Dataset: Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015

Name: Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015
Published: 2023-10-27
Keywords: coral bleaching, coral microbiome, disease, Coral, microbiome, bleaching, biota, oceans

ValidatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.847425.1Version 1 (2023-10-27)Dataset Type:Other Field Results

Principal Investigator: Rebecca Vega Thurber (Oregon State University)

Co-Principal Investigator: Erinn M. Muller (Mote Marine Laboratory)

Student, Contact: Grace J. Klinges (Oregon State University)

BCO-DMO Data Manager: Taylor Heyl (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility (Coral Rickettsiales)

Abstract

This dataset contains information about sequences of coral the Acropora cervicornis collected from host colonies (genets) at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys, USA in August and September of 2015. The sequence data can be found in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database under accession number SRP267474 with the associated BioProject PRJNA639601.

Cite Dataset

Centroid: latitude: 24.5627, longitude: -81.4005
Temporal Extent: 2015-08-01 - 2015-09-30

Sequence data can be found in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database under accession number SRP267474 with the associated BioProject PRJNA639601. Additional metadata related to the NCBI submission are provided in Supplemental File "MIMARKS.specimen.host-associated.5.0.xlsx".

Related Datasets

Oregon State University. Disease-susceptible and -resistant Acropora cervicornis genotypes before and after bleaching. 2020/06. In: BioProject [Internet]. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information; 2011-. Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA639601. NCBI:BioProject: PRJNA639601.

Related Publications

Results

Klinges, G., Maher, R. L., Vega Thurber, R. L., & Muller, E. M. (2020). Parasitic 'Candidatus Aquarickettsia rohweri' is a marker of disease susceptibility in Acropora cervicornis but is lost during thermal stress. Environmental Microbiology, 22(12), 5341–5355. Portico. https://doi.org/10.1111/1462-2920.15245

Methods

Apprill, A., McNally, S., Parsons, R., & Weber, L. (2015). Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton. Aquatic Microbial Ecology, 75(2), 129–137. doi:10.3354/ame01753

Methods

Baums, I., Hughes, C., & Hellberg, M. (2005). Mendelian microsatellite loci for the Caribbean coral Acropora palmata. Marine Ecology Progress Series, 288, 115–127. doi:10.3354/meps288115

Methods

Durham, B. P., Grote, J., Whittaker, K. A., Bender, S. J., Luo, H., Grim, S. L., Brown, J. M., Casey, J. R., Dron, A., Florez-Leiva, L., Krupke, A., Luria, C. M., Mine, A. H., Nigro, O. D., Pather, S., Talarmin, A., Wear, E. K., Weber, T. S., Wilson, J. M., … Rappé, M. S. (2014). Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome. Standards in Genomic Sciences, 9(3), 632–645. https://doi.org/10.4056/sigs.4998989

Methods

Muller, E. M., Bartels, E., & Baums, I. B. (2018). Bleaching causes loss of disease resistance within the threatened coral species Acropora cervicornis. eLife, 7. doi:10.7554/elife.35066

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Dataset: Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015

ValidatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.847425.1Version 1 (2023-10-27)Dataset Type:Other Field Results

Principal Investigator: Rebecca Vega Thurber (Oregon State University)

Co-Principal Investigator: Erinn M. Muller (Mote Marine Laboratory)

Student, Contact: Grace J. Klinges (Oregon State University)

BCO-DMO Data Manager: Taylor Heyl (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility (Coral Rickettsiales)

Abstract

Cite Dataset

Centroid: latitude: 24.5627, longitude: -81.4005
Temporal Extent: 2015-08-01 - 2015-09-30

Related Datasets

Related Publications

Results

Methods

Baums, I., Hughes, C., & Hellberg, M. (2005). Mendelian microsatellite loci for the Caribbean coral Acropora palmata. Marine Ecology Progress Series, 288, 115–127. doi:10.3354/meps288115

Methods

Muller, E. M., Bartels, E., & Baums, I. B. (2018). Bleaching causes loss of disease resistance within the threatened coral species Acropora cervicornis. eLife, 7. doi:10.7554/elife.35066

Data File(s)	Type	Description	Action
847425_v1_bleaching_sequences.csv (33.42 KB)	Comma Separated Values (.csv)	Primary data file for dataset ID 847425, version 1.	Download View Table What is ERDDAP? SUBSET DATA VIEW TABLE CSV TSV MATLAB netCDF

Supplemental File(s)	Type	Description	Action
MIMARKS.specimen.host-associated.5.0.xlsx (28.28 KB)	Octet Stream	Supplemental file for dataset ID 847425, version 1. This is an Excel file containing the MIMARKS metadata associated with the NCBI BioSample Submission.	Download

Data File(s)	Type	Description	Action
847425_v1_bleaching_sequences.csv (33.42 KB)	Comma Separated Values (.csv)	Primary data file for dataset ID 847425, version 1.	Download View Table What is ERDDAP? SUBSET DATA VIEW TABLE CSV TSV MATLAB netCDF

Supplemental File(s)	Type	Description	Action
MIMARKS.specimen.host-associated.5.0.xlsx (28.28 KB)	Octet Stream	Supplemental file for dataset ID 847425, version 1. This is an Excel file containing the MIMARKS metadata associated with the NCBI BioSample Submission.	Download

Dataset: Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015

Principal Investigator: Rebecca Vega Thurber (Oregon State University)

Co-Principal Investigator: Erinn M. Muller (Mote Marine Laboratory)

Student, Contact: Grace J. Klinges (Oregon State University)

BCO-DMO Data Manager: Taylor Heyl (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility (Coral Rickettsiales)

Abstract

Files

Supplemental Files

Related Datasets

Related Publications

Dataset: Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015

Principal Investigator: Rebecca Vega Thurber (Oregon State University)

Co-Principal Investigator: Erinn M. Muller (Mote Marine Laboratory)

Student, Contact: Grace J. Klinges (Oregon State University)

BCO-DMO Data Manager: Taylor Heyl (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility (Coral Rickettsiales)

Abstract

Files

Supplemental Files

Related Datasets

Related Publications

Dataset: Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015

Principal Investigator: Rebecca Vega Thurber (Oregon State University)

Co-Principal Investigator: Erinn M. Muller (Mote Marine Laboratory)

Student, Contact: Grace J. Klinges (Oregon State University)

BCO-DMO Data Manager: Taylor Heyl (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility (Coral Rickettsiales)

Abstract

Metadata

Files

Supplemental Files

Related Datasets

Related Publications

Dataset: Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015

Principal Investigator: Rebecca Vega Thurber (Oregon State University)

Co-Principal Investigator: Erinn M. Muller (Mote Marine Laboratory)

Student, Contact: Grace J. Klinges (Oregon State University)

BCO-DMO Data Manager: Taylor Heyl (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility (Coral Rickettsiales)

Abstract

Metadata

Files

Supplemental Files

Related Datasets

Related Publications