Coral reefs are highly productive and dynamic ecosystems that grow in some of the most resource-poor and dilute waters on the planet. The acquisition of nutrients and the retention and recycling of those nutrients within the system is crucial to their survival, and many of these processes are governed by microbial interactions. The overall goal of this project was to understand the role of microbial communities and the dissolved organic matter they use as their primary food resources in coral reef ecosystems.
Intellectual Merit:
The first goal of this project was to understand day and night cycling of the chemistry and microbiology of the reefs. To this end we developed new methods of collecting water samples every few hours in various reef environments by working with several labs to design and deploy autosamplers. Across 3 major field campaigns in Moorea, Curacao, and the Southern Line Islands we collected and processed more than 300 seawater samples and analyzed them for chemical and microbial composition. Ongoing work seeks to understand the rhythms of these processes in the reef using these data and develop models of how microbes interact with water chemistry to acquire and recycle reef nutrients.
The second major goal was to better understand the dynamics of microbes and DOM in key coral reef processes, including natural variation in the water and in organisms, but also how these dynamics respond to emerging threats such as nutrient pollution, thermal stress-induced bleaching, and phase shifts from coral to algal dominance. Building from ongoing collaborations in Moorea, Hawaii and Curacao we published >10 peer-reviewed articles exploring diverse ways that microbes and DOM play key roles in reef ecology and biogeochemistry, including a major review of the topic in Annual Reviews in Marine Science. Two high profile journal articles defined the chemical composition of tissue metabolites and exometabolites of coral reef primary producers in Hawaii and Moorea, respectively. Two more articles explored how bleaching impacts the tissue-associated and water column microbiology of corals during bleaching events in Hawaii and Moorea, respectively. Two articles focused on larval thermal stress, examining how prior heating and the addition of different zooxanthellae symbionts influence their ability to withstand warmer oceans. Two articles developed models of pathogen loading and hypoxia to coral reef waters, both significant threats to the microbial ecology of reefs. And two manuscripts focused on the impacts of nutrients on the microbiology and biogeochemistry of reefs, using both experimental and natural submarine groundwater inputs as test cases.
Broader Impacts:
This project has made significant contributions to the conservation management of coral reef habitats. This research contextualized how crucial nutrient recycling processes vary across gradients of coral cover and nutrient availability, making the results useful to managers seeking to enhance ecosystem-based approaches to reef restoration. Ongoing macrolgal phase shifts in the MCR-LTER are hypothesized to be related to nutrient pollution, and this project supported major survey and workshop efforts to understand nutrient cycling in the reefs of Mo'orea.
The project also made significant advances in training and education of microbial oceanography and coral reef science. This grant supported the independent research of several American students and early career scientists. Finally, this project engaged extensively in outreach and communication with the American people. Media communication has included articles in popular magazines such as Discover, interviews by NPR, local news engagements, podcasts, and extension engagements with UH Sea Grant.
Last Modified: 12/30/2025
Modified by: Linda E Wegley Kelly
| Dataset | Latest Version Date | Current State |
|---|---|---|
| Biogeochemical and microbial parameters collected during diel surveys on a coral reef at Mo'orea's North Shore in French Polynesia in 2021, 2022, and 2023 | 2026-07-30 | Data not available |
Principal Investigator: Linda E. Wegley Kelly (University of California-San Diego Scripps Inst of Oceanography)