We measured carbon and nitrogen compound-specific stable isotopes of amino acids (CSI-AA) in the shells the three most abundant species of planktic foraminifera from Santa Barbara Basin sediment traps from 2018 to 2021: Globigerina bulloides (d’Orbigny, 1826), Neogloboquadrina incompta (Cifelli, 1961), and Turborotalita quinqueloba (Natland, 1938). Multiple sediment trap collections were combined to constitute representative samples. The N. incompta sample included individuals from sediment trap...
Show moreViews
Downloads
These numbers come from web analytics and reflect real user activity on the site. They reliably show dataset usage and are mostly free of bot traffic.
Samples were collected using a McLane Parflux 78H sediment trap deployed at depths >400 meters (m) in the central Santa Barbara Basin (34.2450389, -120.0592917). The sampling interval was 10 to 14 days, and samples were preserved in borate-buffered formalin solution. A 1/16th split of the sediment trap sample was used. Samples were rinsed with tap water over a 125-micron sieve, and foraminifera tests were removed from other trap material using a fine paintbrush. Foraminifera tests were dried on a micropaleontology slide, then species were identified by test morphology and sorted. Tests of the three most abundant species were removed to separate micropaleontology slides. These tests were inspected under a dissecting microscope to ensure no organic particles were adhered to the exterior or interior of tests. Any organic particles were gently removed with a wet brush. The removed tests were counted and weighed on a microbalance. Tests from multiple sediment trap samples were combined to achieve a sample of 5-10 milligrams (mg). This combined sample was gently rinsed with methanol three times, then dried.
Compound-specific stable isotopes were measured at the UC Santa Cruz Stable Isotope Lab. Tests were demineralized by adding ~1 milliliter (mL) 1N HCl to dissolve carbonate, then stored at 4 degrees Celsius (°C) overnight to complete the demineralization reaction. The HCl was then evaporated under N2. The remaining organic matter was then hydrolyzed with ~ 1mL 6N HCl at 110°C for 20 hours after the vial was purged with N2 to remove oxygen. Samples were purified by cation-exchange chromatography with DOWEX 50WX8-400 resin. Amino acids were measured as trifluoroacetyl isopropyl ester derivatives following Silfer et al. (1991). After drying under N2, samples were esterified with a 1:5 mixture of acetyl chloride:isopropanol at 110 °C for 60 minutes. Samples were dried again under N2, then trifluoroacetylation was completed using a 1:3 mixture of trifluoroacetic anhydride (TFAA) and dichloromethane (DCM) at 110 °C for 15 minutes. Inorganic salts were removed from samples by liquid-liquid extraction of derivatized amino acids in chloroform and an aqueous phosphate buffer. Trifluoroacetylation was completed again after liquid-liquid extraction. Samples were dried and dissolved in ethyl acetate for gas chromatography-isotope ratio mass spectrometry (GC-IRMS).
Amino acid stable isotopes were measured on a Thermo Trace gas chromatograph coupled to a Finnegan Delta-Plus IRMS and GCC III (isoLink). Samples were analyzed alongside a set of amino acid standards of known δ13C and δ15N values. Amino acids included in analysis were: alanine (Ala), glycine (Gly), threonine (Thr), serine (Ser), valine (Val), leucine (Leu), isoleucine (Ile), proline (Pro), aspartic acid/asparagine (Asx), glutamic acid/glutamine (Glx), phenylalanine (Phe), and lysine (Lys).
Doherty, S. C., Christensen, S., Davis, C. V., McCarthy, M. D. (2025). Compound-specific nitrogen stable isotopes of amino acids in planktic foraminifera from Santa Barbara Basin sediment traps from 2018 to 2021. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2025-12-01 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/989777 [access date]
Terms of Use
This dataset is licensed under Creative Commons Attribution 4.0.
If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.