16S and 18S rRNA gene amplicon sequences |
16S and 18S rRNA gene amplicon sequences |
HHQSignals |
bioproject_accession, biosample_accession |
16S rRNA and hydrazine oxidoreductase genes |
Sequence accession numbers of 16S rRNA and hydrazine oxidoreductase genes (hzo) from Cape Fear River Estuary. |
Estuarine ANAMMOX |
accession_number_link |
16S rRNA clone library |
NCBI Accessions for 16S rRNA clone libraries made with bacterial 8F and 519R primers. |
CoFeMUG |
NCBI_Accession |
16S rRNA gene and particulate monooxygenase diversity |
16S rRNA gene and particulate monooxygenase diversity |
Authigenic Carbonate Ecosystems |
accession_number |
16S rRNA gene clones from NE Pacific bacterioplankton |
16S rRNA gene clones from bacterioplankton in the NE Pacific Ocean |
Sulfur Oxidizers |
NCBI_accession |
16S rRNA gene from DNA |
16S rRNA gene (from DNA) |
Subvent_Biosphere_Sediments |
MGRAST_Accession_ID |
16S rRNA gene sequences from iron mats |
Accession links to NCBI for 16S rRNA gene sequences from iron mats |
Ecology of Vent Mats |
accession_id |
16S rRNA gene sequences of bacteria from members of an Arctic clade |
16S rRNA gene sequences of bacteria including some of Arctic96BD-19/SUP05 clade |
Sulfur Oxidizers |
NCBI_Accession |
16S rRNA sequence and collection data |
Microbial 16S rRNA sequence data from East Pacific Rise biofilms |
Microbial Communities at Deep-Sea Vents |
BioProject, SRA_experiment, NCBI_accession |
16S rRNA Sequences |
16S rRNA sequence data from venting fluids and microbial mats at Axial Seamount, 2011. |
AXIAL |
biosample_number, biosample_link, bioproject_accession, bioproject_link |
515F-926R 16S rRNA accessions |
515F-926R 16S rRNA accessions, Mariana and Kermadec trenches, 2014 |
Mariana Perspectives |
Bioproject_link, Biosample_link |
5c_BLAST results |
GenBank BLAST results of copepod nauplii gut contents |
food limitation in copepod nauplii |
GenBank_id |
Accession Numbers |
Accession numbers and characteristics of 33 microsatellite loci developed for Gracilaria vermiculophylla. |
Gracilaria effects |
accession_num, accession_URL |
Accession numbers |
Palatability of non-native alga |
Genetic Adaptation Marine Inv |
accession_number |
Accession numbers (P. carterae viruses and field samples) |
Accession numbers for genetic sequences from virus-enriched field samples and P. carterae CCMP 645 culture co-infections |
Marine Chronic Viruses |
accession_id |
Acropora cervicornis bleaching sequences |
Acropora cervicornis bleaching sequences |
Coral Rickettsiales |
bioproject_accession, SRA_run_ID, SRA_study_ID |
Acropora hyacinthus ITS2 amplicon sequencing |
|
Moorea coral bleaching |
Accession |
Alteromonas ancestor |
Clones of Prochlorococcus MIT9312 and link to BioProject |
P-ExpEv |
bioproject_accession, biosample_accession |
Alteromonas macleodii MIT1002 replete proteome |
Alteromonas macleodii MIT1002 replete proteome |
C-CoMP Model Bacteria |
ncbi_id |
Anaerobic Peru Margin 2002 |
Sub-seafloor metatranscriptomes from anaerobic Peru Margin sediments collected on JOIDES Resolution, Leg 201. |
Microbial Euk Div Mar Subsurface |
SRA_URL, accession_URL, accession_number, SRA_number |
Anaerobic Sediment 18S rRNA amplicons |
Iberian Margin Anaerobic Sediment 18S rRNA amplicons. |
Subseafloor Microbial Ecology |
BioProject_ID, BioProject_URL, SRA_ID, SRA_URL |
Anderson & Rynearson 2020: Skeletonema CHN |
CHN |
Phytoplankton Community Responses |
GenBank |
Anderson & Rynearson 2020: Skeletonema thermal growth |
Anderson & Rynearson 2020: Skeletonema thermal growth |
Phytoplankton Community Responses |
GenBank |
ARISA bin taxonomy |
Putative taxonomic information for ARISA bins as generated from clone libraries, |
Bacterial, Archaeal, and Protistan Biodiversity, Marine Viral Dynamics |
Accession, SecAccession |
Assembled genome sequence for the virus ANMV-1 |
Assembled genome sequence for the virus ANMV-1 |
Viruses in Methanotrophic Marine Ecosystems |
Accession |
Assembled metagenome sequences > 500 bp |
Assembled metagenome sequences > 500 bp from EPR, Lo'ihi, and control |
EPR and Loihi basalt genomes |
NCBI_accession |
Asteroid viral and bacterial metagenome genetic accession information |
|
Sea Star Microbiology |
Accession_number |
Atlantic silverside (Menidia menidia) cDNA transcriptome and TSA accessions |
Atlantic silverside (Menidia menidia) cDNA transcriptome and TSA accessions |
Fishery Genome Changes |
accession_id, BioProject |
Atlantic silverside (Menidia menidia) raw low-coverage genomic sequence accessions |
