Dataset: Analysis protocols, sample information, code, and datasets associated with the manuscript Structure and long-term stability of the microbiome in diverse diatom cultures from samples collected in Guam, California, and Gulf of Mexico between 2008 and 2016

Name: Analysis protocols, sample information, code, and datasets associated with the manuscript Structure and long-term stability of the microbiome in diverse diatom cultures from samples collected in Guam, California, and Gulf of Mexico between 2008 and 2016
Published: 2021-07-15
Keywords: diatom, microbiome, oceans

ValidatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.855750.1Version 1 (2021-07-15)Dataset Type:Other Field Results

Principal Investigator: James Jeffrey Morris (University of Alabama at Birmingham)

Co-Principal Investigator: Matt Ashworth (University of Texas at Austin)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Ecology and Evolution of Microbial Interactions in a Changing Ocean (LTPE)

Abstract

Analysis protocols, sample information, code, and datasets associated with the manuscript Structure and long-term stability of the microbiome in diverse diatom cultures. Sequence data is available from the NCBI SRA archive, BioProject PRJNA706454.

Cite Dataset

Spatial Extent: N:33.71 E:-80.78 S:13.25 W:144.70
Temporal Extent: 2008-08-18 - 2015-11-19

73

Views

271

Downloads

These numbers come from web analytics and reflect real user activity on the site. They reliably show dataset usage and are mostly free of bot traffic.

See "Data Files" section for access to download the data and analysis code "Ashworth_data_and_analysis.zip". The sample information and genetic accession identifiers are available as a data table from this page.

Related Datasets

Morris, J. J., University of Alabama at Birmingham (2021). Structure and Long-Term Stability of the Microbiome in Diverse Diatom Cultures. 2021/03. In NCBI:BioProject: PRJNA706454. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information; Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA706454.

Related Publications

Results

Barreto Filho, M. M., Walker, M., Ashworth, M. P., & Morris, J. J. (2021). Structure and Long-Term Stability of the Microbiome in Diverse Diatom Cultures. Microbiology Spectrum. doi:10.1128/spectrum.00269-21

Methods

Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg-Lyons, D., Lozupone, C. A., Turnbaugh, P. J., … Knight, R. (2010). Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proceedings of the National Academy of Sciences, 108(Supplement_1), 4516–4522. doi:10.1073/pnas.1000080107

Methods

Guillard, R. R. L. (1975). Culture of Phytoplankton for Feeding Marine Invertebrates. Culture of Marine Invertebrate Animals, 29–60. doi:10.1007/978-1-4615-8714-9_3

Methods

Kozich, J. J., Westcott, S. L., Baxter, N. T., Highlander, S. K., & Schloss, P. D. (2013). Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform. Applied and Environmental Microbiology, 79(17), 5112–5120. doi:10.1128/aem.01043-13

Software

R Core Team (2020). R: A language and environment for statistical computing. R v4.0.3. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/

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Dataset: Analysis protocols, sample information, code, and datasets associated with the manuscript Structure and long-term stability of the microbiome in diverse diatom cultures from samples collected in Guam, California, and Gulf of Mexico between 2008 and 2016

ValidatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.855750.1Version 1 (2021-07-15)Dataset Type:Other Field Results

Principal Investigator: James Jeffrey Morris (University of Alabama at Birmingham)

Co-Principal Investigator: Matt Ashworth (University of Texas at Austin)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Ecology and Evolution of Microbial Interactions in a Changing Ocean (LTPE)

Abstract

Cite Dataset

Spatial Extent: N:33.71 E:-80.78 S:13.25 W:144.70
Temporal Extent: 2008-08-18 - 2015-11-19

73

Views

271

Downloads

These numbers come from web analytics and reflect real user activity on the site. They reliably show dataset usage and are mostly free of bot traffic.

Related Datasets

Related Publications

Results

Methods

Guillard, R. R. L. (1975). Culture of Phytoplankton for Feeding Marine Invertebrates. Culture of Marine Invertebrate Animals, 29–60. doi:10.1007/978-1-4615-8714-9_3

Methods

Software

R Core Team (2020). R: A language and environment for statistical computing. R v4.0.3. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/

Data File(s)	Type	Description	Action
Ashworth_data_and_analysis.zip (18.51 KB)	ZIP Archive (ZIP)	READ ME for Filho et al. (2021) data and data analysis package. Code and data files described below are packaged within Ashworth_data_and_analysis.zip. References to figures and tables below refer to the results paper "Structure and Long-Term Stability of the Microbiome in Diverse Diatom Cultures," Filho et al. (2021). This data archival package contains 11 files: 1. This readme.txt fil... Show more	Ashworth_data_and_analysis.zip
longterm_microbe_sample_info.csv (3.45 KB)	Comma Separated Values (.csv)	Primary data file for dataset ID 855750	longterm_microbe_sample_info.csv View Table

Data File(s)	Type	Description	Action
Ashworth_data_and_analysis.zip (18.51 KB)	ZIP Archive (ZIP)	READ ME for Filho et al. (2021) data and data analysis package. Code and data files described below are packaged within Ashworth_data_and_analysis.zip. References to figures and tables below refer to the results paper "Structure and Long-Term Stability of the Microbiome in Diverse Diatom Cultures," Filho et al. (2021). This data archival package contains 11 files: 1. This readme.txt fil... Show more	Ashworth_data_and_analysis.zip
longterm_microbe_sample_info.csv (3.45 KB)	Comma Separated Values (.csv)	Primary data file for dataset ID 855750	longterm_microbe_sample_info.csv View Table

Dataset: Analysis protocols, sample information, code, and datasets associated with the manuscript Structure and long-term stability of the microbiome in diverse diatom cultures from samples collected in Guam, California, and Gulf of Mexico between 2008 and 2016

Principal Investigator: James Jeffrey Morris (University of Alabama at Birmingham)

Co-Principal Investigator: Matt Ashworth (University of Texas at Austin)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Ecology and Evolution of Microbial Interactions in a Changing Ocean (LTPE)

Abstract

Metadata

73

271

Files

Related Datasets

Related Publications

Dataset: Analysis protocols, sample information, code, and datasets associated with the manuscript Structure and long-term stability of the microbiome in diverse diatom cultures from samples collected in Guam, California, and Gulf of Mexico between 2008 and 2016

Principal Investigator: James Jeffrey Morris (University of Alabama at Birmingham)

Co-Principal Investigator: Matt Ashworth (University of Texas at Austin)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Ecology and Evolution of Microbial Interactions in a Changing Ocean (LTPE)

Abstract

Metadata

73

271

Files

Related Datasets

Related Publications