Parameter: spectral counts

Short Description:

spectral counts

Short Name:

spectral_counts

Official Name:

spectral_counts

Units:

unitless

Units External Identifier:

Graphable:

Yes

No Data Value:

Maximum Value:

Minimum Value:

Description

"Spectral count, defined as the total number of spectra identified for a protein, has gained acceptance as a practical, label-free, semiquantitative measure of protein abundance in proteomic studies." (https://www.ncbi.nlm.nih.gov/pubmed/20121475)"

Datasets associated with this parameter

Dataset Name	Brief Description	Project	PI-Supplied Parameter Name
Alteromonas macleodii MIT1002 replete proteome	Alteromonas macleodii MIT1002 replete proteome	C-CoMP Model Bacteria	MIT1002_CS_b1_SC, MIT1002_CS_c1_SC, MIT1002_CS_a1_SC
Peptide spectral counts (MetZyme 0.2)	Peptides and their spectral counts and precursor intensities from KM1128	MetZyme, HiCO2_AdaptCyano	number_of_identified_pos2H_spectra, number_of_identified_pos3H_spectra, number_of_identified_pos4H_spectra, sum_spectral_counts
ProteOMZ Exclusive Peptide Level Spectral Counts		ProteOMZ (Proteomics in an Oxygen Minimum Zone), MM Saito	Number_of_identified_plus2H_spectra, Number_of_identified_plus3H_spectra, Number_of_identified_plus4H_spectra, Exclusive_Sum_PSM
ProteOMZ Peptide Level Spectral Counts	Total spectral counts of peptides from the R/V Falkor cruise 160115 in the Central Pacific for the ProteOMZ expedition in 2016.	ProteOMZ (Proteomics in an Oxygen Minimum Zone)	Number_of_identified_3H_spectra, Number_of_identified_4H_spectra, SUM_Spectral_Counts, Number_of_identified_2H_spectra
ProteOMZ Protein Level Spectral Counts	Total spectral count of proteins from R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific in 2016.	ProteOMZ (Proteomics in an Oxygen Minimum Zone)	spectral_count
Ross Sea metaproteome peptide spectral counts		CORSACS	spectral_count_sum
Ross Sea metaproteome protein spectral counts		CORSACS	spectral_count
Ruergeria pomeroyi DSS-3 replete proteome	Ruergeria pomeroyi DSS-3 replete proteome	C-CoMP Model Bacteria	DSS3_a1_SC, DSS3_b1_SC, DSS3_c1_SC
Total spectral count of proteins (MetZyme 0.2)	Global metaproteomic dataset for KM1128 the METZYME expedition.	MetZyme	spectral_count
Trichodesmium field metaproteomes - peptide spectral counts		MM Proteins and Organics Tech, Cyanobacteria Warming Responses, TriCoLim, MM Saito	plus_3H_spectra_count, plus_4H_spectra_count, plus_2H_spectra_count, spectral_count_sum
Trichodesmium proteomes and Hi CO2 adaptation	Trichodesmium nutrient-limited proteomes in 380 and 750 uatm CO2	HiCO2_AdaptCyano	pCO2_380_3, pCO2_380plusFelim_2, pCO2_750_1, pCO2_380plusFelim_3, pCO2_750_2, pCO2_750plusFelim_1, pCO2_750_3, pCO2_750plusFelim_2, pCO2_380plusPlim_1, pCO2_750plusFelim_3, pCO2_380plusPlim_2, pCO2_380plusFePlim_1, pCO2_380plusPlim_3, pCO2_380plusFePlim_2, pCO2_750plusPlim_1, pCO2_380plusFePlim_3, pCO2_750plusPlim_2, pCO2_750plusFePlim_1, pCO2_380_1, pCO2_750plusPlim_3, pCO2_750plusFePlim_2, pCO2_380_2, pCO2_380plusFelim_1, pCO2_750plusFePlim_3

Programs associated with this parameter

None

Database

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Parameter: spectral counts