Accession numbers for raw low-coverage genomic sequence reads from 876 different Atlantic silverside individuals |
Fishery Genome Changes |
SRA_Accession, BioSample_Accession, BioProject_Accession |
bacterioplankton_dmdA_sequences |
Links to published dmdA sequences from marine bacterioplankton from Sapelo Island, GA. |
En-Gen DMSP Cycling |
accession_number |
BATS_cDNA_sequences |
Link to published bacterial cDNA sequences from BATS station. |
En-Gen DMSP Cycling |
repository |
Brothers Volcano Metagenome-Assembled Genome Accession Numbers |
Brothers Volcano Metagenome-Assembled Genome Accession Numbers |
Brothers Volcano Microbiology |
WGS_accession |
BWLD-C7 subsurface microbes |
BWLD-C7 subsurface microbes |
Virus-host anoxic sediment |
sample_accession, bioproject_accession |
Candidatus Thioglobus autotrophica strain EF1 |
Complete genome sequence - first cultured chemoautotroph from SUP05 clade |
Sulfur Oxidizers |
GenBank_accession |
Candidatus Thioglobus singularis strain PS1 |
Complete genome sequence - first cultured mixotroph from SUP05 clade |
Sulfur Oxidizers |
GenBank_accession |
Cannon_2013_T2: NCBI accessions |
Hemichordata and Echinodermata NCBI accessions |
Antarctic Inverts |
accession_rDNA_16S, accession_rDNA_18S |
Cannon_2014_S2: Hemichordata and Echinodermata sample log and accessions |
Hemichordata and Echinodermata transcriptome NCBI accessions |
Antarctic Inverts |
NCBI_accession |
CARP accession numbers |
Sequence accession numbers for coral acid rich proteins (CARPs) from Stylophora pistillata. |
CROA |
accession_number |
Chemistry and cell counts |
Chemistry and cell counts of formation fluids from North Pond |
North Pond Microbes |
bioproject_id |
Circovirus DNA Sequence Information |
DNA sequences of viruses associated with Copepods |
Viruses in Copepods |
accession_no |
cluster analysis - cross-phyla protein clustering |
Cross-phyla clustering of non-redundant carbonate organic matrix proteins grouped by hierarchical clustering. |
CROA |
sea_urchin_accession, coral_accession, mollusk_accession |
COLI 16S rRNA sequences |
16S rRNA Sequences from cathode-oxidizing lithoprophic isolates (COLI) from Catalina Harbor Marine sediments. |
PassElectronsThruMarSed |
accession_num, accession_link |
Community 16S rRNA gene sequences |
16S rRNA accessions |
Vibrio-dust deposition |
BioProject |
Copepod Bacteria RNA transcriptome Sequences |
Bacteria assemblages associated with Eurytemora affinis in both salt and fresh water |
CopepodMicrobiome |
SRA_accession_number |
Copepod RNA-Seq sample information and accessions |
|
Neocalanus Gulf of Alaska |
BioProject, NCBI_Biosample_Acc_No, NCBI_SRX_Acc_No |
Coral Associated Microbes on Mo'orean Coral Reefs |
Bacteria and Archaea found on coral, sediment, and water in Mo’orea, French Polynesia |
Moorea Virus Project |
BioSample_accession |
Coral cDNA Expressed Sequences |
cDNA Expressed Sequence Tags for the corals Acropora palmate and Orbicella faveola |
SymBioSys |
GenBank_GI, GenBank_ACC, EST_Name |
Coral colony sequece accessions: Hidden resilience to recurrent bleaching |
|
Bleaching American Samoa |
Accession |
Coral colony sequence accessions: The genomics of recovery from coral bleaching |
|
Bleaching American Samoa |
accession |
Coral images and accession numbers |
Species images and accession numbers for tissue, mucus, and holobionts analyzed. |
Coral Microbial Relationships |
holobiont_accessionLink, tissue_accessionNumber, tissue_accessionLink, mucus_accessionNumber, mucus_accessionLink, holobiont_accessionNumber |
coral life stages - Illumina |
Illumina sequenced 16S rRNA genes amplified from different life stages of 2 corals |
MiCoDe |
BioSample, SRA_accession |
Coral reef seawater microbial communities |
Coral reef seawater microbial communities |
Coral Exometabolomes |
NCBI_BioProject_accession_number, NCBI_BioSample_accession_number |
Coral Sample Microbiome |
Coral Sample Microbiome |
Killer Seaweeds |
Accession, BioProject, Object_ID |
Coral SSU rRNA gene database |
Coral SSU rRNA gene database |
Coral Microbial Relationships |
Sequence_Identifier, gi_number, Accession_number, Accession_Number |
Coral-bacterioplankton data from mesocosm experiments |
Bacterioplankton data from coral and coral mucus aquaria experiments. |
Coral Microbial Relationships |
accession_number |
Crassostrea virginica gonad MBD-BSseq |
GenBank metadata for Eastern oyster gonad methylation and OA |
Epigenetics to Ocean |
biosample_accession, bioproject_accession |
