| 16S and 18S rRNA gene amplicon sequence links and metadata from microbial mesocosms spiked with 2-heptyl-4-quinolone (HHQ) experiments, Bergen, Norway, May 2017 | Gene targeted during amplicon library construction
| amplicon |
| 16S microbiome metadata collected from shallow artificial reef sponges and seawater in the Florida Keys, USA from Apr 2021 to Aug 2021 | Type of source: environmental
| isolation_source |
| 16S microbiome metadata collected from shallow artificial reef sponges and seawater in the Florida Keys, USA from Apr 2021 to Aug 2021 | Description of sample type: tissue, incurrent (In), or excurrent (Ex) water
| sample_type |
| 16S microbiome metadata collected from shallow artificial reef sponges and seawater in the Florida Keys, USA from Apr 2021 to Aug 2021 | Number of times a sample had to be sequenced to obtain adequate data
| seq_attempt |
| 16S rRNA gene and particulate monooxygenase diversity from R/V Atlantis AT15-68, AT18-10, AT15-44, AT15-59 off Costa Rica and USA, Pacific Ocean, 2009-2011 (Authigenic Carbonate Ecosystems project) | type of material from which sequences were obtained
| sample_descrip |
| 16S rRNA gene (from DNA) from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010 | Sediment type
| Sediment_type |
| 16S rRNA gene (from RNA) from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010 | Illumina dataset ID
| Illumina_dataset |
| 16S rRNA gene (from RNA) from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010 | Type of nucleic acid amplified
| Nucleic_Acid_amplified |
| 16S rRNA gene (from RNA) from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010 | 16S rRNA primer set
| Primer_Set_16S_rRNA |
| 16S rRNA gene (from RNA) from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010 | Sediment type
| Sediment_type |
| GenBank accession numbers for microbial 16S rRNA sequences collected at the East Pacific Rise by DSV/Alvin during R/V Atlantis research cruises (Jan. 2004 - June 2006) (Microbial Communities at Deep-Sea Vents project) | sample description: either 16S tags or clones
| sample_descrip |
| 16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020 | Description of source of sample
| isolation_source |
| 16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020 | Organism descriptoin
| Organism |
| Octocoral colony heights measured during transect surveys at six sites on the south shore of St. John, US Virgin Islands during July and August of 2024 | From 0m to 9m. 1x1m quadrats were positioned randomly along the 10 m transect. The values refer to the position of the "shoreward" edge of the quadrat. Thus "0"refers to the quadrat placed between the 0 and 1 meter marks
| Meter_on_transect |
| Octocoral colony heights measured during transect surveys at six sites on the south shore of St. John, US Virgin Islands during July and August of 2024 | Side of the transect tape (Left or Right), orientation looking towards open ocean, with the nearest shore to the back.
| Side_of_transect |
| Field collection data for taxa detected in Copepod nauplii guts analyzed at San Francisco State University in 2013 (Food Limitation in Copepod nauplii project) | plankton tow type
| tow_description |
| Proportion of time the mangrove tree crab Aratus pisonii spent in different behaviors related to diet and energy storage (Cannizzo et al, (2018) Ecol & Evol.) | Color that crab was painted for identification during observations
| Crab |
| Abalone recruitment data from Baja California and Baja California Sur, Mexico in 2019 | Name of species observed in the survey
| Organism_Identification |
| Abalone recruitment data from Baja California and Baja California Sur, Mexico in 2019 | Any special note about the species
| Species_note |
| Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 | Refers to the size of the cryovial that the tissue or whole animal was frozen in
| container_size |
| Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 | Whether or not a photograph of the animal was take prior to dissection and/or freezing (Y or N)
| pics |
| Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 | Portion of an animal taken for isotope analysis if it was large (Y or N)
| Tissue_body_wall |
| Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 | Portion of an animal taken for isotope analysis if it was large (Y or N)
| Tissue_fin_clip |
| Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 | Portion of an animal taken for isotope analysis if it was large (Y or N)
| Tissue_gut_removed |
| Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 | Portion of an animal taken for isotope analysis if it was large (Y or N)
| Tissue_liver |
| Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 | Portion of an animal taken for isotope analysis if it was large (Y or N)
| Tissue_pereiopod |
| Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 | Portion of an animal taken for isotope analysis if it was large (Y or N)
| Tissue_pleopod |
| Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 | Portion of an animal taken for isotope analysis if it was large (Y or N)
| Tissue_white_muscle |
| Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 | Portion of an animal taken for isotope analysis if it was large (Y or N)
| Tissue_whole_body |
| Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 | A broad category of animal or sample type (e.g. gut contents)
| Type_of_organism |
| Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 | Either frozen, preserved in formalin, or preserved in ethanol
| whole_body_fate |
| Upper thermal limits (LD50) for two common coastal copepods during thermal experiments with individuals collected from Long Island Sound between July 2017 and November 2019 | whether copepods were acclimated to field- or laboratory conditions prior to thermal tolerance measurements.
