Dataset: Copepod RNA-Seq sample information and accessions
Data Citation:
Hartline, D., Lenz, P., Hopcroft, R., Roncalli, V., Cieslak, M. (2020) RNA-Seq sample information and accessions numbers for the copepods Neocalanus flemingeri (Prince William Sound, Gulf of Alaska)(2015-2017) and Labidocera madurae (Kane‘ohe Bay, Oahu, Hawaii)(2017). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-09-11 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.821289.1 [access date]
Terms of Use
This dataset is licensed under Creative Commons Attribution 4.0.
If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.
DOI:10.26008/1912/bco-dmo.821289.1
Spatial Extent: N:60.535 E:-147.8033 S:21.2833 W:-157.1167
Temporal Extent: 2015-05 - 2017-09
Project:
Lead Principal Investigator:
Daniel K. Hartline (University of Hawaiʻi at Mānoa)
Principal Investigator:
Petra H. Lenz (University of Hawaiʻi at Mānoa)
Co-Principal Investigator:
Russell R. Hopcroft (University of Alaska Fairbanks, UAF)
Scientist:
Vittoria Roncalli (University of Hawaiʻi at Mānoa)
Data Manager:
Matthew C. Cieslak (University of Hawaiʻi at Mānoa)
BCO-DMO Data Manager:
Amber D. York (Woods Hole Oceanographic Institution, WHOI BCO-DMO)
Version:
2
Version Date:
2020-12-11
Restricted:
No
Validated:
No
Current State:
Under revision
RNA-Seq sample information and accessions numbers for the copepods Neocalanus flemingeri (Prince William Sound, Gulf of Alaska)(2015-2017) and Labidocera madurae (Kane‘ohe Bay, Oahu, Hawaii)(2017)
Abstract:
This dataset includes accession information for RNA-seq data for the copepods Neocalanus flemingeri and Labidocera madurae used to generate de novo reference transcriptomes and for gene expression analysis. N. flemingeri adult females (CVI) were collected in Prince Williams Sound (Gulf of Alaska) during the fall (September 2015 and 2017) oceanographic cruises of the Seward line long-term observation program (ltop)(http://www.sfos.uaf.edu/sewardline/) and Northern Gulf of Alaska Long-Term Ecological Research Program (NGA LTER). For each sample collection date and preservation dates are listed. Labidocera madurae adult females (CVI) and mixed copepodid stages (CIII-CV) were collected in Kane‘ohe Bay, Oahu (Hawaii) in August 2015.