Cyanomyovirus genome sequences |
Genbank accession numbers for genome sequences of cyanomyoviruses collected from the coastal waters of North America |
Cyanophage-Synechococcus interactions, Cyanophage Evolutionary Ecology |
Genbank_accession |
dataset1_Krug_et_al_2015: Suppl. Table 3: Accessions |
Table 3: accessions: COI, 16S, 28S. H3 for ~200 spp. |
PLDvFST |
accession_COI, accession_16S, accession_H3 |
dataset2_Krug_et_al_2012: Elysia accessions |
Elysia spp. accessions for COI, 16S, H3 |
PLDvFST |
NCBI_H3_accession, NCBI_COI_accession, NCBI_16S_accession |
dataset3_Supp1_Krug_et_al_2011: Elysia sequences |
Accessions for COI, 16S, H3 for 18 Elysia species |
PLDvFST |
accession_COI, accession_16S, accession_H3 |
dataset4_Krug_et_al_2012: Philine sequences |
Accessions for 16S for Philine species |
PLDvFST |
accession_16S |
dataset5_Vendetti_et_al_2012: Elysia pusilla sequences |
Accessions for COI, 16S, H3 from Elysia pusilla and E. spp. |
PLDvFST |
accession_COI, accession_16S, accession_H3 |
dataset6_Krug_et_al_2013: Sequences |
Accessions for COI, H3 for three species complexes |
PLDvFST |
accession_COI, accession_H3 |
dataset8- Oxynoe sequence data |
Species names, sample codes, and collection details for sequenced taxa used in phylogenetic analyses. |
PLDvFST |
accession_COI, accession_16S, accession_H3, specimen_accession_numbers |
Deep Biosphere Eukaryotic rRNA |
Sub-seafloor sediment eukaryotic rRNA collected on JOIDES Resolution Legs 201 and 204, R/V Maria Merian at North Pond, and R/V Meteor at the Benguela Upwelling System. |
Microbial Euk Div Mar Subsurface |
SRA_number, SRA_URL |
Deep-sea larvae for microbiome study |
Deep-sea larvae for microbiome study |
EPR Functional Diversity, Mariana Back-arc Vents, Metacommunity Dynamics |
microbiome_16S_Dryad |
Delta Nitrification Study - GenBank Accession Numbers |
GenBank accession numbers for ammonia oxidizer genes. |
N-Cycling Microbial Communities |
accession_numbers |
DHAB halocline - nematodes |
Metatranscriptome data for pools of 10 nematodes picked from halocline and nearby control sediments. |
DHAB Metazoans |
BioSample_id, SRA_exp_id, SRA_run_id, BioProject_id |
Diatom Matrix Mass Spectrometry |
MetaboLights accessions: MS samples |
Metabolic Currencies, Carbon Currencies Microbes |
MetaboLights_accession_number |
Diatom Matrix NMR |
MetaboLights accessions: NMR samples |
Carbon Currencies Microbes, Metabolic Currencies |
MetaboLights_accession_number |
Diatom Matrix RNAseq |
NCBI accessions |
Metabolic Currencies |
NCBI_Bioproject_Accession, BioSample, NCBI_Genome_Accession |
Diatom microbiome |
Identification of microbiome from different Pseudo-nitzschia species |
bacteria, virus, diatom interactions |
NCBI_bioproject_id |
Diatom reference sequences |
Reference sequences, genes, and K0 numbers for sampled diatoms. |
Polar_Transcriptomes |
accession_number, accession_link, K0_number, K0_accession_link |
DICE_sequences |
Links to published dmdA, cDNA, and RNA sequences from the Dauphin Island Cubitainer Experiment (DICE). |
En-Gen DMSP Cycling |
sample_accession |
Diel_Metatrans |
Diel_Metatrans |
C-MORE, CANON |
BioProject, SRX, BioSample |
DNA and cDNA (RNA) 18S V4 tag sequences from 5m and DCM |
|
SPOT |
Accession, bioproject_accession |
DNA primer accession numbers |
Accession numbers of microsatellite DNA primers and links to GenBank. |
Pop connectivity of coral reef fishes |
GenBank_accession_number, accession_number_link |
Domel_2017_T1: Pallenopsis patagonica specimen and outgroups with accessions |
Pallenopsis patagonica specimen and outgroups with accessions |
Antarctic Inverts |
ZSM_voucher_number, COI_GenBank_BOLD_number, ITS_GenBank_BOLD_number |
Dorado Outcrop basalt DNA sequences |
Accession numbers for clone and Illumina amplicon sequence libraries from Dorado Outcrop basalts |
Dorado ridge flank environment |
accession_number, accession_link |
DYEatom: Metatranscriptome accessions and assembled contigs |
|
Diatom Silicification |
BioSample, Accession, ID |
EPR 9 North Plume Particles |
Bacterial 16S rRNA sequences from hydrothermal plume particles |
RESET06 |
accession_num, accession_link, popset_id, popset_link |
EPR 9N Inactive Sulfides |
Bacterial 16S rRNA sequences from inactive sulfide chimneys |
Bacwards |
accession_link, popset_id, popset_link, accession_num |
ESP 2016 Seq |
Metagenomic, metatranscriptomic, and single cell sequencing data from the Fall 2016 ESP deployment in Monterey Bay, CA |
OceanSulfurFluxBact |
GOLD_Project_ID |
ETNP ODZ Metagenomes April 2012 |
