Parameter: sampling_method

Short Description: sampling_method
Short Name: sampling_method
Official Name: sampling_method
Units: dimensionless
No Data Value: nd

Description

Method used to collect sample.


DatasetPI-Supplied DescriptionPI-Supplied Name
16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020Description of library layout LibraryLayout
16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020Library selection LibrarySelection
16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020Library source LibrarySource
16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020Sample extraction process samp_mat_process
Information about sequences of coral, Acropora cervicornis, collected from host colonies at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys in November and December 2019Sequencing design description Design
Information about sequences of coral, Acropora cervicornis, collected from host colonies at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys in November and December 2019Library layout ("PAIRED") Library_Layout
Information about sequences of coral, Acropora cervicornis, collected from host colonies at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys in November and December 2019Library selection method ("PCR") Library_Selection
Information about sequences of coral, Acropora cervicornis, collected from host colonies at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys in November and December 2019Type of library prep ("AMPLICON") Library_Strategy
Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015Library layout ("PAIRED") library_layout
Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015Library selection method ("PCR") library_selection
Percent cover of algal habitat types on a by-transect and/or subsample basis recorded during emergent and rapid emergent surveys conducted in the subtidal zone of northern California, Sonoma and Mendocino counties, from 1999 to 2023There are two survey types: Emergent surveys do not involve rolling over boulders or picking up rocks and do involve looking in rock crevices and under rocky overhangs. Transect-30m x 2 m (Emergent) - pre-2016. Transect-30m x 2 m (Rapid Emergent) - post-2017 SurveyType
Accessions for clones of heterotrophic "helper" bacterium Alteromonas EZ55 grown at elevated and ambient CO2.description of the methods used to create the sequencing library design_description
Asteroids and Holothurians Table 1: Asteroid species - Presence and absence of Asteroid species by station in the deep-sea East and West Atlantic from 1977-1999 (Deep Sea Benthic Dynamics project)Type of gear used for sampling Gear code Gear type BN1.5/3F Epibenthic sled BN1.5/3M Epibenthic sled BN1.5/C Epibenthic sled BN1.5/P Epibenthic sled BNC Epibenthic sled BNF Epibenthic sled GT Otter trawl OT Otter trawl OTSB14 Otter trawl OTSB14D Otter trawl ST Otter trawl Gear
Asteroids and Holothurians: Table 2: Holothurian species - Number of individuals by station in the deep-sea East and West Atlantic from 1977-1985 (Deep Sea Benthic Dynamics project)Type of gear used for sampling Gear code Gear type BN1.5/3F Epibenthic sled BN1.5/3M Epibenthic sled BN1.5/C Epibenthic sled BN1.5/P Epibenthic sled BNC Epibenthic sled BNF Epibenthic sled GT Otter trawl OT Otter trawl OTSB14 Otter trawl OTSB14D Otter trawl ST Otter trawl Gear
Jason sample event log from the R/V Atlantis (Alvin AT26-15) cruise in the Gulf of Mexico and Florida Escarpment during June 2012 (SEEPC project)method used by ROV to collect sample sampling_method
Benthic fluxes of solutes measured by in-situ benthic flux chambers along two depth transects in the Santa Barbara Basin during November 219Chamber volume determination; either sensor (DI-water injection-based) or visual Chamber_Volume_Determination
Benthic fluxes of solutes measured by in-situ benthic flux chambers along two depth transects in the Santa Barbara Basin during November 219Type of incubation; either 15N experiment or natural flux Type_of_Incubation
Biogeochemical and microbial parameters collected during spatial surveys on a coral reef at Mo'orea's North Shore (French Polynesia) in September 2017, May 2019, and April 2022Sampling strategy. Either "Spatial survey" and "Lagrangian survey". Spatial Survey = Samples were collected closely in time on Mo'orea's North Shore (French Polynesia) to provide a synoptic snapshot of the reef environment. Lagrangian Survey = Samples were collected during Lagrangian transect deployments. These followed the linear water flow from ocean-facing forereefs over a reef crest to the backreef lagoons. Sampling_Strategy
Biological samples of Isotope concentrations of Cesium 134 and 137, Silver 110m, and Potassium 40 from cruise KOK1108 in June 2011 in the Western equatorial Pacific and Kurushio Extension (Fukushima Radionuclide Levels project)method used to collect sample sampling_method
Bivalves Table 3: Presence and absence of Bivalve species from the North American Basin in the deep-sea East and West Atlantic from 1997-1999 (Deep Sea Benthic Dynamics project)Type of gear used for sampling Gear code Gear type BN1.5/3F Epibenthic sled BN1.5/3M Epibenthic sled BN1.5/C Epibenthic sled BN1.5/P Epibenthic sled BNC Epibenthic sled BNF Epibenthic sled GT Otter trawl OT Otter trawl OTSB14 Otter trawl OTSB14D Otter trawl ST Otter trawl GEAR
Bivalves Table 4: Information on sampling stations from the Western European Basin in the deep-sea East and West Atlantic from 1997-1999 (Deep Sea Benthic Dynamics project)Type of gear used for sampling Gear code Gear type BN1.5/3F Epibenthic sled BN1.5/3M Epibenthic sled BN1.5/C Epibenthic sled BN1.5/P Epibenthic sled BNC Epibenthic sled BNF Epibenthic sled GT Otter trawl OT Otter trawl OTSB14 Otter trawl OTSB14D Otter trawl ST Otter trawl GEAR
