| Size fractionated Amino Acid data collected in the Sargasso Sea during BIOS-SCOPE cruises AE2114 and AE2123 in August and November 2021 | The mesh filter was sonicated for three minutes in an acid-clean polypropylene Nalgene bottle with filtered seawater.
| sonicator |
| Size fractionated carbohydrate data collected in the Sargasso Sea during BIOS-SCOPE cruises AE2114 and AE2123 in August and November 2021 | The mesh filter was sonicated for three minutes in an acid-clean polypropylene Nalgene bottle with filtered seawater.
| sonicator |
| The mesh filter was sonicated for three minutes in an acid-clean polypropylene Nalgene bottle with filtered seawater.
| sonicator |
| Brooded coral larval size, protein content, symbiont (Symbiodinium) densities, maximum photochemical efficiency of PSII (Cumbo, 2012) from Taiwan, 2010 (Cumbo, 2012) (MCR LTER project, Climate_Coral_Larvae project) | Branson Digital Sonifier S-250D, USA
| sonicator |
| Protein content of brooded coral larvae at high and ambient temperature and pCO2, March 2011 (Cumbo et al, JEMBE, 2013) (MCR LTER & Climate Coral Larvae projects) | Branson Digital Sonifier
| sonicator |
| Respiration and protein content of brooded coral larvae at high and ambient temperature and pCO2, Taiwan, March 2011 (Cumbo et al, JEMBE, 2013) (MCR LTER & Climate Coral Larvae projects) | Branson Digital Sonifier
| sonicator |
| Reactive oxygen species are linked to the toxicity of the dinoflagellate Alexandrium spp. to protists | The Fisher Scientific™ Model 50 Sonic Dismembrator is compact, portable and extremely simple to operate. Weighing less than 4 lb., this model is the smallest unit on the market and is highly effective for cell disruption, sample preparation and many other small volume applications.
| Sonic dismembrator (Model 50, Fisher Scientific) |
| Influence of predator-prey evolutionary history, chemical alarm-cues and feeding selection on induction of toxin production in a marine dinoflagellate | The Fisher Scientific™ Model 50 Sonic Dismembrator is compact, portable and extremely simple to operate. Weighing less than 4 lb., this model is the smallest unit on the market and is highly effective for cell disruption, sample preparation and many other small volume applications.
| Sonic dismembrator (Model 50, Fisher Scientific) |
| A multi-phylum study of grazer-induced paralytic shellfish toxin production in the dinoflagellate Alexandrium fundyense: A new perspective on control of algal toxicity | The Fisher Scientific™ Model 50 Sonic Dismembrator is compact, portable and extremely simple to operate. Weighing less than 4 lb., this model is the smallest unit on the market and is highly effective for cell disruption, sample preparation and many other small volume applications.
| Sonic dismembrator (Model 50, Fisher Scientific) |
| Toxin content of Alexandrium catenella in response of nitrogen sources, algal alarm cues, and grazer exposure | The Fisher Scientific™ Model 50 Sonic Dismembrator is compact, portable and extremely simple to operate. Weighing less than 4 lb., this model is the smallest unit on the market and is highly effective for cell disruption, sample preparation and many other small volume applications.
| Sonic dismembrator (Model 50, Fisher Scientific) |
| Ambient concentrations of acetate, glycerol, and mannitol measured from samples collected during R/V Endeavor cruise EN616 in the northwest Atlantic in July 2018 | To further concentrate the samples, the ethanol solutions were dried down under a gentle nitrogen gas stream at 70°C and reconstituted in 100µL of fresh ethanol and sonicated for 120min.
| sonicator |
| Diel multi 'omics data from surface ocean microbial community samples collected during Hawaiʻi Diel Sampling (HaDS) in Kāneʻohe Bay and adjacent offshore waters of Oʻahu, Hawaiʻi from December 2020 to August 2021 | mechanical shearing of genomic DNA
| Covaris S220 focused-ultrasonicator system |
| Effect of Marine Snow Distribution on Copepod Ingestion of Marine Snow Experiments 2018 | | sonicator |
| Data pertaining to the development of larvae past the planula stage from experiments investigating heat priming in Nematostella vectensis | | water bath sonicator (Diagenode UCD-200; Diagenode Inc., Denville, NJ, USA) |
| Data pertaining to dose-response curves (DRC) quantifying survival of larvae after exposure to heat ramps from experiments investigating heat priming in Nematostella vectensis | | water bath sonicator (Diagenode UCD-200; Diagenode Inc., Denville, NJ, USA) |
| Expression of heat shock protein 70 (HSP70) in larvae at 11 days post-fertilization (DPF) from experiments investigating heat priming in Nematostella vectensis | | water bath sonicator (Diagenode UCD-200; Diagenode Inc., Denville, NJ, USA) |
| Heat tolerance (survival) of juveniles at 6 WPF following heat shock from experiments investigating heat priming in Nematostella vectensis | | water bath sonicator (Diagenode UCD-200; Diagenode Inc., Denville, NJ, USA) |
| Lethal temperature 50s (LT50s) displayed by larvae derived from dose-response curves after heat shock from experiments investigating heat priming in Nematostella vectensis | | water bath sonicator (Diagenode UCD-200; Diagenode Inc., Denville, NJ, USA) |
| Long-term body column lengths and tentacle numbers of larvae and juveniles from experiments investigating heat priming in Nematostella vectensis | | water bath sonicator (Diagenode UCD-200; Diagenode Inc., Denville, NJ, USA) |
| Respiration rates and protein content of larvae from experiments investigating heat priming in Nematostella vectensis | | water bath sonicator (Diagenode UCD-200; Diagenode Inc., Denville, NJ, USA) |
| Sizes of larvae from 4-11 days post-fertilization from experiments investigating heat priming in Nematostella vectensis | | water bath sonicator (Diagenode UCD-200; Diagenode Inc., Denville, NJ, USA) |
| Metaproteomics analyses of mixed-layer water from Hawaii Ocean Time-series Station ALOHA, collected on R/V Kilo Moana cruise KM2204 in March 2022, and incubated with 15N2 to track biosynthetic incorporation by diazotrophic microbes | | QSonica Q500 |
| Supplementary Table 3B: Replicate cell counts for the 11 samples and alkaline phosphatase activity measurements available for any of the 11 samples | Cell separation was performed through sonication with Diagenode Bioruptor sonication device.
| Diagenode Bioruptor |
| Metegenomic sequences from Lau Basin low temperature vents and Loihi Seamount; from R/V Roger Revelle and R/V Thomas G. Thompson cruises RR1211 and TN225 in the Northeast Lau Basin, Loihi Seamount from 2008-2012 | | Covaris S2 sonicator |
| Major inorganic ions in Primary Marine Aerosols (PMA) generated from seawater collected near the BATS station during R/V Atlantic Explorer cruises AE2113 (July 2021) and AE2303 (January 2023) | To process the samples, 5 mL of high purity laboratory water (Milli-Q brand water) was added to each Simport vial containing a PMA sample filter followed by alternating steps of vortexing (5 min) and sonicating (5 min) three times.
| Branson 1200 (model B1200R-1) |
| Calcification Rates and Biomass of 4 Coral Species, 2 Temperatures and 2 pCO2 Levels from Experiments at LTER site in Moorea, French Polynesia, 2011 (OA_Corals project) | Ultrasonic dismembrator (Fisher model 216 15-338-550; fitted with a 3.2 mm diameter probe, Fisher 15-338-67)
| |
| Tank seawater conditions from Coral/Temperature/pCO2 Experiments at LTER site in Moorea, French Polynesia, 2011 (OA_Corals project) | Ultrasonic dismembrator (Fisher model 216 15-338-550; fitted with a 3.2 mm diameter probe, Fisher 15-338-67)
| |
| Mesozooplankton grazing rates from samples collected in the oceanic Gulf of Mexico on R/V Nancy Foster cruises NF1704 and NF1802 in May 2017 and May 2018 | Wet weight subsamples were placed in borosilicate glass tubes with 7 mL of 90% acetone and homogenized (multiple 20-sec bursts) in an ice bath with a Vibracell sonicator probe.
| Vibracell sonicator probe |
| Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities collected on cruises AT42-22, TN405, and NA108 from May 2019 to Jun 2022 | Input DNA diluted to 50 ng total, or all DNA input (For low concentration samples) and sheared to target 400 bps with Covaris M220 focused-ultrasonicator
| Covaris M220 focused-ultrasonicator |
| Single amplified genomes (SAGs) of chemoautotrophs from global deep sea samples (Dark ocean chemoautotrophs project) | | Covaris focused ultrasonicator |
| Sulfate triple oxygen isotope signatures in Messinian evaporite and barite from cores collected | The closed vials containing sample mixtures were sonicated at room temperature for 60 min and then placed in an 80 °C oven for 16 h.
| Sonicated |
| Comparative analysis of tissue biomass and energy reserves of six coral species from nearshore and offshore reefs in Palau, Micronesia during March 2017 | The samples were sonicated at 35% intensity for 2 minutes using a Fisher Scientific model CL-18 sonicator.
| Sonicator model CL-18, Fisher Scientific |
©2020 Biological and Chemical Oceanography Data Management Office.