Assembled metagenomes collected in the Eastern Tropical North Pacific Oxygen Deficient Zone in April 2012 on TN278 |
EAGER Deep Prochlorococcus |
Short_Read_Archive_Accession_Number, Whole_Genome_Shotgun_Accession_Number, WGS_Velvet_Assembly, WGS_MEGAHIT_Assembly, BioProject_Accession, BioSample_Accession_Number |
ETNP Viromes |
Accession Numbers of Viral Metagenomes from the ETNP |
OMZ Viruses |
JGI_Project_Id, IMG_Genome_ID |
GenBank accessions |
GenBank accession numbers and links for microbial isolates from sediment samples collected at Paleochori Bay, Milos island, Greece |
Hydrothermal Autotrophic Carbon Fixation |
GenBank_acc |
Gene expression profiles from high CO2-adapted Trichodesmium |
gene expression profiles obtained from high through put illumina sequencing of multiple long-term evolved lines of Trichodesmium. |
Trichodesmium in High CO2 |
accession_number |
Gill 16S rRNA amplicon sequencing |
GenBank Short Read Archive (SRA) sequence accession numbers for 16S rRNA gene amplicon data from the gills of Alviniconcha species, Ifremeria nautilei, and Bathymodiolus septemdierum. |
Eco Dyn W Pacific Vents |
SRA_Accession |
Glaucus atlanticus sample voucher log |
Glaucus atlanticus sample locations, museum voucher and GenBank accession numbers |
Neuston Phylogeny |
accession_num |
GO-SHIP SPE-DOC |
GO-SHIP SPE-DOC |
DOC 14C and 13C |
UCI_AMS_Number |
Halanych-Kocot_2014_T1: NCBI accessions |
Antarctic invertebrate collection locations and NCBI SRA accessions |
Antarctic Inverts |
NCBI_SRA_accession |
Halanych_2013_T1: NCBI accessions |
NCBI accessions |
Antarctic Inverts |
accession_rDNA_18S, accession_rDNA_16S |
haplotype_accession_numbers |
Accession numbers for planktonic ciliate haplotypes |
CiliateDivGenePop |
accession_number |
Harder_2016_T1: sea spider Pallenopsis sampling sites and COI NCBI accessions |
Sea spider Pallenopsis sampling sites and COI NCBI accessions |
Antarctic Inverts |
GenBank_accession |
Havird_2015_T1: NCBI accessions: COX and PXDN |
NCBI accessions |
Antarctic Inverts |
NCBI_accession |
Havird_2015_T2: NCBI accessions: MPO and PXDN |
NCBI accessions: MPO and PXDN outgroups |
Antarctic Inverts |
NCBI_accession |
Hawaiian reef fish genetic accessions 2016 |
Genetic accessions at NCBI Genbank |
Hawaiian Fish Origins |
Genbank_Accession_Range |
Heterosigma akashiwo acclimation |
Heterosigma akashiwo acclimation - BioProject PRJNA377729 |
P-ExpEv |
bioproject_accession |
Hurricane Harvey Coral Gene Expression |
|
Rapid Reefs Harvey |
SRA, Accession |
Hydrographic and nutrient data |
|
ETNP_ParticleOmics |
NCEI_accession |
Illumina Sequences |
|
SedimentaryIronCycle |
sequence_accession_number |
Invertebrate Barcodes from Papua New Guinea |
|
OA_Gradient_Biodiversity |
Accession |
Isolate information |
Isolate information on genes found in samples collected on LMG1411. |
Polar_Transcriptomes |
GenBank_bestHit, accession_number, accession_link |
Isolation culturing and sequencing of bacteria and viruses |
Environmental data describing microbes and viruses submitted to NCBI to generate BioSample accession numbers. |
Marine Bacterial Viruses |
bioproject_accession |
ITS_sequence_accessions |
Diatom ribosomal DNA sequence accession numbers. |
Diatom Gene Flow |
accession_number, accession_number_link |
Janosik_2013_T2: outgroup species and accessions |
Outgroup species and accessions |
Antarctic Inverts |
NCBI_accession |
JTMD Mytilus population genetics |
Population analysis and metagenomics of Japanese tsunami marine debris mussels |
JTMD-BF |
accession_number |
Juan de Fuca Ridge Flank SSU rRNA gene sequences |
SSU rRNA gene sequences from marine sediments, marine subseafloor, and deep seawater |
microJdFR |
Accession_id, Accession_Link, BioSample_ID, BioProjectID |
Kaneohe Bay RNA virus metagenomes |
Pyrosequencing reads (454) of marine RNA virus metagenomes |
Diversity and ecology of marine RNA viruses |
iMicrobe_accession |
Keratoisis Radiocarbon Dates |
Keratoisis Radiocarbon Dates |
Bamboo Coral Boron Isotopes |
Accession_Number |
kinetoplastid SSU rRNA seq. |
Microbial metatranscriptomics: upper and lower halocline water column |
Pickled Protists |
accession_number |
Krill barcodes |
Euphausiid DNA barcode metadata and accession numbers from global oceans |
Red Sea Krill |
NCBI_accession |
Labyrinthulomycete genetic sequences |
samples around Long Island, NY for Labyrinthulomycete PCR and sequences |
LabyLI |
accession_number |
Lau Basin and Loihi Seamount microbial mats |
