16S and 18S rRNA gene amplicon sequences |
16S and 18S rRNA gene amplicon sequences |
HHQSignals |
amplicon |
16S rRNA gene and particulate monooxygenase diversity |
16S rRNA gene and particulate monooxygenase diversity |
Authigenic Carbonate Ecosystems |
sample_descrip |
16S rRNA gene from DNA |
16S rRNA gene (from DNA) |
Subvent_Biosphere_Sediments |
Sediment_type |
16S rRNA gene from RNA |
16S rRNA gene (from RNA) |
Subvent_Biosphere_Sediments |
Sediment_type, Nucleic_Acid_amplified, Primer_Set_16S_rRNA, Illumina_dataset |
16S rRNA sequence and collection data |
Microbial 16S rRNA sequence data from East Pacific Rise biofilms |
Microbial Communities at Deep-Sea Vents |
sample_descrip |
16S V4 rRNA gene tag sequences from reef seawater |
16S V4 rRNA gene tag sequences from reef seawater |
Quantitative coral microbiomes |
isolation_source, Organism |
5a_field collection |
Field collection data for taxa detected in nauplii guts |
food limitation in copepod nauplii |
tow_description |
A. pisonii: behavior |
A. pisonii behavior |
Variation in Metabolic Processes |
Crab |
Accession numbers (P. carterae viruses and field samples) |
Accession numbers for genetic sequences from virus-enriched field samples and P. carterae CCMP 645 culture co-infections |
Marine Chronic Viruses |
organism_name, sequencing_method, analysis_method, sequence_description |
Acer Pilot Study |
Acer short term pilot study with 3 genotypes |
Resilient Acerv |
End_Health_Index, Start_Health_Index |
Acropora cervicornis buoyant weight 2016 |
Growth rates of Acropora cervicornis |
Resilient Acerv |
genotype |
Acropora cervicornis calcification rates |
calcification rates of Acropora cervicornis |
Resilient Acerv |
Genotype |
Acropora cervicornis photosynthesis and respiration rates |
Photosynthesis and Respiration rates of Acropora cervicornis |
Resilient Acerv |
genotype |
Adaptation in fishing communities VTR 1997-2014 |
Changes in groundfish fishing communities in the northeast US from 1997-2014 from NOAA VTRs |
CC Fishery Adaptations |
size, still_extant |
Aggregation kin vs nonkin |
|
Marine kin structure |
Relatedness |
Alexandrium cell counts |
Alexandrium cell counts |
WHCOHH Algal Bloom Dynamics |
Sample_type |
Alvin Dive Log (preliminary) |
Preliminary log of samples collected during Alvin dives from R/V Atlantis cruise AT37-13 in the Costa Rica margin |
Costa Rica Seeps |
Photos, Sections_etc, Fate |
Amazon Plume Radium-2018 |
Radium isotope (223Ra, 224Ra, and 226Ra) measurements from CTD and underway water samples. |
Amazon River Plume Nitrogen |
U_or_C |
Amino acid d13C values of diatoms and bacteria |
Amino acid d13C values of diatoms, bacteria and core M772-003-2 samples |
Amino Acid Sediment 15N |
sample_description |
Anderson & Rynearson 2020: Skeletonema CHN |
CHN |
Phytoplankton Community Responses |
Strain |
Anderson & Rynearson 2020: Skeletonema thermal growth |
Anderson & Rynearson 2020: Skeletonema thermal growth |
Phytoplankton Community Responses |
Strain |
Aquaculture treatments |
Determining the effects of prey combination on larval Elacatinus colini standard length and survival. |
Elacatinus Dispersal II |
batch_id, combination, bin_id, surv |
Arctic Nitrogen Fixation Rates |
Size fractioned nitrogen fixation rates |
ArcticNITRO |
Size_fraction |
Assembled genome sequence for the virus ANMV-1 |
Assembled genome sequence for the virus ANMV-1 |
Viruses in Methanotrophic Marine Ecosystems |
Description |
Asteroid viral and bacterial metagenome genetic accession information |
|
Sea Star Microbiology |
Library_Name, Library_Description, Disease_State |
AT21-02: Jason dive event log |
Jason sample event log, cruise AT21-02, June 2012 |
SEEPC |
sample_descrip |
AT39-01 CathodicEET CyclicVoltametry |
|
North Pond 2017 |
Condition |
AT39-01 CathodicEET Experiment Metadata |
|
North Pond 2017 |
FLOCSsubstrate, Channel |
AT39-01 CathodicEET SEM |
|
North Pond 2017 |
FLOCSsubstrate |
AT39-01_FLOCS_SEM |
Scanning Electron Microscopy (SEM) photographs of biofilms and mineral alteration products |
North Pond 2017 |
RockType, DeploymentType |
Atlantic silverside (Menidia menidia) raw low-coverage genomic sequence accessions |
Accession numbers for raw low-coverage genomic sequence reads from 876 different Atlantic silverside individuals |
Fishery Genome Changes |
Breed |
Atlantic silverside metabolic rates |
CO2, temperature, and oxygen effects on Menidia menidia metabolic rates |
HYPOA |
stage |
Atlantic silverside RNA-seq reads |
|
GenomAdapt |
ecotype, dev_stage, sex, tissue, sample_type, cross |
AUV Sentry megafaunal presence |
|
Costa Rica Seeps |
Bacterial_Mat, Coral, Kiwa_puravida, dive_image_number, Carbonate_Rock, Tubeworm, Mussel, Serpulid, Clam |
Average polyp survival – Fall 2018 experiment |
Average Polyp Survival |
Host Symbiont Temp Response |
Initial_number, Genotype, Day, Container, Survivorship |
Azotobacter_SiderophoreConcentrations |
|
Bacteria Iron Siderophores |
Organism |
B12-Vehicle Dive Sample Log |
B12: Log: DIVE SAMPLES (Rock, Fluid, Biology) |
AXIAL |
Physical_Sample_Description |
bacterial_production |
Bacterial production in microcosm experiments. |
En-Gen DMSP Cycling |
microcosm_type |
Baltic Cod Summary |
Cod (Gadus morhua) otoliths from fisheries-dependent or fisheries-independent surveys from 1988-2017 in the Baltic Sea |
OtolithHypoxia |
Casini_Batch_or_Hypoxolith_Group |
Barnacle cover |
Central Galapagos subtidal temperatures |
SPONGERAPDGALPGS |
Quadrat_Number |
Barnacle percent cover |
Barnacle percent cover in rocky subtidal habitats |
RAPDGALPGS |
quadrat_num |
barnacle_mussel_survey |
Intertidal population surveys of mussels and barnacles along European coast (Spain, France) |
EUROWINTER |
sample_descrip |
BATS_Feb_Aug_2012_rDNA_sample_log |
sample log for 16S and 18S rDNA amplicons sequenced with 454 technology, BATS site, 2012 |
DimBio NABE |
water_mass |
Benthic cover quadrats and photos |
|
Reef Fish Resilience |
Image_nums |
Benthic foraminiferal abundances |
Benthic foraminiferal abundances from Mud Patch multicores |
OA, Hypoxia and Warming |
specimen_type |
Benthic Invertebrate Abundances associated with Octocoral Forests of St. John, US Virgin Islands |
|
St John Coral Reefs, Octocoral Community Dynamics |
Quadrat_ID, Quadrat_Num |
Benthic organism counts - 20m |
Benthic organism counts |
Hurricane impacts on deep reefs |
Zone, Transect, Quadrat, Meter, Group, Cover, Observer |
BioInformatics - MorrisJPR_HOOHgenes_2016 |
BioInformatics - MorrisJPR_HOOHgenes_2016 |
WP2 |
Description |
Biomass of sessile marine invertebrate communities with exposure to predation |
|
Competition and Predation across Latitude |
Sampling_interval |
Blade morphometrics |
|
Harvey Seagrass |
Sample_ID |
Bleaching Moorea 2019 |
Bleaching Moorea 2019 |
Pocilloporid Coral Diversity |
Bleaching |
Bleaching scores of introduced seaweed |
Palatability of non-native alga |
Genetic Adaptation Marine Inv |
assay, ind_type, pop, bleach_score |
BLOOFINZ-GoM flow cytometry abundance |
|
BLOOFINZ-IO |
CTD_Number |
Blue Crab Samples |
Blue Crab Samples |
Blue Crab Connectivity |
month_and_year, Permitting_info, Collection_method, Sample_size |
Bottle AR29 |
Bottle data April 2018 |
SPIROPA |
Filt_0, Filt_10 |
Bottle RB1904 |
Bottle dataset May 2019 |
SPIROPA |
Filt_0, Filt_10 |
Bottle TN368 |
Bottle data, July 2019 |
SPIROPA |
PPVial, Filt_0, Filt_10 |
Breviolum antillogorgium microsatellite loci |
Microsatellite loci for B. antillogorgium cultures |
Host Symbiont Temp Response |
Axenic |
Breviolum Symbiont Genotypes in Orbicella faveolata Adults |
|
SymBioSys |
B7Sym34, B7Sym36, CA_6_38, Assigned_Genotype, CP_type |
BrownOsenberg_2018- FlDyeSurvey |
Datasets that evaluate how vermetid (Ceraesignum maximum) modify physical and chemical conditions above coral-algal interactions (i.e., light, flow and oxygen). |
Vermetids_Corals |
net_presence, algae_presence |
BrownOsenberg_2018- InitO2_DBLthick |
Datasets that evaluate how vermetid (Ceraesignum maximum) modify physical and chemical conditions above coral-algal interactions (i.e., light, flow and oxygen). |
Vermetids_Corals |
surface, net_pres |
BrownOsenberg_2018- LightSensor |
Datasets that evaluate how vermetid (Ceraesignum maximum) modify physical and chemical conditions above coral-algal interactions (i.e., light, flow and oxygen). |
Vermetids_Corals |
Photonumber, NetCover |
Brown_et_al_2016 QuadratSurvey |
Data collected on the die off of vermetids in French Polynesia. |
Vermetids_Corals |
Verm_status, Net_presence |
Bugula neritina mesocosm symbiont titers |
Symbiont titers in B. neritina colonies grown under different conditions |
BiogeogDefensiveSymb |
Genotype, Colony |
C and N isotopes |
CN isotopes |
Coral DOM2 |
Ambient_or_Enriched |
Canopy Closure Data of the Octocoral Forests sampled for Light Intensity, St. John U.S. Virgin Islands |
|
Octocoral Community Dynamics, St John Coral Reefs |
Closure_Photo_ID, Proportion_closed |
Carbon Flux Explorer CCE_LTER P1706 - Imagery |
|
C-SNOW Development, CCE LTER, C-SNOW |
cleanflag, b_gain, flatflag_atn_images, cycle, g_gain, class_ATN, dive, r_gain, class_BCK, pressflag, therm, illum, cm_sec, iqual, exp_msec, diveimage_seq, flatflag_bck_images |
Carbon Flux Explorer CCE_LTER P1706 - Particulate Carbon Flux |
|
C-SNOW, C-SNOW Development, CCE LTER |
CCE_CYCLE |
Carbon Flux Explorer CCE_LTER P1706 - SOLO CTD Profiles |
|
CCE LTER, C-SNOW Development, C-SNOW |
dive, cycle, location, seq |
Carbon Geochemistry |
Carbon geochemistry of the Santa Elena (Costa Rica) ultramafics and bulk rock carbonate samples |
Controls on biological activity |
sample_group, sample_descrip |
Carbon Geochemistry Samples List |
Inventory of fluid and filter samples collected for carbon composition and isotope analysis |
