Parameter: cell_concentration

Short Description:

cell_concentration

Short Name:

cell_concentration

Official Name:

cell_concentration

Units:

various

Graphable:

Yes

No Data Value:

Description

Concentration of cells; often determined by spectrophotometry, flow cytometry, or using a microscope.

Datasets associated with this parameter

Dataset Name	Brief Description	Project	PI-Supplied Parameter Name
AE1620 bottles: Biogeochemical and Microbial data	bottle data AE1620	Bacterial DOC cycling	Bact
AE1703 bottles: Biogeochemical and Microbial data	bottle data AE1703	Bacterial DOC cycling	Bact
Auto-induction in Marine Diatoms	Results from laboratory experiments testing autoinduction in marine diatoms, Thalassiosira pseudonana and Phaeodactylum tricornutum	PhytoplanktonQS	cell_conc
Bacterial cell counts	Bacterial cell counts during CDOM monoculture experiment	PlankDOM	concentration_uL, concentration_mL
Bleached Octocoral Symbiont Cell Counts	Bleached Octocoral Symbiont Cell Counts	Octocoral symbiont diversity	count_avg, count_stdev, total_cells_in_sample, cells_vol_tissue
Breviolum antillogorgium cell counts	Cell counts for B. antillogorgium cultures	Host Symbiont Temp Response	Count_1, Count_2, Count_3, Count_4, Count_5, Count_6, Mean
Cell counts - water	Cell counts from Mariana and Kermadec trenches, 2014	Mariana Perspectives	Cell_counts_mL
Cell counts in dilution experiment	Prochlorococcus and Synechococcus cell counts in dilution experiment treatments.	Picophytoplankton_Regulation	Pro, Syn
Cell counts in polyps – Fall 2018 experiment	Cell counts in coral polyps	Host Symbiont Temp Response	Cells_ml, Cells_polyp
Chemical Defenses-1: Flores et al. 2012	Chemical Defenses-1: Flores et al. 2012	Chemical Defenses	Densitiy
Chemical Defenses-4: Griffin et al. 2019	Chemical Defenses-4: Griffin et al. 2019	Chemical Defenses	Cell_Number
Chemical Defenses-5: Park and Dam 2021	Chemical Defenses-5: Park and Dam 2021	Chemical Defenses	Cell_Number
Coral reef seawater microbial communities	Coral reef seawater microbial communities	Coral Exometabolomes	Prochlorococcus_cells_mL, Synechococcus_cells_mL, Picoeukaryotes_cells_mL, Unpigmented_cells_cells_mL
Coral-bacterioplankton data from mesocosm experiments	Bacterioplankton data from coral and coral mucus aquaria experiments.	Coral Microbial Relationships	DAPI_count, nonPigmentPico, synechococcus, picoeukaryote, lowHeterotrophicBac, highHeterotrophicBac, SAR11, rhodobacteracea, alteromonas, vibrio, thaumarchaeota, euryarchaeota
Culture Data	Symbiodinium microadriaticum cultures	Host Symbiont Temp Response	CellsPermL
Dendraster_Grazing_OA_Expt2017	Dendraster_Grazing_OA_Expt2017	Climate stressors on larvae	cell_concentration
DEPRECATED: Optical properties	DEPRECATED: Optical properties 2016 & 2017	Varadero Reef	Symb_density
Dinoflagellate culturing	Size and chemical responses of two dinoflagellate species used in natural high light exposure experiments.	Protist signaling	Replicate_cell_counts
Emiliania huxleyi Chl-a, POC, cell volumes	Chlorophyll-a, POC, and cell volume of E. huxleyi at 3 pCO2 levels	E Hux Response to pCO2	cell_concentration
Emiliania huxleyi dilution calculations	Emiliania huxleyi growth rates under different pCO2 levels	E Hux Response to pCO2	day1_concentration_init, day1_concentration_dil, day2_concentration_init
EN556 LV incubations: DOC, bacterial cell concentration, and bacterial production	Large volume incubation: DOC, bacterial cell concentration and production, EN556	Patterns of activities	cells_per_mL
EN556 seawater measurements and initial conditions	Bulk water experiment: initial nutrients, bacterial cell concentration and production, EN556	Patterns of activities	cells_per_mL
