| 16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020 | Description of library layout
| LibraryLayout |
| 16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020 | Library selection
| LibrarySelection |
| 16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020 | Library source
| LibrarySource |
| 16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020 | Sample extraction process
| samp_mat_process |
| Information about sequences of coral, Acropora cervicornis, collected from host colonies at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys in November and December 2019 | Sequencing design description
| Design |
| Information about sequences of coral, Acropora cervicornis, collected from host colonies at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys in November and December 2019 | Library layout ("PAIRED")
| Library_Layout |
| Information about sequences of coral, Acropora cervicornis, collected from host colonies at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys in November and December 2019 | Library selection method ("PCR")
| Library_Selection |
| Information about sequences of coral, Acropora cervicornis, collected from host colonies at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys in November and December 2019 | Type of library prep ("AMPLICON")
| Library_Strategy |
| Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015 | Library layout ("PAIRED")
| library_layout |
| Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015 | Library selection method ("PCR")
| library_selection |
| Percent cover of algal habitat types on a by-transect and/or subsample basis recorded during emergent and rapid emergent surveys conducted in the subtidal zone of northern California, Sonoma and Mendocino counties, from 1999 to 2023 | There are two survey types: Emergent surveys do not involve rolling over boulders or picking up rocks and do involve looking in rock crevices and under rocky overhangs. Transect-30m x 2 m (Emergent) - pre-2016. Transect-30m x 2 m (Rapid Emergent) - post-2017
| SurveyType |
| Accessions for clones of heterotrophic "helper" bacterium Alteromonas EZ55 grown at elevated and ambient CO2. | description of the methods used to create the sequencing library
| design_description |
| Asteroids and Holothurians Table 1: Asteroid species - Presence and absence of Asteroid species by station in the deep-sea East and West Atlantic from 1977-1999 (Deep Sea Benthic Dynamics project) | Type of gear used for sampling
Gear code Gear type
BN1.5/3F Epibenthic sled
BN1.5/3M Epibenthic sled
BN1.5/C Epibenthic sled
BN1.5/P Epibenthic sled
BNC Epibenthic sled
BNF Epibenthic sled
GT Otter trawl
OT Otter trawl
OTSB14 Otter trawl
OTSB14D Otter trawl
ST Otter trawl
| Gear |
| Asteroids and Holothurians: Table 2: Holothurian species - Number of individuals by station in the deep-sea East and West Atlantic from 1977-1985 (Deep Sea Benthic Dynamics project) | Type of gear used for sampling
Gear code Gear type
BN1.5/3F Epibenthic sled
BN1.5/3M Epibenthic sled
BN1.5/C Epibenthic sled
BN1.5/P Epibenthic sled
BNC Epibenthic sled
BNF Epibenthic sled
GT Otter trawl
OT Otter trawl
OTSB14 Otter trawl
OTSB14D Otter trawl
ST Otter trawl
| Gear |
| Jason sample event log from the R/V Atlantis (Alvin AT26-15) cruise in the Gulf of Mexico and Florida Escarpment during June 2012 (SEEPC project) | method used by ROV to collect sample
| sampling_method |
| Benthic fluxes of solutes measured by in-situ benthic flux chambers along two depth transects in the Santa Barbara Basin during November 219 | Chamber volume determination; either sensor (DI-water injection-based) or visual
| Chamber_Volume_Determination |
| Benthic fluxes of solutes measured by in-situ benthic flux chambers along two depth transects in the Santa Barbara Basin during November 219 | Type of incubation; either 15N experiment or natural flux
| Type_of_Incubation |
| Biogeochemical and microbial parameters collected during spatial surveys on a coral reef at Mo'orea's North Shore (French Polynesia) in September 2017, May 2019, and April 2022 | Sampling strategy. Either "Spatial survey" and "Lagrangian survey".
Spatial Survey = Samples were collected closely in time on Mo'orea's North Shore (French Polynesia) to provide a synoptic snapshot of the reef environment.