Subseafloor Microbial Carbon Cycling |
Type_of_Sample_or_Treatment, storage_conditions |
Carbonate chemistry |
|
LTPE |
Sample_Temp |
Carbonate chemistry sample inventory |
Carbonate chemistry sample inventory |
Costa Rica Seeps |
Available_Live |
Caspase PAM data |
|
Coral Immune Traits |
MEMORY, PULSE |
Cell counts in polyps – Fall 2018 experiment |
Cell counts in coral polyps |
Host Symbiont Temp Response |
Container, Culture |
Cellular trace elements from IRNBRU and Line P |
Cellular trace elements from IRNBRU and Line P cruises |
Diatom Iron Storage |
CellType, Run |
Cellular trace elements from TN280 |
Cellular trace elements from TN280 |
GeoMICS Bio, GeoMICS Chem |
CellType, Run |
Cerro Mundo Algal Ash-Free Dry Weight |
Cerro Mundo Algal Ash-Free Dry Weight |
Temperature and Herbivory |
Algae_Type |
Chemistry and cell counts |
Chemistry and cell counts of formation fluids from North Pond |
North Pond Microbes |
description |
Chemosynthetic biofilm diversity |
Samples sequenced from chemosynthetic biofilm communities from deep-sea hydrothermal vents |
Microbial Communities at Deep-Sea Vents |
sample_description |
chlorophyll_a |
Chlorophyll-a concentration in microcosm experiments. |
En-Gen DMSP Cycling |
microcosm_type |
Closed Mesocosm 15N Tracer |
N2O, 15N2, 15N Sediment tracer in oyster mesocosms |
Oyster Reef N2O Emission |
Incubation |
Clownfish Photos |
|
Reef Fish Resilience |
tag_id, size, col, image_folder, fish_table_id, gen_id, color, unprocessed_images, tail_spread, tail_area, orange_area, color_disagreement, photo_color, Example_Photo |
Coccolith dissolution experiment |
|
OA_Copes_Coccoliths |
Replicate |
coccolithophore-associated biopolymers for radionuclides |
Recoveries and partition coefficients of Po, Pb and Be |
Biopolymers for radionuclides |
Biopolymer_Fraction |
Colony to colony interactions |
Data describing the types of interactions between colonies. |
VI Octocorals, St. John LTREB |
growth_asym |
Community |
|
Costa Rica Seeps |
Collected_in, Measured, Eggs_present, Isotopes_analyzed, Barcoded, Count |
Community 16S rRNA gene sequences |
16S rRNA accessions |
Vibrio-dust deposition |
sample_description |
Community composition separated by native and cryptogenic, and introduced species of each community |
|
Competition and Predation across Latitude |
Plate_ID, Species_status_type |
community_p_g |
|
OA coral adaptation |
incubation_number, community |
Composition of experimental marine invertebrate communities across latitude |
Composition of experimental marine invertebrate communities across latitude |
Competition and Predation across Latitude |
InvStatus |
Composition of marine invertebrate communities across latitude with exposure to predation |
|
Competition and Predation across Latitude |
InvStatus |
Copepod egg production |
Copepod egg production at low-high pCO2 levels |
OA-Copepod_PreyQual |
acclimated_or_not |
Copepod RNA-Seq sample information and accessions |
|
Neocalanus Gulf of Alaska |
Developmental_Stage |
coral - energy reserves |
Coral energy reserves; calcification, chlorophyll a, stable carbon isotopes, stable nitrogen isotopes |
repeat coral bleaching |
genotype |
Coral calcification rates |
Coral calcification rates |
RAPID Hawaii |
Colony_number, Nubbin_number |
Coral colony sequece accessions: Hidden resilience to recurrent bleaching |
|
Bleaching American Samoa |
bleaching_status |
Coral consumer and nutrients |
Data from Shaver et al. 2017 (Ecology) on the effects of nutrient enrichment and predation on coral health and microbiomes. |
small grazers facilitating fungal disease |
enrichment, mortality, tissueloss, genotype, predation |
Coral density - Palau |
|
Coral Reef Adjustment |
Morphology |
Coral growth |
Coral growth |
Climate_Coral_Larvae |
Arrangement |
coral growth 2016-2018 |
Height, surface area, and mass of Pocillopora damicornis in pacific Panama |
Coral Climate ETP |
GrowthPeriod |
Coral histology |
Histological analysis of Caribbean acroporid corals before and after exposure to thermal stress. |
Coral Hybridization |
Degeneration_Cnidoglandular_Bands, Bleaching, Dissociation_of_Mesenterial_Filaments, Colony_Bleaching_Distribution, Calicodermis_Condition, Tissue_Loss, Calicodermis_Repair, In_situ_Photo, Costal_Tissue_Loss, Gross_Photo_Fixed_Sample, Necrotic_Cell_Spherules, Piece_Number, Zooxanthellate_Ciliates, Number_of_Blocks_Made, Non_zooxanthellate_Ciliates, Fixation, Oocytes_Stage_in_Development, Enrobing, Decal, Spermaries_Stage_in_Development, Embed, Other_Stains, General_Condition_10x, Zooxanthellae_10x, Epidermal_Mucocytes_Condition, Study, Mesenterial_Filament_Mucocytes, Lesion_Description |
Coral physiological and δ15N isotopic measurements. |
Coral physiological and δ15N isotopic measurements |
OA_coral_physiology |
Genotype, CZAR, CHARTOC, CTAR, Treatment, Nutrient_Concentration |
Coral priority |
Coral priority experiment |
Coral-microbial interactions |
Genotype |
Coral pyrosequencing data |
Microbial communities of corals analyzed using 454 Illumina pyrosequencing |
Contagious coral diseases? |
measurement |
Coral reefs in the US Virgin Islands |
|
St John Coral Reefs |
Quadrat_Number |
Coral settlement |
|
Coral Chorus |
Cup_ID |
Coral species Information meta-analysis |
coral species info |
Coral Reef Adjustment |
MorphRvW |
Coral SSU rRNA gene database |
Coral SSU rRNA gene database |
Coral Microbial Relationships |
Accession_source, Length_bp, Organism_details, Host, Isolate_Clone |
Coral surveys |
Coral surveys |
Coral Reef Adjustment |
Species |
coral-microbe T-RF - development |
Specificity of associations between bacteria and the coral Pocillopora meandrina during early development |
MiCoDe |
description |
Core stress bands |
Stress bands in coral cores for corals from Palau reefs |
Thermal Thresholds and Projections |
stress_band_2010, stress_band_1998 |
Crassostrea virginica gonad MBD-BSseq |
GenBank metadata for Eastern oyster gonad methylation and OA |
Epigenetics to Ocean |
title, library_strategy, library_source, library_selection, library_layout, design_description |
Critical swimming speed |
Recorded critical swimming speed of larval Amphiprion percula, Elacatinus lori, and Elacatinus colini measured throughout development from hatching through settlement. |
Elacatinus Dispersal II |
clutch_id |
Cross Bay Demographics |
Demographic data for introduced crab from multiple bays 2009-2016 |
Invasive_predator_harvest |
gravid, injury |
Crustose coralline algae skeletal density |
Skeletal density for crustose coralline algae reared in natural and experimental temperature and pCO2 conditions |
CorallineAlgaePaleo-pH |
Location, Subsample |
Cryptic N: Seasonal STE Profiles |
Biogeochemical data from porewater profiles within a shallow, sandy subterranean estuary (STE). |
Subsurface cryptic N cycle |
Sampling_Campaign, Tidal_Stage_Location, Location |
Cryptophyte Cell Volumes |
|
Spectral Irradiance and Cryptophyte Biodiversity |
Strain |
CTD - Pump Seacat CTD - Down Casts |
CTD - Pump Seacat CTD - Down Casts |
SIRENA |
sampled_for |
CTD - Pump Seacat CTD - Up Casts |
CTD - Pump Seacat CTD - Up Casts |
SIRENA |
sampled_for |
CTD cast log for mussel study |
|
GOMEPRO |
Cast_data, Location_source, Start_GPS_horizontal_error, Start_GPS_vertical_error, Start_GPS_number_of_satellites, End_GPS_horizontal_error, End_GPS_vertical_error, End_GPS_number_of_satellites |
CTD hydrocast data |
CTD casts |
Chief Sci KM1910 |
ctd_direction |
CTD Profiles |
CTD Profiles - Binned Downcasts |
MuLTI |
location, dataset_description |
CTD Stations |
CTD Station Locations for Multiple Years |
MuLTI |
location, dataset_description |
ctenophore sample log |
Ctenophore observations collected during ROV dives |
DEEPC |
ConceptName, TapeTimeCode, SampleRefName |
Data from fish genotyped at 14 and 20 loci |
Data from fish genotyped at 14 and 20 loci at different life stages in the Belizean Barrier Reef in 2013. |
Elacatinus Dispersal I |
loci |
Deep-sea larvae for microbiome study |
Deep-sea larvae for microbiome study |
EPR Functional Diversity, Mariana Back-arc Vents, Metacommunity Dynamics |
Deployment_Fraction |
Densities of small corals in Diadema halos and temporal stability of D. antillarum clusters |
|
RUI-LTREB, Octocoral Community Dynamics |
PAC_cover, Cluster, Position, Quadrat, PAC |
Diatom Matrix RNAseq |
NCBI accessions |
Metabolic Currencies |
Description |
DICE_sequences |
Links to published dmdA, cDNA, and RNA sequences from the Dauphin Island Cubitainer Experiment (DICE). |
En-Gen DMSP Cycling |
descrip |
Diel Carbonate and Nutrient Chemistry |
Diel carbonate and nutrient chemistry |
Nearshore CO2 |
Community |
Diel proteomes Trichodesmium IMS101 |
|
MM Saito, MM Proteins and Organics Tech |
protein_name |
DISC: Deployment, environmental, and larval behavior information |
|
Elacatinus Dispersal II |
In_Behavior, Out_Behavior |
Dissolution kinetics of 10 marine calcifiers: Calcification rates |
|
CoralCalcifyFluid_pH |
Specimen, Scientific_name |
Dissolution kinetics of 10 marine calcifiers: Temperature and polymorph mineralogy |
|
CoralCalcifyFluid_pH |
Specimen, Scientific_name |
Dissolved oxygen |
|
Antarctic Shelf Sediments |
Profile |
DNA and cDNA (RNA) 18S V4 tag sequences from 5m and DCM |
|
SPOT |
instrument_model, design_description, filetype, sample_name, library_ID, title, library_strategy, library_source, library_selection, library_layout, platform |
DNA microsatellite alleles - Flowering shoots and seeds |
DNA microsatellite alleles from flowering shoots and seeds |
ZosMarLA |
type |
Dongsha Atoll Coral Calcification Rates |
Annual calcification rate time series of Porites corals on Dongsha Atoll |
Coral Reef Resilience |
status_July_2015, stress_bands |
Dongsha Atoll Ecological Survey Data |
