Dataset: Parasite taxonomic and life cycle information

Name: Parasite taxonomic and life cycle information from literature
Published: 2023-05-11
Keywords: Deep-sea, hydrothermal vents, parasites, life cycle, East Pacific Rise, kelp forests, Palmyra Atoll, oceans

Cite This Dataset

DOI:10.26008/1912/bco-dmo.879253.2

Spatial Extent: N:34.394 E:-104.292 S:5.884 W:-162.078

Project:

Trajectories in functional diversity after disturbance at vents on the East Pacific Rise (EPR Functional Diversity)

Principal Investigator:

Lauren Dykman (Woods Hole Oceanographic Institution, WHOI)

Contact:

Lauren Dykman (Woods Hole Oceanographic Institution, WHOI)

BCO-DMO Data Manager:

Karen Soenen (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Amber D. York (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2023-05-11

Restricted:

Validated:

Yes

Current State:

Final no updates expected

Parasite taxonomic and life cycle information from literature

Abstract:

Aggregated summary table of metazoan parasite species from atoll lagoon sandflats (Vidal-Martínez et al. 2012, Vidal-Martínez et al. 2017, McLaughlin 2018, González-Solís et al. 2019, Soler-Jiménez et al. 2019), kelp forests (Morton et al. 2021), and deep-sea hydrothermal vents included in analyses in Dykman et al. (2023). The summary table also includes taxonomic and life cycle information for each parasite species compiled from literature, and rationale for inclusion or exclusion from analyses in Dykman et al. (2023).

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Archival Copy

Version Date	Archive	Persistent Identifier	Date Assigned
2023-05-11	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.26008/1912/bco-dmo.879253.2	2023-05-12

Methods & Sampling

This dataset reports taxonomy, rationale for life history trait assignments based on literature, and rationale for inclusion or exclusion from certain diversity analyses for between-ecosystem comparative analyses in Dykman et al. (2023).

This is a summary table aggregating parasite species and morphogroups from three published dissection datasets: intertidal lagoon sand flats of Palmyra Atoll (5.884° latitude, -162.078° longitude) (Vidal-Martínez et al. 2012, Vidal-Martínez et al. 2017, McLaughlin 2018, González-Solís et al. 2019, Soler-Jiménez et al. 2019); kelp forests on the coast of Santa Barbara, California (34.394° latitude, -119.730° longitude) (Morton et al. 2021); and deep-sea hydrothermal vents at 9°50’N on the East Pacific Rise (9.840° latitude, -104.292° longitude) (Dykman et al. 2022). Subsetting procedures for the three dissection data sets that resulted in the final species list are provided on Zenodo.

Data Processing Description

BCO-DMO Processing Notes:
*Added Notes field
* Replaced , with ; to comply with database requirements
* Dataset version 1 primary data file (version data 2022-08-25) replaced with version 2 (2023-05-11). The change is due to "Two parasite morphospecies names were updated based on new genetic information."

* File "PARASITES_VENT_SPECIES_LIST_LIFE_CYCLES.xlsx" (submitted to bcodmo on 2023-05-11) loaded as a data table into the BCO-DMO data system. Values "NO" "NR" and "NA" were identified as missing data values but preserved as strings within the data table instead of becoming blank (null) values to indicate no data. No modifications were made to the column names or values.
* In this version 2, two parasite species name rows were removed because they were combined with other morphospecies names based on new genetic information.

Data Files

File
parasites_vent_species_list_life_cycles.csv (Comma Separated Values (.csv), 165.85 KB) MD5:eedfb915cb69cd6ca0ca9be67bca68f5 Primary data table for dataset 879253 version 2.