Lagrangian Survey = Samples were collected during Lagrangian transect deployments. These followed the linear water flow from ocean-facing forereefs over a reef crest to the backreef lagoons.
| Sampling_Strategy |
| Biological samples of Isotope concentrations of Cesium 134 and 137, Silver 110m, and Potassium 40 from cruise KOK1108 in June 2011 in the Western equatorial Pacific and Kurushio Extension (Fukushima Radionuclide Levels project) | method used to collect sample
| sampling_method |
| Bivalves Table 3: Presence and absence of Bivalve species from the North American Basin in the deep-sea East and West Atlantic from 1997-1999 (Deep Sea Benthic Dynamics project) | Type of gear used for sampling
Gear code Gear type
BN1.5/3F Epibenthic sled
BN1.5/3M Epibenthic sled
BN1.5/C Epibenthic sled
BN1.5/P Epibenthic sled
BNC Epibenthic sled
BNF Epibenthic sled
GT Otter trawl
OT Otter trawl
OTSB14 Otter trawl
OTSB14D Otter trawl
ST Otter trawl
| GEAR |
| Bivalves Table 4: Information on sampling stations from the Western European Basin in the deep-sea East and West Atlantic from 1997-1999 (Deep Sea Benthic Dynamics project) | Type of gear used for sampling
Gear code Gear type
BN1.5/3F Epibenthic sled
BN1.5/3M Epibenthic sled
BN1.5/C Epibenthic sled
BN1.5/P Epibenthic sled
BNC Epibenthic sled
BNF Epibenthic sled
GT Otter trawl
OT Otter trawl
OTSB14 Otter trawl
OTSB14D Otter trawl
ST Otter trawl
| GEAR |
| Metadata associated with genomic and genetic data collected from organisms obtained on BOWLs landers, R/V Oceanus June 22-27, 2014 (BOWLS project) | The genomic method used to analyze specimen:
RAD_seq = restriction site-associated DNA sequencing (RADSeq);
mt_genome = mitochondrial genome sequencing;
Endosymbiont_genome = Endosymbiont genome was sequenced
| genomic_method |
| Accession numbers for metagenome-assembled genomes (MAGs) from samples collected in 2018 on R/V Thompson cruise TN350 at the Upper and Lower Cones, Upper Caldera Wall and NW Caldera, Brothers Volcano | Software used to assemble contigs from metagenome reads
| Assembly_program |
| Accession numbers for metagenome-assembled genomes (MAGs) from samples collected in 2018 on R/V Thompson cruise TN350 at the Upper and Lower Cones, Upper Caldera Wall and NW Caldera, Brothers Volcano | Software used to bin MAGs from contigs
| Binning_program |
| 16S rRNA sequences from subsurface microbial communities (Blackwood Sinkhole) | how the sample was analyzed
| design_description |
| Sediment porosity collected from R/V Oceanus cruise OC1906A and R/V Sikuliaq cruise SKQ202016S off the coast of California in 2019 and 2020 | How the sample was collected: cs = core sectioning; sp = pre-drilled holes in the multi-core tubes
| samp |
| Carbonate chemistry in Mission Aransas Estuary from May 2014 to Feb 2017 and Dec 2018 to Feb 2020 | pH method (1=spectrophotometric, 4=potentiometric)
| pH_Label |
| Samples sequenced from chemosynthetic biofilm communities in deep-sea hydrothermal vents collected on the R/V Atlantis AT26-10 in the East Pacific Rise, Pacific Ocean from 2013 - 2014 (Microbial Communities at Deep-Sea Vents project) | how sample was collected
| collection_method |
| Images and associated metadata of individually classified particles imaged and quantified in sediment trap gel layers collected on four research cruises conducted between 2015 and 2018 | Illumination type (Oblique or Brightfield)
| Type |
| Coccolithophore counts from polarized microscopy birefringence measurements of samples collected in the Northwest Atlantic during R/V Endeavor cruise EN616 in July 2018 | Gear used to collect the water and coccolithophore samples
| Gear |
| Comparison of abundance-based growth rate predicted following Q10 model, Eppley’s equation, and the linear model obtained in Franzè and Menden-Deuer, 2020 | Equation applied to predict growth
| Equation_applied |
| Ambient concentrations of acetate, glycerol, and mannitol measured from samples collected during R/V Endeavor cruise EN616 in the northwest Atlantic in July 2018 | Gear used to collect the water and coccolithophore samples
| Gear |
| Archived Oyster Samples Collected from the Delaware Bay from 2018 to 2021 (SEGO project) | Method of oyster collection
| method |
| Diurnal gnathiid consumption in fish sampled from shallow reef sites in Caribbean waters from May 2017 to Sep 2021 | Method used to collect sample (lavage, dissection, or poop)
| Method |
| DOP concentration observations from the global ocean between 1990 and 2021 (DOP N2 fixation and export production project) | methods employed to measure DOP concentration
| method |
| Log response ratios to seagrass edge and fragmentation effects from peer-reviewed literature | Data collection method (e.g., gear type) used by the original publication author(s)
| collected |
| Hydrography and environmental conditions measured with CTD at nine stations during R/V Endeavor cruise EN616 in July 2018 | Gear used to collect the water and coccolithophore samples
| Gear |
| Table of taxonomic hierarchy and the sampling method for organisms collection in Aleutian Island kelp forests, June 2016 and July 2017 (Kelp Forest Ecosystem Engineer Loss project) | taxonomic method
| Sampling_method |
| Metagenomic, metatranscriptomic, and single cell sequencing data from an Environmental Sample Processor deployment in Monterey Bay, CA in 2016. | assembly method
| Assembly_Method |
| Sampling and accession information for extracellular reef seawater metabolites collected from the Jardines de la Reina reef-system, Cuba in November of 2017 | Type of ionization used - either positive or negative
| Ion_mode |
| Sampling and accession information for extracellular reef seawater metabolites collected from the Jardines de la Reina reef-system, Cuba in November of 2017 | Type of method used - either targeted or untargeted
| Profiling_mode |
| Fish observations corresponding to one fish or a group of conspecific fish taken in Point Lobos, California between 1997 and 2007. | Survey method; SBTL_fish = subtidal visual surveys
| method |
| Weekly survey of fish sold by the roadside in Moorea, French Polynesia in 2014 and 2015 (Coral reef fishery project) | Primary gear used in fishing
| gear_1 |
| Weekly survey of fish sold by the roadside in Moorea, French Polynesia in 2014 and 2015 (Coral reef fishery project) | Additional gear used (if any)
| gear_2 |
| Weekly survey of fish sold by the roadside in Moorea, French Polynesia in 2014 and 2015 (Coral reef fishery project) | Additional gear used (if any)
| gear_3 |
| FlowCAM enumeration of phytoplankton classes from samples taken during R/V Endeavor cruise EN616 in July 2018 | Gear used to collect the water and coccolithophore samples
| Gear |
| Bleaching and environmental data for global coral reef sites from 1980-2020 | Source of data set
| Data_Source |
| Element quotas of individual phytoplankton cells from samples collected on the US GEOTRACES Arctic cruise GN01 (HLY1502) on USCGC Healy in August-October 2015 | Material of TEM grid used for analysis: SiN (silicon nitride) or Au (gold)
| GridType |
| HADES-K Specify Export 201305190833 final from R/V Thomas G. Thompson TN309 from the Kermadec Trench adjacent to New Zealand; 2014 (HADES project) | Sampling Gear
| Gear |
| Pigment concentrations derived from High-Performance Liquid Chromatography (HPLC) analysis from samples collected during the Tara Pacific expedition from 2016-2018 | Name of sampling method or instrument
| Method_or_Device |
©2020 Biological and Chemical Oceanography Data Management Office.