Dataset: Kelletia kelletii: DNA and RNA sequence
Data Citation:
White, C., Toonen, R. J., Christie, M., Davidson, J., Anderson, P., Daniels, B., Lee, A., López, C. (2024) Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-12-04 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.945292.1 [access date]
Terms of Use
This dataset is licensed under Creative Commons Attribution 4.0.
If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.
DOI:10.26008/1912/bco-dmo.945292.1
Spatial Extent: N:35.17 E:-119.57 S:34.25 W:-120.75
Cal Poly Pier, Avila Beach, CA 93424, USA (35.169800, -120.740800)
Temporal Extent: 2019 - 2020
Principal Investigator:
Crow White (California Polytechnic State University San Luis Obispo, Cal Poly (SLO))
Co-Principal Investigator:
Mark Christie (Purdue University)
Jean Davidson (California Polytechnic State University San Luis Obispo, Cal Poly (SLO))
Robert J. Toonen (University of Hawaiʻi at Mānoa, HIMB)
Scientist:
Paul Anderson (California Polytechnic State University San Luis Obispo, Cal Poly (SLO))
Benjamin Daniels (California Polytechnic State University San Luis Obispo, Cal Poly (SLO))
Andy Lee (Purdue University)
Cataixa López (University of Hawaiʻi at Mānoa, HIMB)
Contact:
Crow White (California Polytechnic State University San Luis Obispo, Cal Poly (SLO))
BCO-DMO Data Manager:
Karen Soenen (Woods Hole Oceanographic Institution, WHOI BCO-DMO)
Version:
1
Version Date:
2024-12-04
Restricted:
No
Validated:
Yes
Current State:
Final no updates expected
Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii
Abstract:
Understanding the genomic characteristics of non-model organisms can bridge research gaps between ecology and evolution. However, the lack of a reference genome and transcriptome for these species makes their study challenging. Here, we complete the first full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletii, a marine gastropod exhibiting a poleward range expansion coincident with climate change. We used a combination of Oxford Nanopore Technologies, PacBio, and Illumina sequencing platforms and integrated a set of bioinformatic pipelines to create the most complete and contiguous genome documented among the Buccinoidea superfamily to date. Genome validation revealed relatively high completeness with low missing metazoan Benchmarking Universal Single-Copy Orthologs (BUSCO) and an average coverage of ∼70x for all contigs. Genome annotation identified a large number of protein-coding genes similar to some other closely related species, suggesting the presence of a complex genome structure. Transcriptome assembly and analysis of individuals during their period of peak embryonic development revealed highly expressed genes associated with specific Gene Ontology (GO) terms and metabolic pathways, most notably lipid, carbohydrate, glycan, and phospholipid metabolism. We also identified numerous heat shock proteins (HSPs) in the transcriptome and genome that may be related to coping with thermal stress during the sessile life history stage. A robust reference genome and transcriptome for the non-model organism K. kelletii provide resources to enhance our understanding of its ecology and evolution and potential mechanisms of range expansion for marine species facing environmental changes.