (-) and calibrated dissolved oxygen concentration (μmol/kg) indexed by glider number and profile number with OOI deployment number, latitude and longitude. Column Name Description Units Missing Data IdentifierTime date and time (UTC) none NaNglider_number serial number of glider none NaNprofile_number profile number none NaNlongitude longitude degrees NaNlatitude latitude degrees NaNdeploy_yr OOI deployment number none NaNprs_dbar pressure decibar NaNtemp_degC temperature °C NaNpracsal practical salinity none NaNDO_umolkg calibrated dissolved oxygen μmol/kg NaN |
surface mooring at 1 m filename: sumo1.csv (Comma Separated Values (.csv), 288.43 KB) MD5:547d13a4651f0df9e15b61aa835dd01b Surface mooring at 1 m. Table of date/time (UTC), pressure (dbar), temperature (deg C), practical salinity (-) and calibrated dissolved oxygen concentration (μmol/kg) with OOI deployment number, latitude and longitude. Column Name Description Units Missing Data IdentifierDOdt date and time (UTC) none NaNdeployment OOI deployment number none NaNlat latitude degrees NaNlon longitude degrees NaNprs pressure decibar NaNtemp_degC temperature °C NaNpracsal practical salinity none NaNDO_umolkg calibrated dissolved oxygen μmol/kg NaN |
surface mooring at 7 m filename: sumo7.csv (Comma Separated Values (.csv), 8.03 MB) MD5:1ab22c44e6d28565c0514926af920f72 Surface mooring at 7 m . Table of date/time (UTC), pressure (dbar), temperature (deg C), practical salinity (-) and calibrated dissolved oxygen concentration (μmol/kg) with OOI deployment number, latitude and longitude. Column Name Description Units Missing Data IdentifierDOdt date and time (UTC) none NaNdeployment OOI deployment number none NaNlat latitude degrees NaNlon longitude degrees NaNprs pressure decibar NaNtemp_degC temperature °C NaNpracsal practical salinity none NaNDO_umolkg calibrated dissolved oxygen μmol/kg NaN |
wire-following profiler filename: wfp.csv (Comma Separated Values (.csv), 426.28 MB) MD5:61afcd986343a99658e618b2459db332 Wire-following profiler. Table of date/time (UTC), pressure (dbar), temperature (deg C), practical salinity (-) and calibrated dissolved oxygen concentration (μmol/kg) indexed by profile number with OOI deployment number, latitude and longitude. Column Name Description Units Missing Data IdentifierTime date and time (UTC) none NaNprofile_number profile number none NaNlongitude longitude degrees NaNlatitude latitude degrees NaNdeploy_yr OOI deployment number none NaNprs_dbar pressure decibar NaNtemp_degC temperature °C NaNpracsal practical salinity none NaNDO_umolkg calibrated dissolved oxygen μmol/kg NaN |
| Parameter | Description | Units |
| ISO_DateTime_UTC | date and time (UTC) | unitless |
| profile_number | profile number | unitless |
| longitude | longitude | decimal degrees |
| latitude | latitude | decimal degrees |
| prs_dbar | pressure | decibar (db) |
| DO_umolkg | calibrated dissolved oxygen | μmol/kg |
| Dataset-specific Instrument Name | Sea-Bird Scientific, Bellevue, WA |
| Generic Instrument Name | CTD Sea-Bird |
| Dataset-specific Description | conductivity, temperature, depth (CTD) instruments |
| Generic Instrument Description | A Conductivity, Temperature, Depth (CTD) sensor package from SeaBird Electronics. This instrument designation is used when specific make and model are not known or when a more specific term is not available in the BCO-DMO vocabulary. Refer to the dataset-specific metadata for more information about the specific CTD used. More information from: http://www.seabird.com/ |
| Dataset-specific Instrument Name | oxygen optodes (Aanderaa, Norway) |
| Generic Instrument Name | Oxygen Sensor |
| Generic Instrument Description | An electronic device that measures the proportion of oxygen (O2) in the gas or liquid being analyzed |
| Website | |
| Platform | R/V Neil Armstrong |
| Start Date | 2017-07-28 |
| End Date | 2017-08-30 |
| Website | |
| Platform | R/V Neil Armstrong |
| Start Date | 2018-06-05 |
| End Date | 2018-06-24 |
| Website | |
| Platform | R/V Neil Armstrong |
| Start Date | 2019-08-02 |
| End Date | 2019-08-24 |
| Website | |
| Platform | R/V Neil Armstrong |
| Start Date | 2020-08-07 |
| End Date | 2020-09-07 |
| Website | |
| Platform | R/V Neil Armstrong |
| Start Date | 2021-08-03 |
| End Date | 2021-08-26 |
| Website | |
| Platform | R/V Neil Armstrong |
| Start Date | 2016-06-30 |
| End Date | 2016-07-28 |
| Website | |
| Platform | R/V Atlantis |
| Start Date | 2015-08-05 |
| End Date | 2015-09-01 |
| Website | |
| Platform | R/V Knorr |
| Start Date | 2014-09-07 |
| End Date | 2014-09-28 |
NSF Award Abstract:
The ocean absorbs a large fraction of the atmospheric carbon dioxide generated by the burning of fossil fuels. Much of this uptake occurs in high latitude (polar) regions of the ocean. However, current monitoring capabilities in the polar ocean are limited. The Ocean Observatories Initiative (OOI) aims to address this need by providing 25 years of continuous physical and biogeochemical sensor data from autonomous platforms in the high latitude ocean. This CAREER project will improve understanding of the marine carbon cycle in the high latitude ocean using OOI data. The science team will use biogeochemical data collected by the OOI sensors to monitor long term changes in carbon cycling processes. In addition, this CAREER project includes educational activities to broaden participation in oceanographic research. The lead scientist will develop a new research seminar course to provide training and research opportunities for undergraduate students. A series of educational videos will be created to showcase the use and application of OOI data. The videos will be used in college level courses at three universities. This project will provide training opportunities for eight undergraduate students, two doctoral students, and one postdoctoral researcher.
This CAREER project will utilize marine biogeochemical time series data from Ocean Observatories Initiative (OOI) locations in the subpolar North Atlantic and subarctic Northeast Pacific to evaluate the relative roles of biological, chemical, and physical processes driving the ocean’s carbon sink. The project seeks to improve the usability of OOI biogeochemical (BGC) sensor data and leverage these marine BGC time series data to determine changes in carbon cycling processes in the subpolar North Atlantic and subarctic Northeast Pacific Oceans. This research is key for predicting long term perturbations due to climate change and for understanding how changes in carbon cycling in these regions will influence carbon sequestration. The objectives of this project are to: 1) quantify the rates and drivers of carbon cycling and long-term carbon sequestration in the subpolar North Atlantic and subarctic Northeast Pacific Oceans and 2) determine the mechanistic controls on the ocean carbon sink due to inter-related biological, chemical, and physical processes over >10 years at each array site. The high temporal resolution BGC data collected by the arrays will improve understanding of the sampling resolution needed to capture key carbon cycling processes and test the hypothesis that short-time scale events during spring phytoplankton blooms and strong winter storms play a significant role in the overall annual carbon cycle. Education activities associated with this CAREER project include a series of educational videos about OOI and use of the data it provides that will be incorporated into undergraduate courses, a new research seminar course for undergraduates, and research opportunities for undergraduate and graduate students as well as a postdoctoral researcher.
This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
| Funding Source | Award |
|---|---|
| NSF Division of Ocean Sciences (NSF OCE) |