| acclimation |
| Upper thermal limits (LD50) for two common coastal copepods during thermal experiments with individuals collected from Long Island Sound between July 2017 and November 2019 | the collection ID. For field-acclimated copepods this is the date of collection, while for laboratory-acclimated copepods this is the culture ID.
| collection_id |
| Acartia tonsa prosome length measurements in 2019 during a common garden split-brood experiment several generations after copepod collection in Long Island Sound in summer and fall of 2019 | the culture ID. Refers to the time period copepods were collected
| collection_id |
| Accession numbers for genetic sequences of virus-enriched field samples and P. carterae viruses from laboratory cultures at Bigelow Laboratory for Ocean Sciences, Maine from 2015-2016 | description of analysis
| analysis_method |
| Accession numbers for genetic sequences of virus-enriched field samples and P. carterae viruses from laboratory cultures at Bigelow Laboratory for Ocean Sciences, Maine from 2015-2016 | description of virus or metagenome sequenced
| organism_name |
| Accession numbers for genetic sequences of virus-enriched field samples and P. carterae viruses from laboratory cultures at Bigelow Laboratory for Ocean Sciences, Maine from 2015-2016 | description of sequence indicating type (ssDNA/dsDNA) and completeness of sequence (partial/complete)
| sequence_description |
| Accession numbers for genetic sequences of virus-enriched field samples and P. carterae viruses from laboratory cultures at Bigelow Laboratory for Ocean Sciences, Maine from 2015-2016 | Method of sequence generation (e.g. illumina MiSeq)
| sequencing_method |
| Pilot study with three unique genotypes of Acropora cervicornis coral to determine survival probability after exposure to temperature treatments at Mote Marine Laboratory in September and October 2019 | Ending coral color quantification based on color index
| End_Health_Index |
| Pilot study with three unique genotypes of Acropora cervicornis coral to determine survival probability after exposure to temperature treatments at Mote Marine Laboratory in September and October 2019 | Starting coral color quantification based on color index
| Start_Health_Index |
| Information about sequences of coral, Acropora cervicornis, collected from host colonies at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys in November and December 2019 | Source of genetic material ("METAGENOMIC")
| Library_Source |
| Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015 | Bleach status. Either Bleached or Apparently Healthy
| bleach_status |
| Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015 | Sequencing design description
| design |
| Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015 | Microsatellite genotype ID
| genotype |
| Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015 | Source of genetic material ("GENOMIC")
| library_source |
| Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015 | Type of library prep ("AMPLICON")
| library_strategy |
| Acropora cervicornis growth rates under different pH and temperature treatments from experiments at Summerland Key, Florida in September of 2016 | Genotype number of the coral animal for each fragment
| genotype |
| Acropora cervicornis growth rates under different pH and temperature treatments from experiments at Summerland Key, Florida in September of 2016 | Genotype number of the coral animal for each fragment
| Genotype |
| Acropora cervicornis photosynthesis and respiration rates under different pH and temperature treatments from experiments at Summerland Key, Florida in September of 2016 | Genotype number of the coral animal for each fragment
| genotype |
| Acropora cervicornis genomic/trancriptomic sequence accessions with associated data on tank exposure to white band disease and survival outcomes with corals collected from Florida, USA and Bocas del Toro, Panama in 2021 | Putative Genotype
| Genotype |
©2020 Biological and Chemical Oceanography Data Management Office.