Dataset: Temperature, Salinity, and Chlorophyll - Temporal Series

Name: Temperature, salinity, and chlorophyll data used for analysis of urchin gut microbiota, Echinometra sp. EZ (Temporal Data Series)
Published: 2021-08-12
Keywords: Echinometra, Gut Microbiota, Persian/Arabian Gulf, Sea Urchin, microbial ecology, oceans

Cite This Dataset

DOI:10.26008/1912/bco-dmo.858366.1

Spatial Extent: N:24.599 E:54.4215 S:24.599 W:54.4215

Temporal Extent: 2017-03-12 - 2018-02-11

Project:

Dispersal, connectivity and local adaptation along an extreme environmental gradient (Env Gradient Adaptation)

Principal Investigator:

Adam Reitzel (University of North Carolina at Charlotte, UNCC)

Co-Principal Investigator:

John A. Burt (New York University Abu Dhabi, NYUAD)

Scientist:

Edward G. Smith (University of North Carolina at Charlotte, UNCC)

Grace O. Vaughan (New York University Abu Dhabi, NYUAD)

Student:

Noura Al-Mansoori (New York University Abu Dhabi, NYUAD)

Remi Ketchum (University of North Carolina at Charlotte, UNCC)

Technician:

Dain McParland (New York University Abu Dhabi, NYUAD)

BCO-DMO Data Manager:

Shannon Rauch (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2021-08-12

Restricted:

Validated:

Yes

Current State:

Final no updates expected

Temperature, salinity, and chlorophyll data used for analysis of urchin gut microbiota, Echinometra sp. EZ (Temporal Data Series)

Abstract:

Temperature, chlorophyll, and salinity data used for the analysis of urchin gut microbiota, Echinometra sp. EZ. Sea surface temperature data were obtained from NOAA. In addition, a temperature logger (Onset Hobo Tidbit V2) was deployed on the reef substrate at Saadiyat reef which recorded at 60-minute intervals for the temporal series. Chlorophyll concentrations were obtained from NASA MODIS AQUA. Salinity data were obtained from a numeric ocean model: the 1/12 Global Hybrid Coordinate Ocean Model.

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Archival Copy

Version Date	Archive	Persistent Identifier	Date Assigned
2021-08-12	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.26008/1912/bco-dmo.858366.1	2021-08-30

Methods & Sampling

The temporal series involved sampling from one site in the Arabian Peninsula, Saadiyat. We used NOAA's Environmental Research Division Data Access Program (ERDDAP) website to collect sea surface temperature data. The temperature data was downloaded using a bounding box that covered the study area on the day of collection at 12:00:00 UTC (temperature was averaged over one day).

In addition, a temperature logger (Onset Hobo Tidbit V2) was deployed on the reef substrate at Saadiyat reef which recorded at 60-minute intervals for the temporal series (Figure S1 of Ketchum et al., 2021). Chlorophyll concentrations were obtained from MODIS AQUA (https://oceancolor.gsfc.nasa.gov) level 3 monthly averaged data, and salinity data were obtained from a numeric ocean model: the 1/12 Global Hybrid Coordinate Ocean Model (HYCOM; https://www.hycom.org/data/glbu0pt08/expt-91pt2) at 12:00:00 UTC on the day of collections.

Data Processing Description

BCO-DMO Processing:
- changed date format to YYYY-MM-DD;
- replaced 'NA' with 'nd' (no data).

Data Files

File
temporal_series.csv (Comma Separated Values (.csv), 12.53 KB) MD5:0582b620be57e0fca4e95fa74c1ba962 Primary data file for dataset ID 858366

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-1924498

Deployments

None available yet

Instruments

Onset HOBO TidbiT v2 (UTBI-001) temperature logger

Supplied Name: Onset Hobo Tidbit V2

Supplied Description:

Instrument Type

Generic Name: Onset HOBO TidbiT v2 (UTBI-001) temperature logger

Acronym: HOBO TidBit v2

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/134/

Generic Description:

A temperature logger that measures temperatures over a wide temperature range. It is designed for outdoor and underwater environments and is waterproof to 300 m. A solar radiation shield is required to obtain accurate air temperature measurements in sunlight (RS1 or M-RSA Solar Radiation Shield). With an operational temperature range between -20 degrees Celsius and +70 degrees Celsius, the TidbiT v2 has an accuracy of +/-0.21 and a resolution of 0.02 degrees Celsius.

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
Sample	Sample ID. Format is either "month.sample#" or "month.sa.sample#."	unitless	sample
season	Season is determined by temperature at time of collection and subsequently split into three groups: summer, winter, or overlap.	unitless	season
site	Collection site ID. SA represents Saadiyat Reef.	unitless	site
gulf	The Gulf that samples were collected from. PAG is Persian/Arabian Gulf.	unitless	site
dataset	This study generated two datasets; the temporal series and the summer-winter spatial series.	unitless	datatype
month	Month of collection	unitless	month
year	Year of collection	unitless	year
Hycom_Salinity	Salinity data was obtained from a numeric ocean model: the 1/12 Global Hybrid Coordinate Ocean Model (HYCOM; https://www.hycom.org/data/glbu0pt08/expt-91pt2) at 12:00:00 UTC on the day of collections.	PPT	sal
Temp_CRW	NOAA’s Environmental Research Division Data Access Program (ERDDAP) website was used to collect sea surface temperature data. The temperature data was downloaded using a bounding box that covered the study area on the day of collection at 12:00:00 UTC (temperature was averaged over one day).	Degrees Celsius	temp
Temp_Logger	Temperature logger (Onset Hobo Tidbit V2) was deployed on the reef substrate at Saadiyat reef which recorded at 60-minute intervals	Degrees Celsius	temp
Mon_Ocean_Color_NASA_Chl	Chlorophyll concentrations were obtained from MODIS AQUA (https://oceancolor.gsfc.nasa.gov) level 3 monthly averaged data.	milligrams per cubic meter (mg m-3)	chl_a
Date_Collected	Day of collection in YYYY-MM-DD format (UTC) Format: %Y-%m-%d	unitless	date
Latitude	Latitude of collection site	decimal degrees	lat
Longitude	Longitude of collection site	decimal degrees	lon

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Dataset: Temperature, Salinity, and Chlorophyll - Temporal Series