Dataset: Sulfide concentrations

Name: Sulfide concentrations as a function of time from INSPIRE track 1 collected from 2013 to 2017 (INSPIRE Pyrite project)
Published: 2017-03-13
Keywords: oceans

Cite This Dataset

DOI:10.1575/1912/bco-dmo.684417.1

Temporal Extent: 2013 - 2017

Project:

INSPIRE Track 1: Microbial Sulfur Metabolism and its Potential for Transforming the Growth of Epitaxial Solar Cell Absorbers (INSPIRE_Pyrite)

Principal Investigator:

Peter Girguis (Harvard University)

Co-Principal Investigator:

David Clarke (Harvard University)

Contact:

Aude Picard (Harvard University)

BCO-DMO Data Manager:

Hannah Ake (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2017-03-13

Restricted:

Validated:

Yes

Current State:

Final no updates expected

Sulfide concentrations as a function of time from INSPIRE track 1 collected from 2013 to 2017 (INSPIRE Pyrite project)

Abstract:

Sulfide concentrations as a function of time from INSPIRE track 1 collected from 2013 to 2017 (INSPIRE Pyrite project)

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Archival Copy

Version Date	Archive	Persistent Identifier	Date Assigned
2017-03-13	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.1575/1912/bco-dmo.684417.1	2019-06-11

Description

Sulfide concentrations from INSPIRE track 1.

These data are associated with the paper: Picard A., et al., 2018

Methods & Sampling

Sulfide concentrations as a function of times in cultures of sulfate-reducing bacterium Desulfovibrio hydrothermalis AM13.

Data Processing Description

BCO-DMO Data Processing Notes:

- compiled multiple spreadsheets of sulfide concentrations into one table.
- replaced blank cells with nd.
- reformatted column names to comply with BCO-DMO standards.

Data Files

File
sulfide_concentrations.csv (Comma Separated Values (.csv), 7.96 KB) MD5:fcceb757fe2dc0ee6fc8dfb84ab558dd Primary data file for dataset ID 684417

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-1344241

Deployments

Deployment	Synonyms	Start Date	Platform	Investigator
Girguis_2013		2013-09-01	lab Harvard		data info

Instruments

Raman Microscope

Supplied Name: Microscope

Supplied Description:

Used to analyze cultures

Instrument Type

Generic Name: Raman Microscope

Generic Description:

The Raman microscope is a laser-based microscopic device used to perform Raman spectroscopy. The Raman microscope begins with a standard optical microscope, and adds an excitation laser, laser rejection filters, a spectrometer or monochromator, and an optical sensitive detector such as a charge-coupled device (CCD), or photomultiplier tube, (PMT). One example is the XploRA confocal Raman microscope (information from the manufacturer).

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
experiment_type	Abiotic or biotic experiment	unitless	exp_type
time	Time in hours	hours	time_inc
sulfide_culture1	Sulfide concentrations as a function of time in cultures of AM13 with trace Fe(II)	micromolar (mM)	sulfide
sulfide_culture2	Sulfide concentrations as a function of time in cultures of AM13 with trace Fe(II)	micromolar (mM)	sulfide
sulfide_culture3	Sulfide concentrations as a function of time in cultures of AM13 with trace Fe(II)	micromolar (mM)	sulfide
sulfide_culture1_Fe	Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II)	micromolar (mM)	sulfide
sulfide_culture2_Fe	Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II)	micromolar (mM)	sulfide
sulfide_culture3_Fe	Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II)	micromolar (mM)	sulfide
sulfide_culture4_Fe	Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II)	micromolar (mM)	sulfide
sulfide_control1_slow	Sulfide added as a function of time in the medium	micromolar (mM)	sulfide
sulfide_control2_slow	Sulfide added as a function of time in the medium	micromolar (mM)	sulfide
culture_medium	Description of culture medium	unitless	sample_descrip