Dataset: Trichodesmium AHL metatranscriptomes_AE1409
Deployment: AE1409

GenBank Trichodesmium accessions and associated metadata
View Data: Data not available yet
Principal Investigator: 
Sonya T. Dyhrman (Lamont-Doherty Earth Observatory, LDEO)
Co-Principal Investigator: 
Benjamin A.S. Van Mooy (Woods Hole Oceanographic Institution, WHOI)
Student: 
Kyle R. Frischkorn (Lamont-Doherty Earth Observatory, LDEO)
BCO-DMO Data Manager: 
Nancy Copley (Woods Hole Oceanographic Institution, WHOI BCO-DMO)
Version: 
Deployment Synonyms:
 PABST
Description

The samples are composed of raw metatranscriptomic reads from acyl homoserine lactone (AHL) (quorum sensing) addition incubation experiments performed on Trichodesmium colonies collected in May 2014 on the 'PABST' cruise (R/V Atlantic Explorer AE1409) in the Sargasso Sea. We extracted prokaryotic RNA from triplicate control and +AHL samples, pooling together triplicate samples and sequencing 60 million paired end reads.

Links to the NCBI GenBank BioProjects are provided.

Raw reads can also be found on the NCBI SRA under accession code PRJNA450995.

More information about this dataset deployment