Benthic photo-quadrat surveys on Dongsha Atoll |
Coral Reef Resilience |
status, species_or_substrate_type, survey_date |
Dose response evaluation of oyster shell strengthening in response to homarine and trigonelline |
|
Identifying molecules of fear |
Block, Pair, Tile |
Dose response evaluation of oyster shell strengthening to varying blue crab urine concentrations |
|
Identifying molecules of fear |
Pair |
Duquette et al. 2018: Mg/Ca ratios |
Mg/Ca ratios |
Antarctic Inverts, OA_Antarctic_organisms |
body_part, Sample |
Echinoid OA and stable isotopes: Echinoid calcification |
|
CoralCalcifyFluid_pH |
Treatment |
Eelgrass Traits |
eelgrass traits |
Genetic Div to Ecosys Functioning |
Geno |
Effects of vermetids on Pocillopora |
Effects of vermetids on Pocillopora growth and survival |
Vermetids_Corals |
paring, genotype |
Electrochemical Data GoM2017 |
Electrochemical data from sediments collected on R/V Savannah cruise SAV-17-15 in the Gulf of Mexico during July and August 2017 |
Soluble Fe Fluxing |
Collection_Type |
ELF field data |
NCBI accession numbers for raw RNA-seq fastq files derived from laboratory-maintained Trichodesmium erythraeum cultures |
TriCoLim |
colony_description, Tricho_filament_thickness, Tricho_filament_fluor, Tricho_filament_ELF_glow, ELF_reaction_results_plus_minus, backgrnd_speckling, backgrnd_speckling_filamaments, backgrnd_speckling_colonies |
ELF incubation |
ELF incubations |
TriCoLim |
colony_description, Tricho_filament_thickness, Tricho_filament_fluor, Tricho_filament_ELF_glow, ELF_reaction_results_plus_minus, backgrnd_speckling, backgrnd_speckling_filamaments, backgrnd_speckling_colonies |
EN584 LV incubation, peptidase and glucosidase activities |
Large volume incubation, peptidase and glucosidase activities (plate reader), EN584 |
Patterns of activities |
meso_no, substrate |
EN638 Bacterial Productivity |
|
Microbial DOC Degradation |
sample_type, unammended_ammended, substrate |
EN638 Bulk Cell Counts |
|
Microbial DOC Degradation |
sample_type, unammended_ammended |
EN638 Bulk FLA Rates |
|
Microbial DOC Degradation |
sample_type, unammended_ammended, substrate |
EN638 Bulk Plate Rates |
|
Microbial DOC Degradation |
substrate |
EN638 LV Plate Rates |
Substrate hydrolysis |
Microbial DOC Degradation |
sample_type, unammended_ammended, substrate |
EPR 9 North Plume Particles |
Bacterial 16S rRNA sequences from hydrothermal plume particles |
RESET06 |
description |
EPR 9N Inactive Sulfides |
Bacterial 16S rRNA sequences from inactive sulfide chimneys |
Bacwards |
description |
EPR vent colonists functional traits |
|
EPR Functional Diversity |
MAXIMUM_ADULT_BODY_SIZE, HABITAT_COMPLEXITY, TROPHIC_MODE, FEEDING_METHOD, RELATIVE_ADULT_MOBILITY, EXTERNAL_PROTECTION, LARVAL_DEVELOPMENT, REPRODUCTIVE_TYPE, FUNCTIONAL_GUILD |
ESP 2016 Seq |
Metagenomic, metatranscriptomic, and single cell sequencing data from the Fall 2016 ESP deployment in Monterey Bay, CA |
OceanSulfurFluxBact |
Type |
Etelis genetics |
|
Hawaiian Fish Origins |
Status |
Etelis morphology |
|
Hawaiian Fish Origins |
Prepelvic_length, Pelvic_fin_length, D_base, Spinous_D_base, Sample_Type, D_spine_1st, Standard_length, D_spine_2nd, Body_depth, D_ray_1st, Body_width, Longest_D_ray_last, Head_length, A_base, Snout_length, A_spine_2nd, Orbit_diameter, A_spine_3rd, Interorbital_width_fleshy, A_ray_1st, Upper_jaw_length, Longest_A_ray, Caudal_peduncular_depth, C_length_upper_lobe, Caudal_peduncular_length, C_concavity, Predorsal_length, Pectoral_fin_length, Preanal_length, Pelvic_fin_spine_length |
Etelis spp. rangewide genetic data |
|
Hawaiian Fish Origins |
Locus_Name |
ETNP ODZ Metagenomes April 2012 |
Assembled metagenomes collected in the Eastern Tropical North Pacific Oxygen Deficient Zone in April 2012 on TN278 |
EAGER Deep Prochlorococcus |
Sample_Processing |
ETNP Viral Morphology |
Morphotypes, capsid widths, and tail lengths of viruses from the ETNP |
OMZ Viruses |
Morphotype |
Eunicea flexuosa interactions |
Data from surveys of Eunicea flexusa colonies that were found in close proximity. |
VI Octocorals, St. John LTREB |
colonyEffect_0, colonyEffect_1, colonyEffect_2, colonyEffect_3, colonyEffect_4 |
Event logs: MCR10-1 and MCR11-1 |
Event log from MCR10-1 and MCR11-1 cruises/trips |
Coral DOM, MCR LTER |
sample_desig |
Exudate Uptake Incubations - Macronutrient Data |
Exudate Uptake Incubations - Macronutrient Data |
Coral Exometabolomes |
sample_type, LD, Incubation |
Exudate Uptake Incubations - Microbial Abundances (Flow Cytometry) |
Exudate Uptake Incubations - Microbial Abundances (Flow Cytometry) |
Coral Exometabolomes |
sample_type, Incubation, Light_conditions |
Fauna on restored oyster reefs |
Fauna on restored oyster reefs |
Seagrass and Oyster Ecosystems |
meas_descrip |
Fe, Pu partitioning and organic biopolymers |
Fe, Pu partitioning and organic biopolymers |
Biopolymers for radionuclides |
type, Biopolymer_fraction, Cell_type |
Feeding Trials |
Feeding trials using detritus from eelgrass (Zostera marina) genotypes (clones) as a food source and either one or a combination of invertebrate grazers |
Genetic Div to Ecosys Functioning |
Genotype |
FeOB oxygen consumption at 5C |
Oxygen consumption data for two iron oxidizing bacteria at 5˚C. |
SedimentaryIronCycle |
bact, Channel |
FeOB oxygen consumption pyrrhotite |
Experimental oxygen consumption data for two iron oxidizing bacteria with pyrrhotite as iron source.. |
SedimentaryIronCycle |
Channel, bact |
Field Physiochemical Parameters and Nitrogen Specific Uptake Rates |
Field Physiochemical Parameters and Nitrogen Specific Uptake Rates |
Creatine Cycling |
Water_Depth |
fluor_PAM |
Pulse Amplitude Modulation (PAM) fluorometry readings from microcosm experiments. |
En-Gen DMSP Cycling |
microcosm_type |
Fog water chemistry |
|
Mercury in Fog |
Sample_ID, Sample_type, Sample_type_2, Sample_location, Sample_vol |
Fossil Seal Bulk Isotopes 14C |
Location, weathering, bulk isotope, and 14C data for fossil seals from the western Ross Sea, Antarctica |
Southern Ocean Pinnipeds |
Carcass_erosion_stage, Bone_weathering_stage |
Fossil Seal Skeletal Measurements |
Skeletal measurements from fossil seals from the western Ross Sea, Antarctica |
Southern Ocean Pinnipeds |
Brief_description, Fusion_state_humerus_length_M1, Fusion_state_radius_length_M1, Fusion_state_ulna_length_M1, Fusion_state_pelvis_length_M1, Fusion_state_crista_ilium_breadth_M2, Fusion_state_femur_corpus_smallest_length_M9, Fusion_state_tibia_fibula_length_M3 |
Gene expression of Eurytemora affinis (saline and freshwater) |
|
Evolutionary genomics of a copepod |
Organism, Sex, Female_inbred_line, Male_inbred_line |
Geneflow Samples |
Brine samples were collected from both sea ice and cryopeg near Utqiaġvik, Alaska, USA. |
Arctic Subzero Brines |
Sample_type |
Geochemistry Summary |
Geochemistry summary data: IODP Expedition 337 single cell isotope incorporation of 1H, 2H, 12C14N, 12C15N, 12C12C, 12C13C ions |
Deep biosphere cell activity |
Horizon, Condition, Autoclaved, Amendment |
Gill 16S rRNA amplicon sequencing |
GenBank Short Read Archive (SRA) sequence accession numbers for 16S rRNA gene amplicon data from the gills of Alviniconcha species, Ifremeria nautilei, and Bathymodiolus septemdierum. |
Eco Dyn W Pacific Vents |
Collection_ID |
GN01 Aerosol Mercury |
Mercury and methylmercury concentrations in aerosols |
GEOTRACES Arctic Atmos Hg, U.S. GEOTRACES Arctic |
Sample_Group |
GN01 Particulate and Dissolved Po-210 and Pb-210 |
Particulate & dissolved Po-210 & Pb-210 in seawater, snow, melt ponds, ice core, ice-rafted sediments, and aerosols from Western and Central Arctic |
U.S. GEOTRACES Arctic, GEOTRACES Arctic 210Po and 210Pb |
data_type |
GN01 Sample logs |
Water sample logs from GEOTRACES-Arctic Section cruise HLY1502 (pdf) |
U.S. GEOTRACES Arctic |
sample_detail |
Goby parentage |
Data from 120 parent-offspring matches identified in fish on the Belizean Barrier Reef in 2013. |
Elacatinus Dispersal I |
direction |
GOMEPRO: ADCP Transects |
ADCP GoME, 2015-2016 |
GOMEPRO |
CTD_Stations, Tide |
GOMEPRO: CTD - Profiles |
CTD profiles |
GOMEPRO |
yymmdd |
Gorgonia ventalina asymmetry |
Data describing Gorgonia ventalina and interactions between individuals. |
VI Octocorals, St. John LTREB |
AsymSym |
GP15 Event Log |
Scientific sampling event log from the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15) from September to November 2018 |
U.S. GEOTRACES PMT |
samples_taken, GEOTRC_SAMPNO_Range |
GP16 Cruise Event Log |
Scientific Sampling Event Log |
U.S. GEOTRACES EPZT |
SAMPLES_TAKEN |
GP16 CTD - Cast Logs |
CTD - Cast Logs from TN303 cruise |
U.S. GEOTRACES EPZT |
SAMPLES_TAKEN |
GP16 CTD - Sample Logs |
CTD - Sample Logs from TN303 |
U.S. GEOTRACES EPZT |
SAMPLES_TAKEN |
GP16 GeoFish - Cast Logs |
GeoFish - Cast Logs from TN303 |
U.S. GEOTRACES EPZT |
SAMPLES_TAKEN |
GP16 PUMPs - Cast Logs |
PUMPs - Cast Logs from TN303 |
U.S. GEOTRACES EPZT |
SAMPLES_TAKEN |
GPS drifter tracks |
|
Reef Fish Resilience |
BatteryVoltage, CommId, GpsQuality, SamplingRate, SubmergedBoolean, DeviceName |
Grazing experiment 6: pCO2 with and without grazing by Coxliella |
Carbonate chemistry data |
E Hux Response to pCO2 |
description |
Grazing experiment 7: pCO2 with and without grazing by Gyrodinium |
Carbonate chemistry data |
E Hux Response to pCO2 |
description |
Groves Creek 'Omits |
Metagenomic, metatranscriptomics and 16S rRNA gene sequence data from Groves Creek diel sampling |
Marine priming effect |
Time_point |
Growth and physiology of Pocillopora damicornis: calcification |
|
Coral Resilience |
Origin, Coral_ID, Colony |
Growth and physiology of Pocillopora damicornis: coral physiology |
|
Coral Resilience |
Coral_ID, Colony |
Growth and physiology of Pocillopora damicornis: pHi |