Metegenomic sequences from Lau Basin low temperature vents and Loihi Seamount. |
Vent Mn-Fe Microbes |
BioProject, BioProject_URL |
Lau Basin Bacterial Low Temp Geomicrobiology |
Bacterial 16S rRNA sequences from seafloor rocks (silicates and sulfides) |
Lau Basin Geomicrobio |
accession_num, accession_link, popset_id, popset_link |
Marine Bacterial Isolates |
Bacterial isolates from marine diatom Psuedo-nitzschia |
bacteria, virus, diatom interactions |
GenBank_accession |
Metabarcoding zooplankton at station ALOHA: NCBI SRA accession numbers |
NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample |
Plankton Population Genetics |
bioproject_accession, biosample_accession |
Metabarcoding zooplankton at station ALOHA: OTU tables and fasta files |
Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU |
Plankton Population Genetics |
NCBI_top_hit |
Metagenome |
Metagenomic data |
Subvent_Biosphere_Sediments |
MGRAST_Name, MGRAST_ID |
Metagenome of Bleached and Non-bleached corals |
|
Moorea Virus Project |
BioSample |
Metagenomes - Iberian Margin |
Iberian Margin Anaerobic Sediment Metagenomes. |
Subseafloor Microbial Ecology |
SRA_ID, SRA_URL |
metatranscriptomics - Niskin vs. in situ |
Microbial metatranscriptomics: Niskin vs. in situ sampler |
Pickled Protists |
accession_number |
metatranscriptomics - upper_lower halocline |
Microbial metatranscriptomics: upper and lower halocline water column |
Pickled Protists |
accession_number |
Methane seep 16S rRNA sequences |
16S rRNA gene sequences of cells in marine methane seep sediments |
Cell-sorting and enrichment |
accession_number |
Microbial 16S rRNA gene amplicon SRA numbers |
Microbial 16S rRNA gene amplicon SRA numbers |
DeepCCZ |
bioproject_accession |
Microbial community composition McMurdo Spiophanes beds |
McMurdo Spiophanes beds 16s V4 region community composition |
McMurdo Benthos |
accession, accession_link |
Microbial community composition of the Cinder Cones Cold Seep |
Microbial community composition of the Cinder Cones Cold Seep |
Cinder Cone Seep |
accession |
Microbial eukaryotic diversity: Axial Seamount SRA |
Axial seamount SRA |
Microbial eukaryotes at hydrothermal vents |
bioproject_accession |
Microbial eukaryotic diversity: Gorda Ridge SRA |
Gorda Ridge SRA |
Microbial eukaryotes at hydrothermal vents |
bioproject_accession |
Microbial eukaryotic focused metatranscriptome data |
|
SPOT |
SRA_run, SRA_study, bioproject_accession, biosample_accession |
Microbial isolates |
Microbial isolates from sediment samples collected at Paleochori Bay, Milos island, Greece |
Hydrothermal Autotrophic Carbon Fixation |
DSMZ_accession, GenBank_acc |
Microsatellite primers for Pollicipes elegans |
Microsatellite primer sequences from Pollicipes elegans |
Gene flow across the tropics |
NCBI_accession |
mRNA sequencing - RNAseq |
mRNA sequencing - RNAseq |
OA pH, Temp, Calc Inverts |
Accession_Number |
MtCOI sequence accessions - Pollicipes elegans |
Cytochrome oxidase I DNA sequences from Pollicipes elegans |
Gene flow across the tropics |
NCBI_accession |
MWS accession numbers |
GenBank accession numbers for pathogens identified as causing MWS from Kaneohe bay, Oahu, Hawaii |
coral-pathogen interaction |
Genbank_accession_num, accession_link |
NCBI BioSample accessions for viruses and microbes |
NCBI issued accession numbers for BioSamples of microbes and viruses. |
Marine Bacterial Viruses |
BioProject_ID, BioSample, accession |
Nitrite reductase genes sequence accessions |
Nitrite reductase genes sequence accessions |
N-Cycling Microbial Communities |
accession_id, accession_range, accession_link |
Nitrosopelagicus brevis genome |
NCBI accession number link to the closed genome of Nitrosopelagicus brevis CN25 |
AmoA Archaea |
accession no. |
Nmarina global proteome |
Nmarina global proteome |
O2 Min Metalloenzyme |
Accession_number |
Nmarina targeted proteome |
Nmarina targeted proteome |
O2 Min Metalloenzyme |
Accession_number |
NP_16SrRNA_Huber |
v6 16S rRNA from IODP boreholes, seawater, and drilling mud at North Pond. |
North Pond Microbes |
bioproject_id |
Ocean Crust Microbiome Amplicon Metadata |
Metadata for sequence datasets used in ocean crust microbiome survey |
Slow Life in Crust |
SRA_Run, SRA_Study |
OTU and Sequences |
OTU and sequences |
St. John LTREB, RUI-LTREB |
Accession_number |
Oyster Rocks CpG |
Metagenomes from Delaware estuarine riverbank sediment. |
Microbial CpG Methylation |
ENA_ID |
Particle Genomes |
16S rRNA and genomes of particle associated taxa |
MINTPOM |
Accession_number |
