BCO-DMO

Data File(s)	Type	Description	Action
999053_v1_diopatra-coi-haplotype.csv (10.39 KB)	Comma Separated Values (.csv)	Primary data file for dataset ID 999053, version 1. Includes metadata for COI sequences that were uploaded to GenBank.	999053_v1_diopatra-coi-haplotype.csv View Table

Files

Filename: 999053_v1_diopatra-coi-haplotype.csv (10.39 KB)
Type: Comma Separated Values (.csv)

Description:

Primary data file for dataset ID 999053, version 1. Includes metadata for COI sequences that were uploaded to GenBank.

999053_v1_diopatra-coi-haplotype.csv View Table

See the "Related Datasets" section for genotyped single nucleotide polymorphisms (SNPs) with RADseq that were also generated as part of this study.

IsRelatedTo

Dataset: Diopatra SNPs (SRA)
Relationship Description:

Data generated from the same study.

Sotka, E. (2026) Decorator worm Diopatra cuprea single nucleotide polymorphism (SNP) genotypes from collections in the Gulf of Mexico and eastern United States estuaries from 2009 to 2022. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2026-05-08 doi:10.26008/1912/bco-dmo.998297.1

IsRelatedTo

Dataset: https://www.ncbi.nlm.nih.gov/nuccore/OQ700161.1
Relationship Description:

One of 153 NCBI Genbank Accessions from this dataset. See all accessions in table 999053_v1_diopatra-coi-haplotype.csv.

Sotka,E., Bell,T. and Berke,S. (2023). Diopatra cuprea isolate MA.BA.15 cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial. NCBI:Genbank: OQ700161.1 [Internet] https://www.ncbi.nlm.nih.gov/nuccore/OQ700161.1

Software

Dataset: https://doi.org/10.5281/zenodo.18672658
Relationship Description:

Archive of the GitHub repository for analyses of Sotka et al. (2023) paper. This has all code and datasets for figures and analyses.

Erik Sotka. (2026). esotka/DiopatraCOI: DiopatraCOI (Version v1.0) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.18672658

Results

Sotka, E. E., Bell, T., & Berke, S. (2023). Cryptic mtDNA Diversity of Diopatra cuprea (Onuphidae, Annelida) in the Northwestern Atlantic Ocean. Biology, 12(4), 521. https://doi.org/10.3390/biology12040521

Results

Ziegler, A. J., Bell, T. M., Berke, S. K., Strand, A. E., & Sotka, E. E. (2025). Multiple cryptic lineages and restricted gene flow in the decorator worm Diopatra Cuprea. Marine Biology, 172(3). https://doi.org/10.1007/s00227-025-04613-8

Methods

Berke, S. K., Mahon, A. R., Lima, F. P., Halanych, K. M., Wethey, D. S., & Woodin, S. A. (2010). Range shifts and species diversity in marine ecosystem engineers: patterns and predictions for European sedimentary habitats. Global Ecology and Biogeography, 19(2), 223–232. Portico. https://doi.org/10.1111/j.1466-8238.2009.00509.x

Methods

Parchman, T. L., Gompert, Z., Mudge, J., Schilkey, F. D., Benkman, C. W., & Buerkle, C. A. (2012). Genome‐wide association genetics of an adaptive trait in lodgepole pine. Molecular Ecology, 21(12), 2991–3005. Portico. https://doi.org/10.1111/j.1365-294x.2012.05513.x

Data File(s)	Type	Description	Action
999053_v1_diopatra-coi-haplotype.csv (10.39 KB)	Comma Separated Values (.csv)	Primary data file for dataset ID 999053, version 1. Includes metadata for COI sequences that were uploaded to GenBank.	999053_v1_diopatra-coi-haplotype.csv View Table

Files

Filename: 999053_v1_diopatra-coi-haplotype.csv (10.39 KB)
Type: Comma Separated Values (.csv)

Description:

Primary data file for dataset ID 999053, version 1. Includes metadata for COI sequences that were uploaded to GenBank.

999053_v1_diopatra-coi-haplotype.csv View Table

See the "Related Datasets" section for genotyped single nucleotide polymorphisms (SNPs) with RADseq that were also generated as part of this study.

IsRelatedTo

Dataset: Diopatra SNPs (SRA)
Relationship Description:

Data generated from the same study.

IsRelatedTo

Dataset: https://www.ncbi.nlm.nih.gov/nuccore/OQ700161.1
Relationship Description:

One of 153 NCBI Genbank Accessions from this dataset. See all accessions in table 999053_v1_diopatra-coi-haplotype.csv.

Software

Dataset: https://doi.org/10.5281/zenodo.18672658
Relationship Description:

Archive of the GitHub repository for analyses of Sotka et al. (2023) paper. This has all code and datasets for figures and analyses.

Erik Sotka. (2026). esotka/DiopatraCOI: DiopatraCOI (Version v1.0) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.18672658

Results

Methods

Dataset: Decorator worm Diopatra cuprea mitochondrial locus (COI) sequences from collections in the Gulf of Mexico and eastern United States estuaries from 2009 to 2022

Principal Investigator: Erik Sotka (College of Charleston)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: The genetic legacy of an Asian oyster introduction and its disease-causing parasite (Oyster historical genetics)

Abstract

0

0

Files

Related Datasets

Related Publications

Dataset: Decorator worm Diopatra cuprea mitochondrial locus (COI) sequences from collections in the Gulf of Mexico and eastern United States estuaries from 2009 to 2022

Principal Investigator: Erik Sotka (College of Charleston)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: The genetic legacy of an Asian oyster introduction and its disease-causing parasite (Oyster historical genetics)

Abstract

0

0

Files

Related Datasets

Related Publications

Dataset: Decorator worm Diopatra cuprea mitochondrial locus (COI) sequences from collections in the Gulf of Mexico and eastern United States estuaries from 2009 to 2022

Principal Investigator: Erik Sotka (College of Charleston)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: The genetic legacy of an Asian oyster introduction and its disease-causing parasite (Oyster historical genetics)

Abstract

Metadata

0

0

Files

Related Datasets

Related Publications

Dataset: Decorator worm Diopatra cuprea mitochondrial locus (COI) sequences from collections in the Gulf of Mexico and eastern United States estuaries from 2009 to 2022

Principal Investigator: Erik Sotka (College of Charleston)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: The genetic legacy of an Asian oyster introduction and its disease-causing parasite (Oyster historical genetics)

Abstract

Metadata

0

0

Files

Related Datasets

Related Publications