Dataset: Heatwave Experiment: Survivorship Probability

Name: Coral survivorship tracked during a heatwave experiment done September to November 2018 using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i.
Published: 2023-01-31
Keywords: oceans

Cite This Dataset

DOI:10.26008/1912/bco-dmo.884551.1

Spatial Extent: N:21.477194 E:-157.786861 S:21.429417 W:-157.833667

Temporal Extent: 2018-09-22 - 2018-11-17

Project:

NSFOCE-BSF: COLLABORATIVE RESEARCH: Elucidating adaptive potential through coral holobiont functional integration (Holobiont Integration)

Co-Principal Investigator:

Hollie Putnam (University of Rhode Island, URI)

Student:

Emma Strand (University of Rhode Island, URI)

BCO-DMO Data Manager:

Karen Soenen (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2023-01-31

Restricted:

Validated:

Yes

Current State:

Final no updates expected

Coral survivorship tracked during a heatwave experiment done September to November 2018 using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i.

Abstract:

Two common reef-building corals, Montipora capitata and Pocillopora acuta, were collected from six sites in Kāne'ohe Bay, O'ahu, Hawai'i. Fragments were allowed to acclimate in experimental tanks for two weeks prior to exposure to one of the following four treatments: Ambient Temperature Ambient pCO2 (ATAC), Ambient Temperature High pCO2 (ATHC), High Temperature Ambient pCO2 (HTAC), and High Temperature High pCO2 (HTHC). The treatment period lasted for a two month period, starting on September 22nd, 2018 and lasting through November 17th, 2018. Following the stress period, coral fragments were exposed to a two-month recovery period in ambient conditions. Survivorship was tracked every day and analyzed for survivorship probability. This dataset includes the raw data of tracked survivorship.

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Archival Copy

Version Date	Archive	Persistent Identifier	Date Assigned
2023-01-31	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.26008/1912/bco-dmo.884551.1	2023-01-31

Methods & Sampling

Corals sampled at six reefs within Kāne'ohe Bay, O'ahu, Hawai'i:

1.) USA: Hawaii HIMB: 21.436056, -157.786861
2.) USA: Hawaii Reef.11.13: 21.450806, -157.794944
3.) USA: Hawaii Reef.35.36: 21.473889, -157.833667
4.) USA: Hawaii Reef.18: 21.450806, -157.811139
5.) USA: Hawaii Lilipuna.Fringe: 21.429417, -157.791111
6.) USA: Hawaii Reef.42.43: 21.477194, -157.826889

Experiment conducted at the Hawai'i Institute of Marine Biology.

Survivorship was tracked daily throughout the two-month stress and two-month recovery period using a binary score for dead versus alive. Alive was defined as any fragment with live tissue.

Data Processing Description

Survivorship probability was calculated with a cox proportional hazards mixed-effects model fit by maximum likelihood using the coxpH function in the coxme package (version 2.2-16; Therneau and Grambsch 2013) with temperature and pCO2 treatments as fixed effects and plug ID as a random factor.

Data Files

File
heatwave_survivorship.csv (Comma Separated Values (.csv), 488.02 KB) MD5:13687f985b9793b43b9f85f80ced5ed0 Primary data file for dataset ID 884551

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-1756623

Deployments

None available yet

Instruments

None available yet

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
ORIGIN	Site number where that coral fragment was collected	unitless	site
Site_Name	Site name where that coral fragment was collected	unitless	site
Site_Latitude	Latitude of coral sampling site, south is negative	decimal degrees	lat
Site_Longitude	Longitude of coral sampling site, west is negative	decimal degrees	lon
POINT	Point number at the site where the coral fragment was collected	unitless	site
SITE_ID	Coral fragment ID in the field prior to being affixed to plugs and assigned a PLUG.ID	unitless	site
Species	Coral host species: Montipora capitata or Pocillopora acuta	unitless	species
COLLECT_DATE	Date of sample collection from the reef	unitless	date
PLUG_ID	The individual coral fragment ID number	unitless	sample
Tank	The tank number that coral fragment was sampled from (12 options; 3 tanks per treatment).	unitless	tank
Acclimation_End	Status of that coral fragment at the end of the 2 week acclimation period.	unitless	sample_descrip
Day_0	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_1	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_2	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_3	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_4	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_5	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_6	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_7	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_8	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_9	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_10	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_11	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_12	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_13	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_14	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_15	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_16	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_17	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_18	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_19	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_20	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_21	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_22	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_23	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_24	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_25	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_26	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_27	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_28	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_29	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_30	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_31	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_32	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_33	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_34	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_35	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_36	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_37	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_38	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_39	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_40	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_41	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_42	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_43	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_44	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_45	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_46	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_47	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_48	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_49	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_50	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_51	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_52	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_53	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_54	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_55	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_56	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_57	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_58	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_59	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_60	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_61	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_62	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_63	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_64	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_65	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_66	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_67	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_68	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_69	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_70	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_71	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_72	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_73	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_74	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_75	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_76	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_77	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_78	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_79	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_80	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_81	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_82	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_83	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_84	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_85	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_86	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_87	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_88	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_89	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_90	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_91	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_92	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_93	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_94	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_95	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_96	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_97	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_98	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_99	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_100	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_101	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_102	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_103	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_104	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_105	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_106	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_107	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_108	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_109	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_110	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_111	Status of that coral fragment each day of the experiment.	unitless	sample_descrip
Day_112	Status of that coral fragment each day of the experiment.	unitless	sample_descrip

Database

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Dataset: Heatwave Experiment: Survivorship Probability