Peptide spectral counts |
Peptides and their spectral counts and precursor intensities from KM1128 |
MetZyme, HiCO2_AdaptCyano |
protein_accession_num |
Peru Margin iTAGs |
Fungal iTAG analyses on Peru Margin sediment core samples |
Fungal and prokaryotic activity in subseafloor |
accession_num, accession_link |
Peru Margin SAGs |
Sub-seafloor single amplified genomes (SAGs) from anaerobic Peru Margin sediment. |
Chloroflexi in deep sea sediments |
BioProject_ID, accession_num, BioProject_link, accession_link |
phagotrophic protist accession numbers |
Links to GenBank accession numbers for 18S rDNA |
Feeding responses of marine protists |
accession_number |
Phytoflux_BATS |
BATS phytoplankton and cyanobacteria DGGE DNA data |
Plankton particle flux |
accession_number_1, accession_number_2 |
Phytoflux_BATS - Clone Library 2008-1010 |
Phytoplankton clone library matches from BATS cruises 2008-2010 |
Plankton particle flux |
accession_number, acc_closest_match, acc_cl_cult_match |
picoeukaryote accession numbers |
Links to Accessions for 18S rDNA , chloroplast and metagenomics data |
PHYTO_GENOME |
Accession_Number_Series, Accession_Number_Link |
planktonic ciliates: DNA accessions |
Planktonic ciliate DNA sequence accession numbers at NCBI GenBank |
CiliateSequencing |
NCBI_accession |
poly-A mRNA |
The eukaryotic (poly-A) metatranscriptome for Canterbury Basin |
Fungal and prokaryotic activity in subseafloor |
accession_num, accession_link |
Polychaete DNA sequences |
DNA sequence data deposited on GenBank for polychaetes used in the project studying the evolution and mechanics of burrowing. |
Burrowing polychaete mechanics |
accession_number |
Presence and absence of iron and light-related functional genes |
Protein information obtained from samples collected on LMG1411. |
Polar_Transcriptomes |
KO_num, accession_link |
ProteOMZ Exclusive Peptide Level Spectral Counts |
|
MM Saito, ProteOMZ (Proteomics in an Oxygen Minimum Zone) |
blast_accession, blast_best_hit_taxon_id, KO, Combo_KO, Combo_EC |
ProteOMZ Peptide Level Spectral Counts |
Total spectral counts of peptides from the R/V Falkor cruise 160115 in the Central Pacific for the ProteOMZ expedition in 2016. |
ProteOMZ (Proteomics in an Oxygen Minimum Zone) |
Protein_accession_numbers |
ProteOMZ Protein Level Spectral Counts |
Total spectral count of proteins from R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific in 2016. |
ProteOMZ (Proteomics in an Oxygen Minimum Zone) |
best_hit_annotation, KO, EC, uniprot |
Pro_ancestor |
Clones of Prochlorococcus MIT9312 and link to BioProject |
P-ExpEv |
NCBI_BioProject |
Pseudo-nitzschia amplicon sequence variants (ASVs) |
Pseudo-nitzschia asv |
C-AIM |
NCBI_GenBank_Accession_Number |
Raw LC-MS/MS |
Raw LC-MS/MS data with list of identified peptides in xml format. |
Proteomic profiling of Mariprofundus ferrooxydans |
PRIDE_project |
Raw LC-MS/MS and DNA |
Raw LC-MS/MS data, with list of identified peptides, and DNA sequences. |
Proteomic profiling of Mariprofundus ferrooxydans |
identifier |
Raw metagenome and metatranscriptome from an Fe mat at Loihi Seamount |
Sample accession numbers for raw metagenome and metatranscriptome Illumina HiSeq 2500 sequencing from an Fe mat at Loihi Seamount |
Ecology of Vent Mats |
accession_id |
reconstructed genomes |
Reconstructed genomes from North Pond |
North Pond Microbes |
bioproject_id, BioSample |
Reef biogeochemistry, metabolomics, and metagenomics |
Reef biogeochemistry, metabolomics, and metagenomics |
Coral Exometabolomes |
Project_Accession |
Reef Fish Genetic Accessions 2019 |
Hawaiian Reef Fish Genetic Accessions |
Hawaiian Fish Origins |
Genbank_Accession_Range |
RNA sequence accessions at NCBI |
|
Kleptoplasty |
SRA_Study, BioProject, BioSample |
RNA sequences |
NCBI RNA accessions for multi-stressor conditions of polar fishes |
polar_fish_adapt |
NCBI_accession |
Ross Sea metaproteome protein spectral counts |
|
CORSACS |
kegg_id, pfams_id, uniprot_id |
Ross Sea sequences |
Ross Sea sequences link |
TRACERS |
NCBI_accession |
Ruergeria pomeroyi DSS-3 replete proteome |
Ruergeria pomeroyi DSS-3 replete proteome |
C-CoMP Model Bacteria |
ncbi_id |
Salp genome and transcriptome |
Antarctic salp genome and RNAseq transcriptome |
Salp_Antarctic |
BioSample_accession, SRA_accession |
Sample Accession Numbers |
Project accession and library information on each experimental sample |
Upwelled Phytoplankton Dynamics |
bioproject_accession |
Sample locations of neustonic nudibranch Glaucus spp. |