|
Coral Resilience |
Coral_ID, Origin, Colony, Cell_type |
Growth rates of Line P diatoms in added Zn and Co incubation studies |
|
PMT Cobalt and Metalloenzymes, MM Saito |
Culture |
GT10 - Cruise Event Log |
GT10 - Scientific Sampling Event Log |
U.S. GEOTRACES NAT |
samples_taken |
GT11 - Cruise Event Log |
GT11 (KN204-01) scientific sampling event log. |
U.S. GEOTRACES NAT |
samples_taken |
Habitat restoration database |
Database of published habitat restoration studies from 1995, 2005, and 2015 |
Seagrass and Oyster Ecosystems |
Biodiversity_in_monitoring, Genetic_diversity, Species_diversity, Functional_diversity, Trophic_diversity, Empirical, Not_empirical, Ecosystem, Biodiversity, No_biodiversity, Biodiversity_in_design |
Haplotypes Moorea 2019 |
Haplotypes Moorea 2019 |
Pocilloporid Coral Diversity |
Mortality |
Hard Substrates Community Matrix, AT37-13 & AT42-03 |
Hard substrates matrix |
Costa Rica Seeps |
Site, Alvin_Dive, Habitat |
Hawaiian reef fish genetic accessions 2016 |
Genetic accessions at NCBI Genbank |
Hawaiian Fish Origins |
Sequence_Description |
Heatwave Experiment: Color Score Physiology |
Heatwave Experiment: Color Score Physiology |
Holobiont Integration |
Bleaching_Score |
Heatwave Experiment: Experiment Tank Conditions |
Heatwave Experiment: Experiment Tank Conditions |
Holobiont Integration |
PAR_Position, PAR_Measure_Type |
Heatwave Experiment: Multivariate Physiology |
Heatwave Experiment: Multivariate Physiology |
Holobiont Integration |
ANALYSIS |
Heatwave Experiment: Photosynthetic Irradiance |
Heatwave Experiment: Photosynthetic Irradiance |
Holobiont Integration |
Light_Level, Intercept, Chamber_Channel, Position, Bin_ID, Run, Sample_Type, Light_Dark |
Heatwave Experiment: Survivorship Probability |
Heatwave Experiment: Survivorship Probability |
Holobiont Integration |
Day_67, Day_83, Day_3, Day_99, Day_19, Day_35, Day_51, Day_68, Day_84, Day_4, Day_100, Day_20, Day_36, Day_52, Day_69, Day_85, Day_5, Day_101, Day_21, Day_37, Day_53, Day_70, Day_86, Day_6, Day_102, Day_22, Day_38, Day_54, Day_71, Day_87, Day_7, Day_103, Day_23, Day_39, Day_55, Day_72, Day_88, Day_8, Day_104, Day_24, Day_40, Day_56, Day_57, Day_73, Day_89, Day_9, Day_105, Day_25, Day_41, Day_58, Day_74, Day_90, Day_10, Day_106, Day_26, Day_42, Day_59, Day_75, Day_91, Day_11, Day_107, Day_27, Day_43, Day_60, Day_76, Day_92, Day_12, Day_108, Day_28, Day_44, Day_61, Day_77, Day_93, Day_13, Day_109, Day_29, Day_45, Day_62, Day_78, Day_94, Day_14, Day_110, Day_30, Day_46, Day_63, Day_79, Acclimation_End, Day_95, Day_15, Day_111, Day_31, Day_47, Day_64, Day_80, Day_0, Day_96, Day_16, Day_112, Day_32, Day_48, Day_65, Day_81, Day_1, Day_97, Day_17, Day_33, Day_49, Day_66, Day_82, Day_2, Day_98, Day_18, Day_34, Day_50 |
Herbivore exclusion experiment |
Data are from an herbivore exclusion experiment in a mangrove die-off area. |
Mangrove Die-off |
sampling |
Heterosigma akashiwo acclimation |
Heterosigma akashiwo acclimation - BioProject PRJNA377729 |
P-ExpEv |
sample_type, genotype |
Hydroacoustic Survey Data 2020 |
Hydroacoustics - Jupiter from August 31 until November 30, 2020 |
Storm effect on predator |
Collection_Mode, Frequency, Interval, Layer, Source |
Hydrothermal vent parasite species reported in published literature |
Literature review of deep-sea hydrothermal vent parasite, egg predator, and micropredator species |
EPR Functional Diversity |
PARASITE_CONSUMER_STRATEGY, HOST_TISSUE |
ICoMM GPS |
ICoMM GPS (Global Protistan Survery) Vent-related samples |
PROTISTS |
Sample_Description |
Illumina Sequences |
|
SedimentaryIronCycle |
description_of_the_types_of_sequences |
Imaging Pulse Amplitude Modulator Fluorometer Data 2016 |
Imaging Pulse Amplitude Modulator Fluorometer Data |
Resilient Acerv |
Genotype |
Impact of OA on coral (Siderastrea siderea) calcification and corallite morphology: Calcification rates |
|
CoralCalcifyFluid_pH |
Replicate, Colony |
Impact of OA on coral clumped isotopes |
|
CoralCalcifyFluid_pH |
Sample_ID, number_analyses |
In situ and ISCO data |
S-CAN and geochemical data for Groves Creek |
Marine priming effect |
time_point_type |
In-field and experimental measurements of environmental conditions: nutrients |
|
Coral Resilience |
Habitat, Tide, Dilution |
In-field and experimental measurements of environmental conditions: temperature |
|
Coral Resilience |
Origin |
In-situ pump data |
|
Are Traps Equal |
pore_size, volume |
In-situ temperature profiles |
Temperature Profiles |
HOTFUN |
Mats |
Incubation Data |
Results of incubation experiments |
DOM biomarkers |
site_type |
Infauna |
|
Harvey Seagrass |
Core_size, Subsample, Random_sample_section_number, Ratio |
Intertidal Transplant Mussels |
|
OMEGAS-MaS, OMEGAS-II |
Source |
IODP360 - CHNS analyses |
|
Subseafloor Lower Crust Microbiology |
Observations, Reference_Picture |
IODP360 - Drill fluid contamination testing |
|
Subseafloor Lower Crust Microbiology |
Tracer |
Isotopes d2H and d18O in natural waters of Alaska |
Isotopes d2H and d18O in Alaskan ground, lake, and river water |
Groundwater Discharge Methane |
water_type |
Isotopic Composition |
Description and isotopic composition of the carbonate deposits in the Santa Elena Ophiolite (Costa Rica) |
Controls on biological activity |
description, sample_powder |
IVARS Marine Snow profiles |
Profiles of the abundance and size distribution of marine snow aggregates |
IVARS |
Canister |
IVARS Phaeocystis |
Profile of the abundance and size distribution of abandoned (ghost) Phaeocystis colonines |
IVARS |
Canister |
Jason Dive Log - Loihi |
Log of Jason Dives from cruise TN293 at the Loihi Seamount in March 2013 |
Ecology of Vent Mats |
sample_details |
Jason-II sample log AT26-10 |
sample log from Jason-II dives for Sievert |
Microbial Communities at Deep-Sea Vents |
sample_description |
JTMD debris log |
Japanese Tsunami Marine Debris - biofouling debris log |
JTMD-BF |
sample_descrip |
Juan de Fuca Ridge Flank SSU rRNA gene sequences |
SSU rRNA gene sequences from marine sediments, marine subseafloor, and deep seawater |
microJdFR |
organism, description, sample_title, sample_name |
Juan de Fuca Viruses |
Single Amplified Virus Genome sequence accessions at NCBI |
Juan de Fuca Viruses |
Species_Name, Types_of_Sequences, Sequencing_method, Analysis_method, Organism, Description |
Juvenile oyster expt: recruitment |
Juvenile oyster expt: recruitment |
Oyster Reef Reversal |
recruit_substrate |
juv_fish_bycatch_redux |
Species counts from control and gear manipulation trials to reduce bycatch of juvenile fish. |
NEC_ProjDev |
sample_type |
kinetoplastid SSU rRNA seq. |
Microbial metatranscriptomics: upper and lower halocline water column |
Pickled Protists |
sample_descrip |
Kiritimati 2014-2015: Surface water |
Surface water quality samples |
RAPID Kiritimati |
field_season |
KOSMOS14 DMSPO Concentrations |
|
OA on DMS |
Mesocosm |
Krill Experiment - Experimental Conditions |
Laboratory krill experiments |
PelagicHypoxia |
Experiment, System |
Krill physiology - Experimental conditions |
|
PelagicHypoxia |
Type, System, Treatment |
Krill physiology - In situ conditions |
|
PelagicHypoxia |
Type |
Labyrinthulomycete genetic sequences |
samples around Long Island, NY for Labyrinthulomycete PCR and sequences |
LabyLI |
sediment_description |
larvae count |
Larval positioning in acrylic tubes describing the behavior of coral larvae in high pCO2 within shallow tropical reefs in Okinawa, Japan from 2016-07 to 2016-08 |
OA coral adaptation |
pcnt_at_top |
Larvae swimming data |
|
Larvae in turbulence |
track |
Larval fish identifications and concentrations |
Ichtyoplankton identifications and concentrations MOCNESS tows |
MEZCAL |
Season |
Larval oyster laboratory experiments |
Oyster larvae elemental ratio experiments |
EstuarineMetaDyn |
Sequence, Home |
Lau Basin Bacterial Low Temp Geomicrobiology |
Bacterial 16S rRNA sequences from seafloor rocks (silicates and sulfides) |
Lau Basin Geomicrobio |
description |
Length measurements |
Fish lengts sampled with MOCNESS in winter & summer 2018 & 2019 |
MEZCAL |
Season |
Light stress grazing: photosynthetic efficiency |
|
Protist signaling |
Num_Screens, Time_interval |
Light stress grazing: prey and predator exposure |
|
Protist signaling |
Num_Phytoplankton_Screens, Num_Micrograzer_Screens |
Light stress grazing: prey-only exposure |
|
Protist signaling |
Num_Screens |
Line P18 POM concentrations |
POM concentrations for carbon, nitrogen, phosphorus, and chemical oxygen demand |
Ocean Stoichiometry |
Volume |
LIS plankton |
|
Phytoplankton MeHg |
Sample_size_id, Sample_size |
Long-term diatom microbiome data and analysis package |
|
LTPE |
Organism, sample_title, Description |
Lost City AT42-01 Collected Fluids |
Samples collected and their associated temperatures on an expedition to the Lost City hydrothermal field |
Lost City Limits to Life |
Sample_Descrip |
Mariana Back-arc Macrofauna 2014 |
Macrofauna collected on colonization panels at Snail Vent Field on the Mariana Back-arc in 2014 |
Mariana Back-arc Vents |
occurrenceStatus |
Mark Recapture |
Mark recapture data for introduced crab in Seadrift Lagoon 2011-2018 |
Invasive_predator_harvest |
gravid, injury, recap_mark |
Marsh consumer diversity effects on multifunctionality |
The effect of consumer diversity on the ecosystem functioning of salt marshes. |
small grazers facilitating fungal disease |
treat, no_cons |
McKeon_et_al_2012 Multiple Defender Effects |
This dataset is part 1 of a 2 part manipulative experiment to investigate the existence of cooperative synergy in defensive behaviors of ‘guard’ crustaceans. |
CDD_in_Reef_Fish |
Location, PredDepth, Predation_Location |
McMurdo Sound acoustic backscatter krill and silverfish |