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-1829773

Deployments

None available yet

Instruments

None available yet

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
PARASITE_SPECIES_NAME	The name used to uniquely identify a parasite species or morphogroup consistent with their species names in Vidal-Martínez et al. (2012), Vidal-Martínez et al. (2017), McLaughlin (2018), González-Solís et al. (2019), Soler-Jiménez et al. (2019), Morton et al. (2021), and Dykman et al. (2022).	unitless	species
ECOSYSTEM	The ecosystem where the parasite species was found including Atoll lagoon sandflat (Vidal-Martínez et al. 2012, Vidal-Martínez et al. 2017, McLaughlin 2018, González-Solís et al. 2019, Soler-Jiménez et al. 2019), Kelp forest (Morton et al. 2021), and Vent (Dykman et al. 2022).	unitless	region
DATA_SOURCE	A citation for the dataset in which the parasite species or morphogroup was reported.	unitless	reference_paper
HOST_GROUP_COMMON_NAME_SIMPLE	The simplified taxonomic group of the host, either Fish or Invertebrate, consistent with the grouping for analyses in Dykman et al. (2023).	unitless	sample_descrip
PARASITE_PHYLUM	The current accepted phylum of the parasite species or morphogroup from World Register of Marine Species [accessed 2022-04-15].	unitless	phylum
PARASITE_CLASS	If known, the current accepted class of the parasite species or morphogroup from World Register of Marine Species [accessed 2022-04-15]. Missing data identifier: NA (unknown).	unitless	class
PARASITE_ORDER	If known, the current accepted order of the parasite species or morphogroup from World Register of Marine Species [accessed 2022-04-15]. Missing data identifier: NA (unknown).	unitless	order
PARASITE_FAMILY	If known, the current accepted family of the parasite species or morphogroup from World Register of Marine Species [accessed 2022-04-15]. Missing data identifier: NA (unknown).	unitless	family
PARASITE_GENUS	If known, the current accepted genus of the parasite species or morphogroup from World Register of Marine Species [accessed 2022-04-15]. Missing data identifier: NA (unknown).	unitless	genus
PARASITE_SPECIES	If known, the current accepted specific epithet of the parasite species or morphogroup from World Register of Marine Species [accessed 2022-04-15]. This corresponds to the Darwin Core term specificEpithet http://rs.tdwg.org/dwc/terms/specificEpithet. Missing data identifier: NA (unknown).	unitless	species
PARASITE_GROUP_COMMON_NAME	The common name used to refer to the parasite taxonomic group in Dykman et al. (2023). These include: Acanthocephala, Cestoda, Copepoda, Isopoda, Monogenea, Nematoda, Rhizocephala, Trematoda.	unitless	common_name
PARASITE_SPECIES_NAME_AphiaID	Numerical identifier from World Register of Marine Species that matches the lowest known taxonomic level of the parasite species or morphogroup name.	unitless	taxon_code
PARASITE_SPECIES_NAME_LSID	Machine-readable Life Science Identifier (LSID) containing the AphiaID from World Register of Marine Species that matches the lowest known taxonomic level of the parasite species or morphogroup name. This corresponds to Darwin Core term http://rs.tdwg.org/dwc/terms/scientificNameID.	unitless	taxon_code
PARASITE_COUNT	An aggregated count of individuals in a given parasite species or morphogroup included in the analyses in Dykman et al. (2023) pooled across all host individuals and species.	unitless	count
EXCLUDED_FROM_ANAYSES	Whether the parasite species or morphogroup was excluded from any analyses in Dykman et al. (2023), and, if so, which ones. NA indicates the parasite morphogroup was included in all analyses. Missing data identifier: NA (not applicable).	unitless	sample_descrip
RATIONALE_FOR_EXCLUSION	If a parasite species or morphogroup was excluded from some analyses, a detailed explanation as to why it was excluded. Missing data identifier: NA (not applicable).	unitless	sample_descrip
PARASITE_LIFE_STAGE	The life stage of the parasite or other symbiont. “Adult” indicates the specimen is in the adult sexually reproductive stage and has mature, developed reproductive organs; “Adult, immature” indicates it is in its adult stage but is immature and has not yet developed reproductive organs; “Larva” is the non-reproductive nematode life stage found in intermediate hosts; “Cystacanth” is the encysting acanthocephalan life stage found in intermediate hosts; “Metacestode” is the encysting cestode life stage found in intermediate hosts; “Metacercaria” is the encysting trematode life stage found in the second intermediate host; “Sporocyst” is the asexual cloning trematode life stage found in the first intermediate host.	unitless	stage
PARASITE_LIFE_CYCLE	The life cycle category of the parasite used in the analyses of Dykman et al. (2023). “Direct” means the parasite species uses one host species to complete its life cycle and “Indirect” means the parasite species uses more than one host species to complete its life cycle.	unitless	sample_descrip
LIFE_CYCLE_RATIONALE	Reasoning for the parasite life cycle assignment. Missing data identifier: NA (not applicable) or NR (not reported in original publication).	unitless	sample_descrip
LIFE_CYCLE_CITATION	Citation for the parasite life cycle assignment. If there was not enough information on the parasite’s taxonomy to make an educated life cycle assignment, the life cycle was assumed based on the most common life cycle in the higher parasite taxon, and this field is filled with “Assumed”.	unitless	reference_paper

Database

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Dataset: Parasite taxonomic and life cycle information