Dataset: Antarctic salp genome and RNAseq transcriptome from ARSV Laurence M. Gould, Umitaka-Maru, R/V Polarstern LMG1110, UM-08-09, ANT-XXVII-2 in the Southern Ocean from 2009-2011 (Salp_Antarctic project)

ValidatedFinal no updates expectedDOI: 10.1575/1912/bco-dmo.728225Version (2017-01-27)Dataset Type:Cruise Results

Principal Investigator: Ann Bucklin (University of Connecticut)

Co-Principal Investigator: Rachel J. O'Neill (University of Connecticut)

Co-Principal Investigator: Diana Payne (Connecticut Sea Grant)

BCO-DMO Data Manager: Nancy Copley (Woods Hole Oceanographic Institution)

Project: Population ecology of Salpa thompsoni based on molecular indicators (Salp_Antarctic)

Cite Dataset
Spatial Extent: N:-60.90 E:42.00 S:-66.18 W:-74.57
Temporal Extent: 2009-01-12 - 2011-12-02

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This dataset reports Salpa thompsoni specimens used for genomics/transcriptomics with their GenBank accession links.

Related Dataset: Salp sample log: www.bco-dmo.org/dataset/672600

Related Datasets

References
Dataset: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA279245
University of Connecticut (2015). Salpa thompsoni Transcriptome or Gene expression. 2015/03. In: BioProject [Internet]. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information; 2011-. Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA279245. NCBI:BioProject: PRJNA279245.
References
Dataset: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA318929
University of Connecticut. (2016). Salpa thompsoni, First reference genome for the Southern Ocean salp, Salpa thompsoni (Urochordata, Thaliacea). 2016/09. In: BioProject [Internet]. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information; 2011-. Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA318929. NCBI:BioProject: PRJNA318929.

Related Publications

Methods
Batta-Lona, P.G., A. Maas, R. O'Neill, P.H. Wiebe, and A. Bucklin (2016). Transcriptomic profiles of spring and summer populations of the Southern Ocean salp, Salpa thompsoni, in the Western Antarctic Peninsula region. Polar Biology, 40(6), 1261–1276. doi:10.1007/s00300-016-2051-6
Methods
Jue, N. K., Batta-Lona, P. G., Trusiak, S., Obergfell, C., Bucklin, A., O’Neill, M. J., & O’Neill, R. J. (2016). Rapid Evolutionary Rates and Unique Genomic Signatures Discovered in the First Reference Genome for the Southern Ocean Salp,Salpa thompsoni(Urochordata, Thaliacea). Genome Biology and Evolution, 8(10), 3171–3186. doi:10.1093/gbe/evw215

Bucklin, A., O'Neill, R., Payne, D. (2017). Antarctic salp genome and RNAseq transcriptome from ARSV Laurence M. Gould, Umitaka-Maru, R/V Polarstern LMG1110, UM-08-09, ANT-XXVII-2 in the Southern Ocean from 2009-2011 (Salp_Antarctic project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version ) Version Date 2017-01-27 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.728225 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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