Acoustic backscatter from krill and silverfish in McMurdo Sound. |
McMurdo Predator Prey |
group |
McMurdo Sound acoustic backscatter site |
Acoustic backscatter from sites in McMurdo Sound. |
McMurdo Predator Prey |
Group |
McMurdo Sound sea ice movement dates |
Dates of sea ice movement in McMurdo Sound, Antarctica from MODIS and SSMI imagery |
McMurdo Predator Prey |
image_source |
Mesocosm Growth Data |
Size of Bugula neritina colonies with and without symbiont grown at different temperatures |
BiogeogDefensiveSymb |
genotype |
Mesocosm warming experiment quantitative PCR inhibition controls |
|
Seagrass and Oyster Ecosystems |
inhibition_sample_plate_id, inhibition_sample_well_id, inhibition_cntrl_ID |
Mesocosm warming experiment temperature |
|
Seagrass and Oyster Ecosystems |
bin |
Metabarcoding zooplankton at station ALOHA: NCBI SRA accession numbers |
NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample |
Plankton Population Genetics |
library_selection, library_layout, platform, design_description, analysis_name, title, library_strategy, library_source |
Metabarcoding zooplankton at station ALOHA: OTU tables and fasta files |
Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU |
Plankton Population Genetics |
analysis_description, analysis_name, assigned_habitat, NCBI_top_hit_title |
Metabolite Uptake Incubations - Microbial Abundances (Flow Cytometry) |
Metabolite Uptake Incubations - Microbial Abundances (Flow Cytometry) |
Coral Exometabolomes |
Filtration_type, Incubation |
Metagenome |
Metagenomic data |
Subvent_Biosphere_Sediments |
Sediment_type |
Metagenome of Bleached and Non-bleached corals |
|
Moorea Virus Project |
Description, Treatment |
Metal quotas of Line P diatoms in added Zn and Co incubation studies |
|
PMT Cobalt and Metalloenzymes, MM Saito |
Culture |
metatranscriptomics - upper_lower halocline |
Microbial metatranscriptomics: upper and lower halocline water column |
Pickled Protists |
sample_descrip |
Meteorological Data |
|
THMAO |
Pump3_Status, Pump1_Status, Pump2_Status |
Methane seep 16S rRNA sequences |
16S rRNA gene sequences of cells in marine methane seep sediments |
Cell-sorting and enrichment |
organism, collection_source |
Micro-satellite genotypes 2011 |
Microsatellite genotypes and geolocation data from Curlew Caye |
Elacatinus Dispersal I |
offspring_parent |
Microbe priority experiment counts |
Microbe priority experiment counts (OTU counts) |
Coral-microbial interactions |
genotype |
Microbial 16S rRNA gene amplicon SRA numbers |
Microbial 16S rRNA gene amplicon SRA numbers |
DeepCCZ |
Isolation_Source |
Microbial community composition McMurdo Spiophanes beds |
McMurdo Spiophanes beds 16s V4 region community composition |
McMurdo Benthos |
organism, host |
Microbial community composition of the Cinder Cones Cold Seep |
Microbial community composition of the Cinder Cones Cold Seep |
Cinder Cone Seep |
organism |
Microbial eukaryotic diversity: Axial Seamount SRA |
Axial seamount SRA |
Microbial eukaryotes at hydrothermal vents |
description, organism, isolation_source, title, library_strategy, library_source, library_selection, library_layout, platform, design_description |
Microbial eukaryotic diversity: Gorda Ridge SRA |
Gorda Ridge SRA |
Microbial eukaryotes at hydrothermal vents |
title, library_strategy, library_source, library_selection, library_layout, platform, design_description, sample_name, organism, isolation_source, bacterial_or_eukaryotic_community, Grazing_experiment_or_in_situ |
Microbial eukaryotic focused metatranscriptome data |
|
SPOT |
title, sample_name, library_strategy, library_source, library_selection, library_layout, platform, instrument_model, design_description, filetype, library_ID |
Microbial isolates |
Microbial isolates from sediment samples collected at Paleochori Bay, Milos island, Greece |
Hydrothermal Autotrophic Carbon Fixation |
sample_origin |
microcosm_summary |
Summary of microcosm data from Dauphin Island Cubitainer Experiment (DICE). |
En-Gen DMSP Cycling |
microcosm_type |
Micronekton AA CSIA ALOHA: Amino acid specific isotopes in micronekton |
Amino acid specific isotopes in micronekton, station ALOHA |
Hg_Biogeochemistry |
Tissue_Type |
Minor Ion Concentrations |
|
North Pond 2017 |
Borehole_type_coil, Sample_number |
Mixotrophic nanoflagellate abundances |
|
Giant virus ecology |
Method, Group, Environment, Position |
Modern deep-sea coral (Desmophyllum dianthus) nitrogen isotopes |
Deep-sea coral (Desmophyllum dianthus) nitrogen isotope data |
DeepSeaCoralNitrogen |
catalog_num, source, year_collected |
Monthly Trapping |
Demographic data from introduced crab in Seadrift Lagoon 2009-2019 |
Invasive_predator_harvest |
gravid, injury, recap_mark |
Mortality Moorea 2019 |
Mortality Moorea 2019 |
Pocilloporid Coral Diversity |
Mortality, Partial_colony_mortality |
mRNA sequencing - RNAseq |
mRNA sequencing - RNAseq |
OA pH, Temp, Calc Inverts |
Description, Sequencing_and_Analysis_Methods |
MRP sediments with pretreatment |
|
Marine Sediment Analysis 31P NMR |
Extract, Step, Analyte_Name, blank_corrected |
MRP sediments with pretreatment |
|
Deep sea sediments |
Extract, Step, Analyte_Name, Blank_corrected |
Multitracers Biogenic Concentration Data |
Multitracers Biogenic Concentration Data |
Multitracers Paleoproductivity, Biogenic Chemical Records, Multitracers II, Multitracers Sediment Traps |
Sample_Description |
Multitracers Metal Concentration Data |
Multitracers Metal Concentration Data |
Ag Flux and Export Productivity |
Sample_Description |
Mussel dataset |
|
Costa Rica Seeps |
Collected_in |
Mytilus Elemental Fingerprints |
|
MuLTI-2, GOMEPRO |
Age |
NanoSIMS HCN - All Data |
IODP Expedition 337 single cell isotope incorporation of 1H, 2H, 12C14N, 12C15N. 12C12C, 12C13C ions |
Deep biosphere cell activity |
Condition, Morph, ROI |
Nearest neighbor surveys |
Data describing the nearest neighbor of sampled individuals. |
VI Octocorals, St. John LTREB |
visibleInhibition |
Nitrogen Isotope Ratios in Amino Acid Standards and Samples |
Nitrogen Isotope Ratios in Amino Acid Standards and Samples |
Amino Acids N Isotopes |
Fraction |
Nutrient monitoring |
|
High latitude kelp dynamics |
Sample_type, Distance_from_bed_m |
Ocean Acidification Experiment: Phenotypic responses of Eastern oyster |
Ocean Acidification Experiment: Phenotypic Measurements |
Epigenetics to Ocean |
ID, Exposure_Extra, shelf, pop |
Ocean Acidification Experiment: Water Quality |
Ocean Acidification Experiment: Water Quality |
Epigenetics to Ocean |
Shelf, Experimental_Cat, Exp_Temp |
Ocean Crust Microbiome Amplicon Metadata |
Metadata for sequence datasets used in ocean crust microbiome survey |
Slow Life in Crust |
Temp, Depth, region16S, SRA_LibraryName, Sample_Type |
Octocoral Forest Composition and Canopy Parameters used in Benthic Community Analysis, St. John U.S. Virgin Islands |
|
Octocoral Community Dynamics, St John Coral Reefs |
Quadrat_Num, Quadrat_ID |
Octocoral Sensus Data for Light Quadrats at Yawzi Point and East Cabritte sites in St. John, U.S. Virgin Islands |
|
Octocoral Community Dynamics, St John Coral Reefs |
Canopy_State, Quadrat_ID |
Oikopleura dioica feeding behavior particle tracking |
Oikopleura dioica feeding behavior particle tracking |
Mucus net filter feeders |
Location, Video, Frame |
Oyster Cohort Traits |
Performance traits (e.g., survival, growth, size) for hatchery-produced oyster cohorts |
Seagrass and Oyster Ecosystems |
Eff_allelic_diversity, Allelic_richness, Genetic_relatedness |
Oyster Extrapallial Fluid |
Data collected on the carbonate system of the oyster extrapallial fluid |
Epigenetics to Ocean |
shelf |
Oyster genetic identity and parasite community structure |
Oyster genetic identity and parasite community structure |
Seagrass and Oyster Ecosystems |
Seed_Source |
Oyster mortality |
|
Seagrass and Oyster Ecosystems |
Plate_density, Cage_mesh_size, Oyster_size_treatment, Individual_oyster_size, Individual_mortality, Mode_of_mortality |
Oyster reef survey totals |
Survey totals |
Oyster Reef Reversal |
processed |
Oyster shell strengthening in response to blue crab predator cues |
|
Identifying molecules of fear |
pair, tile, life_status, block |
Oyster spat elemental ratios |
Elemental ratio data from Mass Spec analysis of newly settled oyster spat |
EstuarineMetaDyn |
Burn_Number |
P. homomalla development (coarse) |
|
Octocoral Community Dynamics |
container |
Palau Coral Stress Band Data |
Palau Coral Stress Band Data |
Biophysics of Coral Reef Resilience |
Cohort, SB_98, SB_10 |
Palau lakes: tissue archive |
Palau lakes: tissue archive |
PaPaPro |
Instant_Field_ID |
Parasite taxonomic and life cycle information |
Literature review metazoan parasite species |
EPR Functional Diversity |
HOST_GROUP_COMMON_NAME_SIMPLE, EXCLUDED_FROM_ANAYSES, RATIONALE_FOR_EXCLUSION, PARASITE_LIFE_CYCLE, LIFE_CYCLE_RATIONALE |
Particle Genomes |
16S rRNA and genomes of particle associated taxa |
MINTPOM |
type, type_of_sample |
Particles and Zooplankton AA-CSIA |
Particles and Zooplankton Amino Acid Compound Specific Isotope Analyses (AA-CSIA) and zooplankton biomass in the Equatorial North Pacific and station Aloha |
Hg_Biogeochemistry, SuspendSinkPart |
Type |
PaV1 Den Tethering |
Tethered PaV1 infected juvenile lobsters introduced to occupied wild dens |
Lobster disease connectivity |
den_type |
percent cover CPCE |
Percent cover of coral in pacific Panama using the coral point count method |
Coral Climate ETP |
MeanHealth |
percent cover PI |
Percent cover of coral in pacific Panama using the coral point count method |
Coral Climate ETP |
MeanHealth |
Permafrost Brine Geochemistry in the Barrow Permafrost Tunnel |
Permafrost Borehole Geochemistry in the Barrow Permafrost Tunnel |
Arctic Subzero Brines |