Location data for genetic samples of nudibranch Glaucus atlanticus from global gyre systems |
Neuston Phylogeny |
accession_num |
Santa Monica Bay 18S-V4 sequencing |
|
SPOT |
Accession |
Sargasso Sea surface bacteria accession numbers |
Paired metagenomic and metatranscriptomic data from 2 cruises in the spring of 2010 and the summer of 2010 in the Sargasso Sea |
Active bacteria in surface waters |
accession_number |
SCTLD rapid microbiome characterization |
SCTLD microbiome |
Multi-Species Coral Disease |
NCBI_BioProject_accession_number, NCBI_BioSample_accession_number |
Sea star specimen information: California Academy of Sciences |
Sea star specimen information from the California Academy of Sciences |
Sea Star Microbiology |
GenBankNum |
Seawater data and site descriptions |
Site descriptions and physical environmental conditions of reefs where sampling occurred. |
Coral Microbial Relationships |
accession_numbers, accession_links |
sea_fan_parasite_sequences |
Accession numbers for Labyrinthulomycetes detected in sea fans |
Climate_CoralDisease |
accession_number |
sea_fan_sequences |
Accession numbers for Gorgonia ventalina (sea fan) sequencing data |
Climate_CoralDisease |
accession_number |
Sediment Bacteria Accession Numbers |
Lake surface sediment and submarine canyon sediment bacterial V1-V3 iTag sequence libraries. |
Buried Alive |
accession |
Sedtrap Metagenomes |
Marine sediment trap metagenomes |
C-MORE |
BioSample, BioProject, SRX |
Seep Sediment Metagenome ANM1 - Genbank BioSample SAMN00215736 |
Seep Sediment Metagenome ANM1 |
Viruses in Methanotrophic Marine Ecosystems |
Accession |
sequence accession numbers |
GenBank accession numbers for sequences from deep-sea protobranch bivalves. |
Ev Deep Sea Molluscs II |
Genbank_accession_number, accession_link |
sequence accessions |
Accession numbers for sequences generated from hydrothermal plume samples. |
Guaymas plumes |
accession_num |
Sequence accessions: archaeal and bacterial clone libraries |
Sequence accession numbers for archaeal and bacterial clone libraries from Guaymas Basin sediments |
Microbial Biogeo Guaymas |
accession_num, popset_num, accession_link, popset_link |
Sequence data accession numbers from mesocosm experiments |
Sequence data accession numbers originating from coral and coral mucus experiments. |
Coral Microbial Relationships |
accession_number |
sequence_accessions |
Sequence accession numbers from microbialite mats. |
Protists_Stromatolites |
accession_number_range, link |
Sequencing Reads |
Accession numbers |
KeysCoralPopgen |
Accession |
SERC 2019 viral dilution incubations |
Gene copy number counts and 16S analyses of July 2019 Rhode River surface water incubated with or without viral dilution |
identify cyano infections |
Library_Accession_Number_16S |
SERC time series |
Water quality data, gene copy number counts, and 16S analyses from Rhode River samples collected at SERC |
identify cyano infections |
Library_Accession_Number_16S, Shotgun_Metagenome_Library_Accession_Number, Fusion_Amplicon_Accession_Numbers |
SIMCO metatranscriptome sequence accessions |
SIMCO metatranscriptome sequence accessions |
SIMCO |
SRA_Experiment |
Single amplified genomes |
Single amplified genomes (SAGs) |
Dark ocean chemoautotrophs |
IMG_Genome_ID |
Single-cell genomics of Chloroflexi |
Chloroflexi accessions |
Subsurface FeOBs |
IMG_taxon_id, NCBI_BioSample, NCBI_accession_number |
Skeletal Organic Matrix Proteins |
LC-MS/MS sequenced proteins extracted from Stylophora pistillata skeleton. |
CROA |
accession_number, accession_num_link |
soxB Sequences |
soxB gene sequence data from microbial mats at Axial Seamount, 2011. |
AXIAL |
accession_number_range, NCBI_PopSet_ID, NCBI_PopSet_link |
Sponge holobiont accessions and metadata |
Sponge holobiont accessions and metadata |
DimensionsSponge |
BioProject, BioSample |
Sponge-Associated Microbial Communities (via 16S-V4 rRNA amplicon sequencing) Following Storm-Driven Flooding |
|
Rapid Reefs Harvey |
SRA, Accession |
spp_barcodes |
species barcodes and other genetic data |
CMarZ_2004-2010 |
AccessNo |
Sulfitobacter phage accessions |
Sulfitobacter phage accessions |
Roseophage as a Model |
accession_NCBI |
Sup_Aug-10-carbon |
Sup_Aug-10-carbon |
Lake Superior Radiocarbon |
Accession_Number |
Symbiodiniaceae communities in corals with ITS-2 rDNA amplicon sequencing |
|
Moorea Virus Project |
BioSample_Accession, SRA_Run |
Symbiont accession numbers |
Accession numbers of symbiotic algae in coral |