Metadata associated with genomic and genetic data collected from organisms obtained on BOWLs landers, R/V Oceanus June 22-27, 2014 (BOWLS project)The genomic method used to analyze specimen: RAD_seq = restriction site-associated DNA sequencing (RADSeq); mt_genome = mitochondrial genome sequencing; Endosymbiont_genome = Endosymbiont genome was sequenced genomic_method
Accession numbers for metagenome-assembled genomes (MAGs) from samples collected in 2018 on R/V Thompson cruise TN350 at the Upper and Lower Cones, Upper Caldera Wall and NW Caldera, Brothers VolcanoSoftware used to assemble contigs from metagenome reads Assembly_program
Accession numbers for metagenome-assembled genomes (MAGs) from samples collected in 2018 on R/V Thompson cruise TN350 at the Upper and Lower Cones, Upper Caldera Wall and NW Caldera, Brothers VolcanoSoftware used to bin MAGs from contigs Binning_program
16S rRNA sequences from subsurface microbial communities (Blackwood Sinkhole)how the sample was analyzed design_description
Sediment porosity collected from R/V Oceanus cruise OC1906A and R/V Sikuliaq cruise SKQ202016S off the coast of California in 2019 and 2020How the sample was collected: cs = core sectioning; sp = pre-drilled holes in the multi-core tubes samp
Carbonate chemistry in Mission Aransas Estuary from May 2014 to Feb 2017 and Dec 2018 to Feb 2020pH method (1=spectrophotometric, 4=potentiometric) pH_Label
Samples sequenced from chemosynthetic biofilm communities in deep-sea hydrothermal vents collected on the R/V Atlantis AT26-10 in the East Pacific Rise, Pacific Ocean from 2013 - 2014 (Microbial Communities at Deep-Sea Vents project)how sample was collected collection_method
Images and associated metadata of individually classified particles imaged and quantified in sediment trap gel layers collected on four research cruises conducted between 2015 and 2018Illumination type (Oblique or Brightfield) Type
Coccolithophore counts from polarized microscopy birefringence measurements of samples collected in the Northwest Atlantic during R/V Endeavor cruise EN616 in July 2018Gear used to collect the water and coccolithophore samples Gear
Comparison of abundance-based growth rate predicted following Q10 model, Eppley’s equation, and the linear model obtained in Franzè and Menden-Deuer, 2020Equation applied to predict growth Equation_applied
Ambient concentrations of acetate, glycerol, and mannitol measured from samples collected during R/V Endeavor cruise EN616 in the northwest Atlantic in July 2018 Gear used to collect the water and coccolithophore samples Gear
Archived Oyster Samples Collected from the Delaware Bay from 2018 to 2021 (SEGO project)Method of oyster collection method
Diurnal gnathiid consumption in fish sampled from shallow reef sites in Caribbean waters from May 2017 to Sep 2021Method used to collect sample (lavage, dissection, or poop) Method
DOP concentration observations from the global ocean between 1990 and 2021 (DOP N2 fixation and export production project)methods employed to measure DOP concentration method
Log response ratios to seagrass edge and fragmentation effects from peer-reviewed literatureData collection method (e.g., gear type) used by the original publication author(s) collected
Hydrography and environmental conditions measured with CTD at nine stations during R/V Endeavor cruise EN616 in July 2018Gear used to collect the water and coccolithophore samples Gear
Table of taxonomic hierarchy and the sampling method for organisms collection in Aleutian Island kelp forests, June 2016 and July 2017 (Kelp Forest Ecosystem Engineer Loss project)taxonomic method Sampling_method
Metagenomic, metatranscriptomic, and single cell sequencing data from an Environmental Sample Processor deployment in Monterey Bay, CA in 2016.assembly method Assembly_Method
Sampling and accession information for extracellular reef seawater metabolites collected from the Jardines de la Reina reef-system, Cuba in November of 2017Type of ionization used - either positive or negative Ion_mode
Sampling and accession information for extracellular reef seawater metabolites collected from the Jardines de la Reina reef-system, Cuba in November of 2017Type of method used - either targeted or untargeted Profiling_mode
Fish observations corresponding to one fish or a group of conspecific fish taken in Point Lobos, California between 1997 and 2007.Survey method; SBTL_fish = subtidal visual surveys method
Weekly survey of fish sold by the roadside in Moorea, French Polynesia in 2014 and 2015 (Coral reef fishery project)Primary gear used in fishing gear_1
Weekly survey of fish sold by the roadside in Moorea, French Polynesia in 2014 and 2015 (Coral reef fishery project)Additional gear used (if any) gear_2
Weekly survey of fish sold by the roadside in Moorea, French Polynesia in 2014 and 2015 (Coral reef fishery project)Additional gear used (if any) gear_3
FlowCAM enumeration of phytoplankton classes from samples taken during R/V Endeavor cruise EN616 in July 2018Gear used to collect the water and coccolithophore samples Gear
Bleaching and environmental data for global coral reef sites from 1980-2020Source of data set Data_Source
Element quotas of individual phytoplankton cells from samples collected on the US GEOTRACES Arctic cruise GN01 (HLY1502) on USCGC Healy in August-October 2015Material of TEM grid used for analysis: SiN (silicon nitride) or Au (gold) GridType
HADES-K Specify Export 201305190833 final from R/V Thomas G. Thompson TN309 from the Kermadec Trench adjacent to New Zealand; 2014 (HADES project)Sampling Gear Gear
Pigment concentrations derived from High-Performance Liquid Chromatography (HPLC) analysis from samples collected during the Tara Pacific expedition from 2016-2018Name of sampling method or instrument Method_or_Device