Material, Type |
pH, dissolved oxygen, temperature, and salinity from seaphox |
pH, temperature, salinity, and dissolved oxygen values from seaphox sensors |
Coral Calcification Physiology |
Deployment |
phase1_elevated_pCO2 |
|
OA coral adaptation |
Flume, Chamber, day_night |
phase2_elevated_pCO2_NO3 |
|
OA coral adaptation |
Flume, Chamber, day_night |
Phillips_et_al_2014 - Settlement to Quadrats |
Settlement of Ceraesignum (previoulsy Dendropoma) maximum to plots where the amount of live coral is manipulated (50% scarred or unmanipulated) |
Vermetids_Corals |
reef_type |
Phillips_et_al_2014 - Settlement to Rubble |
Settlement of Ceraesignum (previoulsy Dendropoma) maximum to rubble within plots where the amount of live coral is manipulated (50% scarred or unmanipulated) |
Vermetids_Corals |
Reef_type |
Picocyanobacteria Sinking Aggregates: Abundances |
|
Marine Plankton Aggregation |
Culture |
Picocyanobacteria Sinking Aggregates: Excess Densities |
|
Marine Plankton Aggregation |
Culture |
Picocyanobacteria Sinking Aggregates: Sinking Velocities |
|
Marine Plankton Aggregation |
Culture |
Picocyanobacteria Sinking Aggregates: Sizes |
|
Marine Plankton Aggregation |
Culture |
Picocyanobacteria TEP: Cell Abundance |
|
Marine Plankton Aggregation |
Culture |
Picocyanobacteria TEP: Growth Rates |
|
Marine Plankton Aggregation |
Days_min, Days_max, Culture |
Picocyanobacteria TEP: Suspended Aggregates |
|
Marine Plankton Aggregation |
Culture, Suspended_Aggregate_Volume_Concentration_rep1, Suspended_Aggregate_Volume_Concentration_rep2 |
Picocyanobacteria TEP: TEP Concentration |
|
Marine Plankton Aggregation |
Culture |
Pleurochrysis carterae virus production |
Analysis of temporal dynamics of three virus types (ssDNA PcCV, dsDNA PLV, dsDNA PsEV) persistently co-infecting P. carterae CCMP645 |
Marine Chronic Viruses |
media |
Pocillopora sequences from 2019 |
|
Pocilloporid Coral Diversity |
dev_stage, Tissue, Assay_Type, AvgSpotLen, Bases, BioSampleModel, DATASTORE_filetype, Isolation_Source, Library_Name, LibraryLayout, LibrarySelection, LibrarySource, mtORF_haplotype, Platform, Isolate |
Poland_2013: Polyp count by symbiont type summary |
Polyp count by symbiont type summary |
SymBioSys |
cptype |
Poland_2013: Symbiont types by site and month |
Symbiont types by site and month |
SymBioSys |
cptype |
pooled random sites (PRS) |
Coral community structure at pooled random sites between Cabritte Horn and White Point in St. John before and after five hurricanes from 1988–2017 |
RUI-LTREB |
Timing |
Pooled sequencing data from field-collected Eurytemora affinis |
|
Evolutionary genomics of a copepod |
Origin |
Pore Water Depth Profiles GoM2017 |
Sediment pore water and solid phase geochemical analyses from samples collected on R/V Savannah cruise SAV-17-15 in the Gulf of Mexico during July and August 2017 |
Soluble Fe Fluxing |
Collection_Type |
Pore water geochemistry |
|
Antarctic Shelf Sediments |
Samp, Error |
Porewater Composition |
Biogeochemical and sediment characteristics of the Cinder Cones Methane seep site |
Cinder Cone Seep |
sampling_approach |
Porites asteroides and Diploria labyrinthiformis calcification |
|
BEACON |
Wt_label |
Porites astreoides Photosynthetic Induction and Octocoral Community St. Johh U.S. Virgin Islands |
|
Octocoral Community Dynamics, St John Coral Reefs |
Canopy_Closure_above_P_astreoides |
Porites astreoides Photosynthetic Induction PAM data, St. Johh U.S. Virgin Islands |
|
Octocoral Community Dynamics, St John Coral Reefs |
Coral_Num |
Predator effects on settlement |
|
BiodiversityLossEffects_lionfish |
EXPT |
Presence and absence of iron and light-related functional genes |
Protein information obtained from samples collected on LMG1411. |
Polar_Transcriptomes |
description |
Primary producer amino acid nitrogen isotope data meta-analysis |
Published primary producer amino acid nitrogen isotope values to examine beta variability in trophic position estimates |
GoME Copepod Coral Export |
Vascularization |
Prochlorococcus and Synechococcus nitrite accumulation in batch culture |
Prochlorococcus and Synechococcus nitrite accumulation in batch culture |
Prochlorococcus N assimilation |
Type |
Profile data |
|
N2O in ETNP |
Events_Notes, Log_Taker |
Prokaryotic and eukaryotic abundance in BATS microbial communities |
|
Marine Plankton Aggregation |
prokaryotic_or_eukaryotic, Taxonomy, sample_type, season, sample_group |
Proportion infected polyps – Fall 2018 experiment |
Infected polyps |
Host Symbiont Temp Response |
Genotype, Container, Day, Proportion_infected, Percent_infected |
Pro_ancestor |
Clones of Prochlorococcus MIT9312 and link to BioProject |
P-ExpEv |
sample_title |
Pteropod abundance and distribution |
|
Gulf of Maine Pteropods |
split |
Pump mesozooplankton samples |
Analysis of mesozooplankton from pump samples |
GoMX - NGOMEX |
splits, beaker |
Push Core Faunal & Environmental Characteristics |
|
Costa Rica Seeps |
Activity_category, Species_richness, Taxonomic_diversity_Shannon, Taxonomic_evenness_Pielou, Functional_richness, Functional_diversity_Shannon, Functional_evenness_Pielou, Faunal_density, Average_body_size |
Pyrosome Gut Pigment Contents |
Pyrosome Gut Pigment Contents |
NCC Pyrosomes |
Sub_Whole, Sub_Prop |
Quadrat counts |
|
PoGOMO |
Tube_Number |
radionuclide uptake by humic acids |
The uptake and binding of six particle-reactive and/or redox-sensitive radionuclides (210Pb, 234Th, 7Be, 59Fe, 237Np and 233Pa) with different organic functionalities of three size fractions. |
Biopolymers for radionuclides |
HA_ID, Soil_Order |
Reciprocal transplant expt. - PSII of random colonies |
PSII random colonies |
Varadero Reef |
Type |
Reciprocal transplant expt. - PSII of transplanted corals |
PSII coral transplants |
Varadero Reef |
Type, Tag_color |
Reciprocal transplants |
Reciprocal transplant experiments on Palau Porites coral |
Coral Reef Ecosystem OA Impact |
status |
Recoveries and partition coefficients |
Recoveries and partition coefficients of Po, Pb and Be |
Biopolymers for radionuclides |
System, Organic_nanoparticle, Inorganic_nanoparticle |
Reef biogeochemistry, metabolomics, and metagenomics |
Reef biogeochemistry, metabolomics, and metagenomics |
Coral Exometabolomes |
analysis_type, sample_type, healthbinary, sworcoral, healthlong |
Reef Fish Genetic Accessions 2019 |
Hawaiian Reef Fish Genetic Accessions |
Hawaiian Fish Origins |
Sequence_Description, Sequence_Analysis_Method |
Results of risk-addition experiment (adult oyster condition index) |
|
Predatory NCEs and Scale |
position |
Results of risk-addition experiment (juvenile oyster condition index) |
|
Predatory NCEs and Scale |
position |
Richness of experimental marine invertebrate communities across latitude |
|
Competition and Predation across Latitude |
InvStatus |
Richness of marine invertebrate communities across latitude with exposure to predation |
|
Competition and Predation across Latitude |
InvStatus |
RNA sequence accessions at NCBI |
|
Kleptoplasty |
sample_type, culture_collection, Library_Name, Sample_Name, Assay_Type, LibrarySelection, Organism, isolate |
Robomussel Temperature |
|
OMEGAS-MaS, OMEGAS-II |
Source |
Rockfish hypoxia experiments |
Data from experiments testing the effects of hypoxia on behavior and physiology of two species of rockfish |
OA Hypoxia Rockfish |
Relative_Lateralization_Score, Absolute_Lateralization_Score |
Ross Sea metaproteome peptide spectral counts |
|
CORSACS |
plus2H_spectra_count, plus3H_spectra_count, plus4H_spectra_count, peptide_start_index, peptide_stop_index, other_protein_ids, best_protein_id_probability, best_sequest_DCn_score, best_sequest_Xcorr_score |
Ross Sea metaproteome protein spectral counts |
|
CORSACS |
protein_name, kegg_description, kegg_pathway, other_identified_proteins |
ROV Dive Log (Wood Fall project) |
Provides information for all dives with the remotely operated vehicle. |
Wood Fall |
cores, video_transects, megafauna_collections, elevator, notes, transponder_deployed, transponder_address |
Ruiz-Cooly 2014 - Sperm whale sample info |
Sperm whale skin tissue samples information |
Sperm Whale SI Ratios |
source |
Salinity Effects on Oyster Spat Growth: Hatchery Spat |
|
SeaGo |
Spat_Type |
Salinity tolerance without acclimation: Water Quality |
oyster spat mortality salinity experiment |
Oyster adaptation |
Source, Heater_Adjusted, F_W_added, Water_Change, Qty_Fed |
Salp Gut Particle Sizes |
Salp Gut Particle Sizes |
Salp Food Web Ecology |
PartType |
Salt marsh carbonate and organic carbon chemistry 2016 |
Discrete bottle sample measurements for carbonate chemistry, organic alkalinity and organic carbon from samples collected in Waquoit Bay and Vineyard Sound, MA in 2016. |
Salt Marsh Paradox |
sample_descrip |
Salt Marsh Water Exchange-Cores |
|
Salt Marsh Water Exchange |
Core_condition_Observations |
Salt Marsh Water Exchange-Water |
|
Salt Marsh Water Exchange |
Sample_Type |
Sample Accession Numbers |
Project accession and library information on each experimental sample |
Upwelled Phytoplankton Dynamics |
title, design_description, filetype |
Sample log |
Metadata from sediment samples collected at Paleochori Bay, Milos island, Greece |
Hydrothermal Autotrophic Carbon Fixation |
sample_description |
Sample Metadata for MOCNESS Tows |
Sample Metadata for MOCNESS Tows |
Chief Sci KM1910 |
Bulk_fraction, Size_fraction, Size_fraction_min, Size_fraction_max |
SAR11_DOM_GIO15: AE1516 sample log |
Experimental and Survey of Biogeochemical and Microbial Data; SAR11 DOM Oxidation |
Bacterial DOC cycling |
sample_descrip |
Sargasso Sea Hydrocarbons |
|
Cyanobacteria Hydrocarbons |
id |
SCCS Diazotroph Abundances |
|
BSUCS |
UCYN_A1_DNQ, UCYN_A2_DNQ, UCYN_B_DNQ, Tricho_DNQ, Het_2_DNQ, g_24774A11_DNQ |
