Dataset: Sequence read accession (SRA) numbers for bacterial and archaeal 16S rRNA gene amplicons from the DeepCCZ and Abyssline programs

This dataset has not been validatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.861683.1Version 1 (2023-10-25)Dataset Type:Cruise Results

Principal Investigator: Matthew J. Church (University of Montana)

Co-Principal Investigator: Jeffrey C. Drazen (University of Hawaiʻi at Mānoa)

Co-Principal Investigator: Craig R. Smith (University of Hawaiʻi at Mānoa)

Scientist: Emma Wear (University of Montana)

Contact: Emma Wear ()

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: DeepCCZ (DeepCCZ)

Abstract

This dataset includes sequence read accession (SRA) numbers for bacterial and archaeal 16S rRNA gene amplicons from the DeepCCZ and Abyssline programs.

Cite Dataset
Spatial Extent: N:19.47 E:-116.46 S:4.89 W:-153.75
Temporal Extent: 2013-10-08 - 2018-06-13

This sample set includes 16S rRNA gene amplicon sequences from both samples newly collected on the DeepCCZ cruise in the western Clarion-Clipperton Zone and re-sequenced, archival samples from the Abyssline01 and Abyssline02 cruises in the northeastern Clarion-Clipperton Zone.

Related Datasets

IsRelatedTo
Dataset: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA660809
University of Montana. DeepCCZ bacterial and archaeal 16S rRNA gene community surveys from Clarion-Clipperton Zone APEIs. 2020/09. In: BioProject [Internet]. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information; 2011-. Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA660809. NCBI:BioProject: PRJNA660809.

Related Publications

Methods
Lindh, M. V., Maillot, B. M., Shulse, C. N., Gooday, A. J., Amon, D. J., Smith, C. R., & Church, M. J. (2017). From the Surface to the Deep-Sea: Bacterial Distributions across Polymetallic Nodule Fields in the Clarion-Clipperton Zone of the Pacific Ocean. Frontiers in Microbiology, 8. doi:10.3389/fmicb.2017.01696
Methods
Shulse, C. N., Maillot, B., Smith, C. R., & Church, M. J. (2016). Polymetallic nodules, sediments, and deep waters in the equatorial North Pacific exhibit highly diverse and distinct bacterial, archaeal, and microeukaryotic communities. MicrobiologyOpen, 6(2), e00428. doi:10.1002/mbo3.428
Methods
Wear, E. K., Church, M. J., Orcutt, B. N., Shulse, C. N., Lindh, M. V., & Smith, C. R. (2021). Bacterial and Archaeal Communities in Polymetallic Nodules, Sediments, and Bottom Waters of the Abyssal Clarion-Clipperton Zone: Emerging Patterns and Future Monitoring Considerations. Frontiers in Marine Science, 8. doi:10.3389/fmars.2021.634803

Church, M. J., Drazen, J. C., Smith, C. R., Wear, E. (2024) Sequence read accession (SRA) numbers for bacterial and archaeal 16S rRNA gene amplicons from the DeepCCZ and Abyssline programs. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-10-25 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.861683.1 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation