| Flow cytometry, 16S rRNA gene amplicons, chlorophyll a, and surface seawater measurements taken between August 2017 to June 2019 Kāneʻohe Bay, Oʻahu, Hawaiʻi | Description of ampicon library.
| design_description |
| Flow cytometry, 16S rRNA gene amplicons, chlorophyll a, and surface seawater measurements taken between August 2017 to June 2019 Kāneʻohe Bay, Oʻahu, Hawaiʻi | Single or paired end sequencing reads.
| library_layout |
| Flow cytometry, 16S rRNA gene amplicons, chlorophyll a, and surface seawater measurements taken between August 2017 to June 2019 Kāneʻohe Bay, Oʻahu, Hawaiʻi | Mode of library creation.
| library_selection |
| Flow cytometry, 16S rRNA gene amplicons, chlorophyll a, and surface seawater measurements taken between August 2017 to June 2019 Kāneʻohe Bay, Oʻahu, Hawaiʻi | Source of sequencing library.
| library_source |
| Flow cytometry, 16S rRNA gene amplicons, chlorophyll a, and surface seawater measurements taken between August 2017 to June 2019 Kāneʻohe Bay, Oʻahu, Hawaiʻi | Sequencing library type.
| library_strategy |
| Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, Hawaiʻi | Description of ampicon library.
| Amplicon_design_description |
| Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, Hawaiʻi | Single or paired end sequencing reads for amplicon data.
| Amplicon_library_layout |
| Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, Hawaiʻi | Source of sequencing library for amplicon data.
| Amplicon_library_source |
| Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, Hawaiʻi | Sequencing library type for amplicon data.
| Amplicon_library_strategy |
| Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, Hawaiʻi | Description of metagenome library.
| Metagenome_design_description |
| Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, Hawaiʻi | Single or paired end sequencing reads for metagenomes.
| Metagenome_library_layout |
| Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, Hawaiʻi | Selection used for sequencing library for metagenomes.
| Metagenome_library_selection |
| Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, Hawaiʻi | Sequencing library type for metagenomes.
| Metagenome_library_strategy |
| Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii | Type of sequencing assay performed: WGS or RNA-Seq
| Assay_Type |
| Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii | The average length of the spots (reads) in the run
| AvgSpotLen |
| Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii | The total number of bases sequenced
| Bases |
| Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii | NCBI BioSample package representing type of biosample and required attributes
| BioSampleModel |
| Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii | The name of the sequencing center
| Center_Name |
| Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii | The file type stored in the NCBI DataStore (e.g., FASTQ, BAM)
| DATASTORE_filetype |
| Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii | The provider of the DataStore where files are kept
| DATASTORE_provider |
| Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii | The geographical region of the DataStore
| DATASTORE_region |
| Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii | Single or paired end sequencing reads
| LibraryLayout |
| Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii | Selection used for sequencing library
| LibrarySelection |
| Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii | Source material of sequencing library
| LibrarySource |
| High-throughput sequencing of the 16S rRNA gene, microscopy, and flow cytometry of pyrosome-associated microorganisms compared to seawater sampled during a Pyrosoma atlanticum bloom in the Northern California Current System in July 2018. | Description explaining how this library was prepared and sequenced
| design_description |
| High-throughput sequencing of the 16S rRNA gene, microscopy, and flow cytometry of pyrosome-associated microorganisms compared to seawater sampled during a Pyrosoma atlanticum bloom in the Northern California Current System in July 2018. | single or paired end sequencing reads
| library_layout |
| High-throughput sequencing of the 16S rRNA gene, microscopy, and flow cytometry of pyrosome-associated microorganisms compared to seawater sampled during a Pyrosoma atlanticum bloom in the Northern California Current System in July 2018. | Selection used for sequencing library
| library_selection |
| High-throughput sequencing of the 16S rRNA gene, microscopy, and flow cytometry of pyrosome-associated microorganisms compared to seawater sampled during a Pyrosoma atlanticum bloom in the Northern California Current System in July 2018. | Source of sequencing library
| library_source |
| High-throughput sequencing of the 16S rRNA gene, microscopy, and flow cytometry of pyrosome-associated microorganisms compared to seawater sampled during a Pyrosoma atlanticum bloom in the Northern California Current System in July 2018. | Sequencing library strategy
| library_strategy |
| High-throughput sequencing of the 16S rRNA gene, microscopy, and flow cytometry of pyrosome-associated microorganisms compared to seawater sampled during a Pyrosoma atlanticum bloom in the Northern California Current System in July 2018. | Library title
| title |
| Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female from the R/V Tiglax and R/V Sikuliaq in the Northern Gulf of Alaska from 2015-2022 | Title of the the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) experiment metadata table (SRX). Descriptive name of individual samples. All samples of stage CV individuals were preserved immediately. All samples of adult females labeled either Week 0 or Time 0 were preserved right after collection, samples with other time stamps (weeks or hours) were incubated in the laboratory for the specified amount of time prior to preservation
| Experiment_Title |
| Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female from the R/V Tiglax and R/V Sikuliaq in the Northern Gulf of Alaska from 2015-2022 | Title of the NCBI SRA study
| Study_Title |
| RNAseq data from apparently healthy and Stony Coral Tissue Loss Disease-affected Montastraea cavernosa coral collected from St. Thomas, US Virgin Islands in 2020 | RNA-Seq = samples were prepared for RNA sequencing
| Library_strategy |
| RNAseq data from apparently healthy and Stony Coral Tissue Loss Disease-affected Montastraea cavernosa coral collected from St. Thomas, US Virgin Islands in 2020 | Indicates how the RNA was extracted from each sample.
| RNA_extraction_method |
| RNAseq data from apparently healthy and Stony Coral Tissue Loss Disease-affected Montastraea cavernosa coral collected from St. Thomas, US Virgin Islands in 2020 | all RNA samples were prepared for 150 base-pair, paired-end sequencing
| Sequencing_Strategy |
| RNAseq data from apparently healthy and Stony Coral Tissue Loss Disease-affected Montastraea cavernosa coral collected from St. Thomas, US Virgin Islands in 2020 | All RNA samples were processed for polyA-tail enrichment to remove non-eukaryotic reads
| Sequencing_strategy_details |
| 16S rRNA gene of microorganisms sampled along the Newport Hydrographic (NH) and Trinidad Head (TR) lines, in OR and CA in 2018 and 2019 | Description explaining how this library was prepared and sequenced
| design_description |
| 16S rRNA gene of microorganisms sampled along the Newport Hydrographic (NH) and Trinidad Head (TR) lines, in OR and CA in 2018 and 2019 | single or paired end sequencing reads
| library_layout |
| 16S rRNA gene of microorganisms sampled along the Newport Hydrographic (NH) and Trinidad Head (TR) lines, in OR and CA in 2018 and 2019 | Selection used for sequencing library
| library_selection |
| 16S rRNA gene of microorganisms sampled along the Newport Hydrographic (NH) and Trinidad Head (TR) lines, in OR and CA in 2018 and 2019 | Source of sequencing library
| library_source |
| 16S rRNA gene of microorganisms sampled along the Newport Hydrographic (NH) and Trinidad Head (TR) lines, in OR and CA in 2018 and 2019 | Sequencing library strategy
| library_strategy |
| 16S rRNA gene of microorganisms sampled along the Newport Hydrographic (NH) and Trinidad Head (TR) lines, in OR and CA in 2018 and 2019 | Library title
| title |
| Sequence read accession (SRA) numbers and collection metadata for coral microbiome collected in Moorea, French Polynesia from Jul 2018 to Aug 2020 | Type of DNA sequencing performed
| AssayType |
| Sequence read accession (SRA) numbers and collection metadata for coral microbiome collected in Moorea, French Polynesia from Jul 2018 to Aug 2020 | Total across paired reads
| AvgSpotLen |
| Sequence read accession (SRA) numbers and collection metadata for coral microbiome collected in Moorea, French Polynesia from Jul 2018 to Aug 2020 | Number of bases in the sample
| Bases |
| Sequence read accession (SRA) numbers and collection metadata for coral microbiome collected in Moorea, French Polynesia from Jul 2018 to Aug 2020 | Institution where sequencing was conducted
| CenterName |
| Sequence read accession (SRA) numbers and collection metadata for coral microbiome collected in Moorea, French Polynesia from Jul 2018 to Aug 2020 | Available file types for downloading the raw sequencing data
| DATASTORE_filetype |
| Sequence read accession (SRA) numbers and collection metadata for coral microbiome collected in Moorea, French Polynesia from Jul 2018 to Aug 2020 | Organizations linked to this repository
| DATASTORE_provider |
| Sequence read accession (SRA) numbers and collection metadata for coral microbiome collected in Moorea, French Polynesia from Jul 2018 to Aug 2020 | Data storage region
| DATASTORE_region |
| Sequence read accession (SRA) numbers and collection metadata for coral microbiome collected in Moorea, French Polynesia from Jul 2018 to Aug 2020 | Type of amplicon sequencing performed
| LibraryLayout |
©2020 Biological and Chemical Oceanography Data Management Office.