Dataset: ProteOMZ identified protein sequences
Deployment: FK160115

FASTA file of identified protein sequences from the R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific during 2016.

Principal Investigator:

Mak A. Saito (Woods Hole Oceanographic Institution, WHOI)

BCO-DMO Data Manager:

Hannah Ake (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Amber D. York (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Project:

The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean (ProteOMZ (Proteomics in an Oxygen Minimum Zone))

Current State:

Final no updates expected

Version:

Deployment Synonyms:

ProteOMZ

Version Date:

2018-05-25

Data URL:

https://www.bco-dmo.org/dataset-deployment/737665/data

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Description

These data are part of the Ocean Protein Portal "ProteOMZ" dataset (https://proteinportal.whoi.edu/; Saito et al., 2019).

Methods & Sampling

Dataset acquisition description

Data Processing Description

Dataset Processing Description

The raw mass spectra files were searched against SEQUEST within Proteome Discoverer v2.2 software. Processed files were then loaded into Proteome Software and protein and peptide reports as well as and fasta files were exported. The files were modified slightly to map to the Protein Portal data model for submission to BCO-DMO.

BCO-DMO Data Manager Notes:
* data version 1: 2018-05-25 replaced by data version 2: 2019-01-02 which is a new version of the .fasta file which includes more proteins not present in the previous version.

More information about this dataset deployment

Funding

Award Number	Funding Source
GBMF3782	Gordon and Betty Moore Foundation: Marine Microbiology Initiative
R/V Falkor 160115 SOI ProteOMZ Expedition	Schmidt Ocean Institute

Instruments

None available yet

Parameters

None available yet

Database

Contribute Data

Dataset: ProteOMZ identified protein sequences
Deployment: FK160115

Dataset acquisition description

Dataset Processing Description

Database

Contribute Data

Dataset: ProteOMZ identified protein sequencesDeployment: FK160115

Dataset acquisition description

Dataset Processing Description

Dataset: ProteOMZ identified protein sequences
Deployment: FK160115