SymBioSys |
Genbank_accession_num |
Synechococcus accessions |
Synechococcus accessions |
Phytoplankton Community Responses |
Accession |
T. rotula Common Garden Experiment |
T. rotula Common Garden Experiment |
Phytoplankton Community Responses |
Experiment_Accession |
Tam genome analysis |
Thermovibrio ammonificans HB1 genome manual curation |
Deep Biosphere Energy Limitation |
Accession |
Thalassiosira Fe and light limitation - ENA accessions |
ENA accessions for transcriptomes of T. oceanica and T. weissflogii grown in varied Fe and light |
GeTFeHvCOdia |
ENA_2nd_study_accession, sample, ENA_sample_accession, ENA_2nd_sample_accession, ENA_expt_accession, ENA_run_accession, ENA_study_accession |
Thalassiosira Fe and light limitation - NCBI and iMicrobe accessions |
NCBI and iMicrobe accessions for transcriptomes of T. oceanica and T. weissflogii grown in varied Fe and light |
GeTFeHvCOdia |
MMETSP_sample_id, iMicrobe_sample_accession, NCBI_BioSample_id, NCBI_study_accession, NCBI_BioProject_id, NCBI_SRA_id |
Thaps microarrays - ISB |
Microarrays for T. pseudonana diatoms grown in the laboratory under different conditions. |
OA Diatom Response |
GEO_accession |
Thaumarchaea transcriptomes |
Thaumarchaea transcriptomes |
AmoA Archaea |
Accession |
Tidal study of seawater microbial communities |
|
Coral Exometabolomes |
NCBI_BioProject_accession_number, NCBI_BioSample_accession_number |
Total spectral count of proteins |
Global metaproteomic dataset for KM1128 the METZYME expedition. |
MetZyme |
KO, EC, uniprot, PFams |
Transcription in marine bacteria |
Transcripts in four cultivated marine bacteria |
EAGER Respiration |
Genbank Accession Number |
Transcriptomic response of Emiliania huxleyi to HHQ |
Transcriptomic response of Emiliania huxleyi to HHQ |
HHQSignals |
series_accession, biosample_accession, biosample_link |
Trichodesmium AHL metatranscriptomes_AE1409 |
GenBank Trichodesmium accessions and associated metadata |
P Processing by Tricho |
bioproject_accession, biosample_accession |
Trichodesmium consortia FASTq accessions |
NCBI accession numbers for raw RNA-seq fastq files derived from laboratory-maintained Trichodesmium erythraeum cultures |
HiCO2_AdaptCyano, TriCoLim |
GSM, BioSample, SRA |
Trichodesmium consortia metagenomics |
16S tag data, metagenomic data, and a draft assembled genome of Altermonas macleodii derived from laboratory-maintained Trichodesmium erythraeum cultures |
HiCO2_AdaptCyano |
accession_number, accession_link, BioProject_id, BioProject_link |
Trichodesmium field metaproteomes - protein spectral counts |
|
Cyanobacteria Warming Responses, TriCoLim, MM Saito, MM Proteins and Organics Tech |
uniprot_id |
Trichodesmium sequence accessions |
GenBank Trichodesmium accessions and associated metadata |
P Processing by Tricho |
bioproject_accession |
V4 amplicon sequencing of coral tissue |
Accession numbers and locations of species analyzed. |
Coral Microbial Relationships |
UCT_CV_glass_replicate_accessionLink, UCT_CP_glass_accession, UCT_CP_glass_accessionLink, UCT_CP_glass_replicate_accession, UCT_CP_glass_replicate_accessionLink, UCT_CV_garnet_accession, UCT_CV_garnet_accessionLink, UCT_CV_garnet_replicate_accession, UCT_CV_garnet_replicate_accessionLink, PB_V_accession, PB_V_accessionLink, PB_V_replicate_accession, PB_V_replicate_accessionLink, UCT_CV_glass_accession, UCT_CV_glass_accessionLink, UCT_CV_glass_replicate_accession |
V4 SSU rRNA gene primer validation for reef seawater |
Partial SSU rRNA genes of bacteria and archaea from reef seawater samples produced using 515F/806R and 515F/806RB primers |
Coral Microbial Relationships |
primr_806R, primr_806RB |
Vent_CSP_SAG |
Single amplified genomes (SAGs) of microbial cells isolated from Crab Spa, East Pacific Rise |
Microbial Communities at Deep-Sea Vents |
accession_IMG, GOLD_Analysis_project_id |
Vouchered specimens |
Vouchered specimens |
Costa Rica Seeps |
genBankAccessionNumber |
Whole community metatranscriptomes |
Whole community (3 domain) metatranscriptomes for Peru Margin and Canterbury Basin subsurface sediment core samples |
Fungal and prokaryotic activity in subseafloor |
accession_num, accession_link |
Whole genome sequence accessions from Ammonia-Oxidizing Archaea (AOA) |
Whole genome sequence accessions from Ammonia-Oxidizing Arachae (AOA) |
N-Cycling Microbial Communities |
Draft_Genome_Accession, SRA_Accession |
WS1209 strains |
Microbial culture collection, strain IDs, locations and depth from cruise WB1209 |
CEMSB |
GenBank_accession |