Sciaenid egg identification |
|
Egg Boon Food Webs |
Red_Drum, Gulf_Kingfish, Southern_Kingfish, Spotted_Seatrout, Atlantic_Croaker, Black_Drum |
SCTLD rapid microbiome characterization |
SCTLD microbiome |
Multi-Species Coral Disease |
Sample_type, SCTLD_status, Disease_Sample_Type, Lesion_Distribution, Lesion_Start, Lesion_Margin, Disease_Colony_Sample_Distance_cm, Coral_Clade |
Sea star specimen information: California Academy of Sciences |
Sea star specimen information from the California Academy of Sciences |
Sea Star Microbiology |
CollectMethod, Collector, CollDateText, CatNum, AccNum, AccAcro, Author, CollName, CollDate, Identifier, IdDate, OrigFix, Preservative, Photos, FieldNum, NumSpecimens |
Sea star specimen information: LA County Museum of Natural History |
Sea star specimen information from the LA County Museum of Natural History |
Sea Star Microbiology |
location_in_collection, LACM_num, collection |
Sediment cores (Wood Fall project) |
Dataset provides information for macrofaunal cores taken with a remotely operated vehicle. |
Wood Fall |
core_no, sorter, core_type, core_id, group_number |
Sediment iron |
|
Antarctic Shelf Sediments |
error |
Sediment porosity |
|
Antarctic Shelf Sediments |
Error |
Sediment trap fluxes |
|
Are Traps Equal |
collector, replicates |
Seep Sediment Metagenome ANM1 - Genbank BioSample SAMN00215736 |
Seep Sediment Metagenome ANM1 |
Viruses in Methanotrophic Marine Ecosystems |
Description |
SEEPC Bivalve DNA Barcoding Results |
Bivalve larvae DNA barcode results |
SEEPC |
larval_type |
sequence accession numbers |
GenBank accession numbers for sequences from deep-sea protobranch bivalves. |
Ev Deep Sea Molluscs II |
description |
sequence accessions |
Accession numbers for sequences generated from hydrothermal plume samples. |
Guaymas plumes |
description |
Sequence accessions: archaeal and bacterial clone libraries |
Sequence accession numbers for archaeal and bacterial clone libraries from Guaymas Basin sediments |
Microbial Biogeo Guaymas |
sequence_type |
Sequencing Reads |
Accession numbers |
KeysCoralPopgen |
Isolate, coral_type, transect |
Series 1B: cell size and abundance |
Series 1B: cell size, abundance |
Stressors on Marine Phytoplankton |
Phase |
Series 1B: pH, DIC, nutrients |
Series 1B: pH, DIC, nuts |
Stressors on Marine Phytoplankton |
Phase |
Series 1B: photophysiology - computed |
Series 1B: photophysiology |
Stressors on Marine Phytoplankton |
Phase |
Series 1B: POC, PON, Chl-a |
Series 1B: POC, PON, Chl-a |
Stressors on Marine Phytoplankton |
Phase |
Series 2A: cell size and abundance |
Series 2A: cell size, abundance |
Stressors on Marine Phytoplankton |
Phase |
Series 2A: photophysiology - computed |
Series 2A: photophysiology |
Stressors on Marine Phytoplankton |
Phase |
Series 2A: POC, PON, Chl-a |
Series 2A: POC, PON, Chl-a |
Stressors on Marine Phytoplankton |
Phase |
Series 3: Skeletonema marinoi growth and aggregation - Aggregation Phase |
Series 3: Skeletonema marinoi growth and aggregation - Aggregation Phase |
OA - Ocean Acidification and Aggregation |
Tank |
Series 3: Skeletonema marinoi growth and aggregation - Cell Growth Phase |
Series 3: Skeletonema marinoi growth and aggregation - Cell Growth Phase |
OA - Ocean Acidification and Aggregation |
Bag |
Series 3A: cell abundance |
Series 3A: cell abundance |
Stressors on Marine Phytoplankton |
Phase |
Series 3A: cell size |
Series 3A: cell size |
Stressors on Marine Phytoplankton |
Phase |
Series 3A: DIC |
Series 3A: DIC |
Stressors on Marine Phytoplankton |
Phase |
Series 3A: Nutrients |
Series 3A: nutrients |
Stressors on Marine Phytoplankton |
Phase |
Series 3A: pH |
Series 3A: pH |
Stressors on Marine Phytoplankton |
Phase |
Series 3A: photophysiology |
Series 3A: photophysiology |
Stressors on Marine Phytoplankton |
Phase |
Series 3A: POC, PON, Chl a |
Series 3A: POC, PON, chl-a |
Stressors on Marine Phytoplankton |
Phase |
Series 4A: photophysiology computed |
Series 4A: photophysiology COMPUTED |
Stressors on Marine Phytoplankton |
Phase |
Settlement |
Blue mussel settlement |
MuLTI-2 |
Plate_Number |
Shaw 2016: Acropora pulchra calcification experiment 1 |
Calcification rates of Acropora pulchra under two pCO2 levels and two temperatures |
OA coral adaptation, MCR LTER |
genotype |
Shima_Osenberg_2003 |
Spatio-temporal exploration of covariation among densities, environmental characteristics and strength of density-dependent mortality of reef fish, Thalassoma hardwicke. |
CDD_in_Reef_Fish |
PULSE |
Shoreline condition and socioeconomics |
U.S. coastal county socioeconomic and shoreline condition |
EstuarineMetaDyn |
shore_type |
Si Depletion Experiment: EDS and SEM |
|
Coccolithophore Silicon Requirements |
Magnification, Total_Counts, KeV |
SIMCO 1 and 2: Taxonomic transcript bins |
Taxonomic binning of transcripts from samples collected during the SIMCO1 and SIMCO2 |
SIMCO |
organism_strain |
Single cell mass spec Cell-Cell interaction |
|
Creatine Cycling |
Cell_Line, Cell_Number, Description |
Single cell mass spec lipid double bonds |
|
Creatine Cycling |
Cell_Number |
Single cell mass spec metabolites |
|
Creatine Cycling |
Cell_Number |
Single-cell genomics of Chloroflexi |
Chloroflexi accessions |
Subsurface FeOBs |
gene |
Sinking particle sample information for BATS microbial communities |
|
Marine Plankton Aggregation |
library_strategy, library_source, library_selection, library_layout, sample_description, library_ID, SRA_title |
Siphonophore sample log |
Siphonophore sample log |
SiphWeb |
ConceptName |
Skeletal Mineralogy - Carbonate Chemistry |
Skeletal Mineralogy - Carbonate Chemistry |
OA - Ocean Acidification and Warming Impact on Calcification |
Tank |
Smallmouth Grunt Otolith Morphology |
Smallmouth Grunt Otolith Morphology |
OA-OTO MIN |
PERIM, CIRC, LATD, VISC, VATR, OTIE, OSIDE, OTYPE |
Smith Island N cycle: 2014 Seasonal Field Data |
|
Oyster Reef N2O Emission |
Season |
Smith Island N cycle: 2014 Seasonal Fluxes |
Fluxes across the sediment-water interface collected seasonally using continuous flow core incubation |
Oyster Reef N2O Emission |
Season, Sample |
Snail anti-predator behavior |
Effects of ocean acidification on anti-predator behavior of snails |
BOAR Trophic |
Out_of_water, In_water, Proportion_of_time_out_of_water, Path_Length, Path_Shape, Snail, Cue |
South China Sea 16S |
16S gene sequencing of microbial communities from South China Sea sediments |
Edginess in the subsurface |
sedimentology |
Southern Ocean foraminifer N isotopes |
Planktic foraminifer tissue and shell d15N from net tows in the African sector |
N Isotopes Foraminifera, stable isotope instrumentation, Diatom-bound_N_Isotopes |
type |
Sponge holobiont accessions and metadata |
Sponge holobiont accessions and metadata |
DimensionsSponge |
sample_type |
Sponge Symbiont Carbon and Nutrient Cycling |
Sponge Symbiont Carbon and Nutrient Cycling |
Sponge_Loop |
isolation_source |
Squidpop Assays 2021 |
Squidpop Assays 2021 |
Temperature and Herbivory |
Eaten |
Sr Experiment: Coccolith Morphology |
Sr Experiment: Coccolith Morphology |
Coccolithophore Silicon Requirements |
Murolith_Normal, Murolith_Incomplete, Murolith_Malformed, Murolith_Aberrant, Lopadolith_Normal, Lopadolith_Expected_Malformed, Lopadolith_Incomplete_Type_S, Lopadolith_Malformed_Type_R, Lopadolith_Aberrant_Type_T |
Srednick et al. 2020 - L&O Methods - Flow |
|
OA coral adaptation, MCR LTER |
POSITION |
SSU rRNA Gene Sequencing from SPOT |
SSU rRNA Gene Sequencing from SPOT |
SPOT |
submitted_ftp, submitted_format, study_title, fastq_ftp |
St John Octocoral Abundances 2019 |
Octocoral colony heights measured during transect surveys at four sites on the south shore of St. John, US Virgin Islands in June-October 2019 |
Octocoral Community Dynamics |
Damage, Cyphoma_present |
St. John Octocoral Forest Closure Photo Analysis for Community Quadrats |
|
Octocoral Community Dynamics, St John Coral Reefs |
Closure_Photo_ID, Quadrat_Number, Proportion_Closed |
Stable Isotope 13C and 15N |
Stable Isotope 13C and 15N |
Sponge Holobiont DOM |
Tissue_Type |
Station logs - TRANSPORT FSBT-11 and -12 |
Sample logs from the Fixed Station cruises of the TRANSPORT program, 2011-2012 |
TRANSPORT |
pump_samples, pycno_type |
Stress bands bleaching |
Comparison of bleaching data to stress bands in Porites corals on Palau reefs |
Thermal Thresholds and Projections |
pcnt_stress_bands |
Subtidal Temperatures |
Subtidal Temperatures |
RAPDGALPGS |
deployment |
Sulfide concentrations |
Sulfide concentrations from INSPIRE track 1. |
INSPIRE_Pyrite |
culture_medium |
Sulfitobacter phage accessions |
Sulfitobacter phage accessions |
Roseophage as a Model |
description |
Sulfur Geochemistry |
Sulfur geochemistry of the Santa Elena (Costa Rica) ultramafics |
Controls on biological activity |
sample_group, description |
Survey Quadrats: organism sizes |
Survey counts and sizes |
Oyster Reef Reversal |
reef_type |
Survival and growth results from oyster reciprocal transplant experiment |
|
Predatory NCEs and Scale |
color |
Swimming Endurance |
Ontogeny of swimming endurance of larval Amphiprion percula, Elacatinus lori, and Elacatinus colini from Belize in 2015. |
Elacatinus Dispersal II |
batch_id |
Symbiodinium community composition |
Symbiodinium community composition for individual A. cervicornis. |
EMUCoReS |
bleaching, disease, mortality |
Synechococcus growth and genetic sequence accessions from pCO2 experiments |
|
LTPE |
Strain, Transfer |
T Lake PC1 Chronology |
14C Dates from core PC1, T Lake, Palau |
PaPaPro |
mat_dated |
T. rotula Common Garden Experiment |
T. rotula Common Garden Experiment |
Phytoplankton Community Responses |
Description |
T. rotula microbiome global sample |
T. rotula microbiome global sample |
Diatom Gene Flow |
Desc |
Table 1. 210Pb, 210Bi, and 210Po activities in rain and lake water |
Table 1: Pb, Bi, Po |
Bi 210 measurement |
type |
Table 3 - Hatching success |
Table 3 - Hatching success |
OA Calanus Survival |
SOURCE |
Targeted metabolite abundances: particulate |
Targeted particulate metabolite abundances |
Deep Atlantic DOM |
filter_type |
TEM Pleurochrysis carterae thin section images |
Transmission electron micrographs of P. carterae CCMP 645 cell thin sections |
Marine Chronic Viruses |
magnification, cell_id |
TEM Pleurochrysis carterae virion images |
Transmission electron micrographs of virions from P. carterae CCMP 645 culture supernatant |
Marine Chronic Viruses |
print_mag, direct_mag |
Temperature Data |
Temperature data |
CalCoast Grazer TDBU |
TrtGroup, HerbivoreTreat, TempTreat, NutrientTreat |
Temperature Loggers |
|
Reef Fish Resilience |
SEN_SN, LoggerName, LGR_SN |
TEN Biomass Morphometrics Spring 2018 |
TEN Biomass Morphometrics Spring 2018 |
Tropicalization Seagrass Beds |
grazer_shoot, epiphyte_load, grazing_shoot |
Thermal Stress Experiment: Experimental Tank Conditions |
Thermal Stress Experiment: Experimental Tank Conditions |
Holobiont Integration |
Position |
Tidal study of seawater microbial communities |
|
Coral Exometabolomes |
Sample_type |
TN327 Axial 2015 ROV Samples |
|
NeMO2015 |
Platform_type, IGSN, Platform_name, Sample_name, Launch_platform, Sample_type, Launch_platform_name, Material, Collector, Description, Collection_date_UTC, Collection_method, Current_archive_contact, Collection_method_descrip, Current_registrant_name, Purpose, Original_registrant_name, Release_date, Elevation, Elevation_unit, Nav_type_name, Physiographic_feature, Physiographic_feature_name, Location_description |
TN391 Sentry Dive Summary |
TN391 Sentry Dive Summary |
SALT |
Preservation, Container, number_of_containers, Container_Packaging, Storage, Recipient_of_Sample |
Total spectral count of proteins |
Global metaproteomic dataset for KM1128 the METZYME expedition. |
MetZyme |
best_hit_annotation, KO_desc, PFams_desc |
TP metals sediments with no pretreatment |
|
Marine Sediment Analysis 31P NMR |
Type, Extract, Analyte_Name |
TP sediments with pretreatment |
|
Deep sea sediments |
Extract, Step, Dilution, Analyte_Name |
TP sediments with pretreatment |
|
Marine Sediment Analysis 31P NMR |
Extract, Step, Dilution, Analyte_Name |
Trace-metals from CTD casts and underway water samples |
|
DANCE |
sample_source |
Trait data: native, cryptogenic, introduced species |
|
Competition and Predation across Latitude |
Status, Org_cont, Wat_cont, Sex_rep, Fert_type, Asex_rep, Egg_size, Lar_dev, Feed_struc, Struc_defe, Sociability, Growth_form, Color |
Transcriptomic response of Emiliania huxleyi to HHQ |
Transcriptomic response of Emiliania huxleyi to HHQ |
HHQSignals |
sample_name, strain, sample_type |
Trawl survey: catch composition |
Trawl catch composition |
PelagicHypoxia |
Juvenile |
Trawl survey: fish and jellyfish sample data |
Fish and jellyfish sample data |
PelagicHypoxia |
Stomach, Isotope |
Trawl survey: fish and jellyfish stomach contents |
Fish and jellyfish stomach contents |
PelagicHypoxia |
Fullness, Digest |
Trichodesmiium field metaproteomes - sample provenance |
|
MM Saito, MM Proteins and Organics Tech, Cyanobacteria Warming Responses, TriCoLim |
Replication, Time_sampled |
Trichodesmium AHL metatranscriptomes_AE1409 |
GenBank Trichodesmium accessions and associated metadata |
P Processing by Tricho |
title |
Trichodesmium consortia metagenomics |
16S tag data, metagenomic data, and a draft assembled genome of Altermonas macleodii derived from laboratory-maintained Trichodesmium erythraeum cultures |
HiCO2_AdaptCyano |
description |
Trichodesmium field metaproteomes - peptide spectral counts |
|
MM Proteins and Organics Tech, Cyanobacteria Warming Responses, TriCoLim, MM Saito |
other_protein_ids, best_sequest_DCn_score, sample_type, best_sequest_Xcorr_score, protein_id, peptide_start_index, peptide_stop_index, best_peptide_id_probability |
Trichodesmium field metaproteomes - protein spectral counts |
|
MM Proteins and Organics Tech, Cyanobacteria Warming Responses, TriCoLim, MM Saito |
protein_id, kegg_pathway, other_identified_proteins, protein_name, pfams_id, sample_type, kegg_id, pfams_name, kegg_description, enzyme_comm_id |
Trichodesmium field metaproteomes - protein spectral counts in alternative format |
|
MM Saito, MM Proteins and Organics Tech, Cyanobacteria Warming Responses, TriCoLim |
Protein_Product_Name, KO_Annotation, Pfam_Annotation, Protein_Accession |
Trichodesmium field metaproteomes - single colony metaproteomes |
|
MM Saito, MM Proteins and Organics Tech, Cyanobacteria Warming Responses, TriCoLim |
Protein_Product_Name, KO_Annotation, Pfam_Annotation, Protein_Accession |
Trichodesmium proteomes and Hi CO2 adaptation |
Trichodesmium nutrient-limited proteomes in 380 and 750 uatm CO2 |
HiCO2_AdaptCyano |
Locus_Tag |
Trichodesmium sequence accessions |
GenBank Trichodesmium accessions and associated metadata |
P Processing by Tricho |
sample_type |
TriCo Lim Particulate Organic Phosphorus |
Particulate organic phosphorus experiments |
TriCoLim |
Treatment |
Tubeworms |
|
Costa Rica Seeps |
Collected_in |
Turf Polyp Counts |
|
Octocoral Community Dynamics |
container, tile_letter, tile_code, tag |
Turf Polyp Locations |
|
Octocoral Community Dynamics |
tag, polyp |
Turf Tile Cover |
|
Octocoral Community Dynamics |
tag |
UCYN-A Host activity |
UCYN-A/Host activity in DIN-rich waters |
BSUCS |
iso_sub, Sublineage |
UDAS |
Underway Data Acquisition System (UDAS) data |
Diatom Group Si Prod |
Tag, Call_Sign |
USVI Time-series |
USVI Time-series |
Coral Chorus |
depthtype, Library, prehurricane, disease |
V4 SSU rRNA gene primer validation for reef seawater |
Partial SSU rRNA genes of bacteria and archaea from reef seawater samples produced using 515F/806R and 515F/806RB primers |
Coral Microbial Relationships |
sample_descrip |
Vegetative Shoot Heights |
Vegetative Shoot Heights |
ZosMarLA |
Unique_Quadrat |
Vent chemistry |
Concentrations of anions, cations, and trace elements/metals from vents near Milos I., Greece. |
Hydrothermal Autotrophic Carbon Fixation |
sample_descrip |
Vent Parasite Dissection Data |
Species dissection rom the 9°50’N deep-sea hydrothermal vent field. |
EPR Functional Diversity |
PRESERVATION, HOST_TISSUE, PARASITE_MORPHOGROUP_NAME, BASIS_FOR_TAXONOMIC_ASSIGNMENT, PARASITE_CONSUMER_STRATEGY, PARASITE_LIFE_CYCLE, PARASITE_SAMPLES, PATHOLOGY |
Vharveyi_SiderophoreConcentrations |
|
Bacteria Iron Siderophores |
Strain, Siderophore |
Visual Bleaching Scores Summer 2018 |
|
Heat Tolerant Corals |
Score |
Visual monitoring of A. cervicornis |
Bleaching, disease, and mortality on an individual basis 2014 and 2015. |
EMUCoReS |
condition |
vitamin B dissolved - Hotmix 2014 |
Dissolved B vitamins from Hotmix expedition, 2014 |
B-vitamin plankton succession |
analyte |
vitamin B particulate - Hotmix 2014 |
Particulate B vitamins from Hotmix expedition, 2014 |
B-vitamin plankton succession |
analyte |
vitamin B particulate - Vitacopss 2015 |
Particulate B vitamins from Vitacopss, San Pedro Ocean Timeseries (SPOT), 2015 |
B-vitamin plankton succession |
analyte |
Vouchered specimens |
Vouchered specimens |
Costa Rica Seeps |
typeStatus, materialPreserved, voucherTreatment, voucherPreservative, otherCodes |
Water column nutrients - Inside and outside kelp |
Water column nutrients - Inside and outside kelp |
Kelp forest biogeochemistry |
Sample_depth |
Water Quality |
Water Quality |
Oyster Reef Reversal |
sample_type, surf_bot |
Water temperature at coral colonies |
Water temperature at coral colony locations |
Bleaching American Samoa |
pool |
Wave Glider - Holographic Images |
Holographic Images from LISST-Holo system |
MAGI |
holoNum, holoNum_difs, qtrRCellsPL |
West Mata 2009 DOC,13C-POC, DON |
|
West Mata Volcano |
UH_Sample_Series, Dive_CTD_cast, Fluid_Sampler |
Whelk-Barnacle Predation Experiments |
Whelk-Barnacle Predation Experiments |
Temperature and Herbivory |
Position_of_Whelk, WhelkPosition |
White Plague Disease Transmission Phenotypic Response |
|
Coral Immune Traits |
Colony, Parent_ID, ID, Days_to_infection, cm2_lost, cm2_per_min, cm2_per_day, percent_lost, percent_lost_per_min, percent_lost_per_hour, percent_lost_per_day |
Whole genome sequence accessions from Ammonia-Oxidizing Archaea (AOA) |
Whole genome sequence accessions from Ammonia-Oxidizing Arachae (AOA) |
N-Cycling Microbial Communities |
Organism |
Woodfalls (Wood Fall project) |
Datasheet provides information for individual wood falls including size and deployment information. |
Wood Fall |
max_diameter, min_diameter, wood_mass_final, notes, weight_wood_zip, weight_packet_total_1, weight_wood_only, weight_wrap_only, weight_zip, zip_tie_length, weight_packet_total_2, experiment, deployment_row, deployment_column, wood_type, length |
Wrack Composition and Abundance |
Wrack composition and abundance on sandy beaches |
Linking Kelp to Beaches |
Start, End, Type_Code, Type, Depth |
yawzi point and tektite |
Coral community structure at Yawazi Point and Tektite in St. John before and after five hurricanes from 1988–2017 |
RUI-LTREB |
Timing |
ZEN 2014 Site Survey Data |
Eelgrass 2014 Site Survey Data |
ZEN 2 |
Sampling_Time |
Zill et al 2017 Sediment Removal Rate |
A manipulative experiment to determine the growth rate of corals in the presence and absence of sediment and vermetids. |
Vermetids_Corals |
Morphology, Block |
ZooSCAN MOCNESS BATS: M3 to M13 |
|
Zooplankton Gradients, Zooplankton Diel Rhythm, BIOSSCOPE |
object_id |
Zostera marina flowering shoots |
Heights and stages of Zostera marina flowering shoots |
ZosMarLA |
number_of_spathes, Unique_Quadrat |