Exudate Uptake Incubations - Microbial Abundances (Flow Cytometry)	Exudate Uptake Incubations - Microbial Abundances (Flow Cytometry)	Coral Exometabolomes	Unpigmented_cells
Fe-Labeling Expt: E.coli and phage T4 or T5	Fe-Labeling Expt: E.coli and phage T4 or T5	Fe-Virus	phage_VPL_ml
Field domoic acid and copepods		CLASiC	Pnitz_density
Flow Cytometry Results		Heat Tolerant Corals	Negative_Events, Negative_Sym_Conc, Negative_Cells, ALLEVENTS_Conc, SYMBIODINIUM_Conc, Cell_Count, Negative_Total_Count
FlowCAM imaging cytometer data from EN616 cruise		Cocco-Mix	Round_4_to_12um, Ovoid_4_to_12um, Dinoflagellates, Ciliates, Diatoms, Silicoflagellates, Other_Cells, Total, Small_0_to_4um
Grazing experiment 2 and 3: daily cell counts	Daily cell count data for low to high pCO2 acclimated E. huxleyi	E Hux Response to pCO2	cell_count
Grazing experiment 4: Carbon and Nitrogen	Carbon and Nitrogen data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	cell_count, total_cells
Grazing experiment 4: cell carbohydrates	Cellular carbohydrate data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	cell_ml_extract, cell_ml_culture
Grazing experiment 4: Chlorophyll a	Chlorophyll-a data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	cell_concentration
Grazing experiment 5: Carbon and Nitrogen	Carbon and Nitrogen data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	total_cells
Grazing experiment 5: cell carbohydrates	Cellular carbohydrate data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	cell_ml, cells_per_ml_extract
Grazing experiment 5: Chlorophyll a	Chlorophyll a data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	cell_concentration
Grazing experiment 5: long term grazing and growth by Oxyrrhis	Long term ingestion and growth by Oxyrrhis for low-high pCO2 acclimated Rhodomonas sp.	E Hux Response to pCO2	Oxyrrhis_per_ml_day_0, Oxyrrhis_per_ml_day_1, Rhodo_per_ml_with_Oxyrrhis_day_0, Rhodo_per_ml_with_Oxyrrhis_day_1, Rhodo_per_ml_control_day_0, Rhodo_per_ml_control_day_1
Grazing experiment 6: Carbon and Nitrogen	Carbon and Nitrogen data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	total_cells
Grazing experiment 6: cell carbohydrates	Cellular carbohydrate data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	cell_ml, cells_per_ml_extract
Grazing experiment 6: cell lipids	Cellular lipid data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	cells_filtered_ml
Grazing experiment 6: Chlorophyll a	Chlorophyll a data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	cell_concentration
Grazing experiment 6: long term grazing by Coxliella and growth	Long term ingestion and growth by Coxliella for low-high pCO2 acclimated Rhodomonas sp.	E Hux Response to pCO2	Coxliella_per_ml_day_0, Coxliella_per_ml_day_1, Rhodo_per_ml_with_Coxliella_day_0, Rhodo_per_ml_with_Coxliella_day_1, Rhodo_per_ml_control_day_0, Rhodo_per_ml_control_day_1
Grazing experiment 7: Carbon and Nitrogen	Cellular carbon and Nitrogen data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	total_cells
Grazing experiment 7: cell carbohydrates	Cellular carbohydrate data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	cell_ml, cells_per_ml_extract
Grazing experiment 7: cell lipids	Cellular lipid data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	cells_filtered_ml
Grazing experiment 7: Chlorophyll a	Chlorophyll-a data for low-high pCO2 acclimated Rhodomonas sp. cultures	E Hux Response to pCO2	cell_concentration
Grazing experiment 7: long term grazing by Gyrodinium and growth	Long term ingestion and growth by Gyrodinium for low-high pCO2 acclimated Rhodomonas sp.	E Hux Response to pCO2	Rhodo_per_ml_control_day_1, Gyrodinium_per_ml_day_0, Gyrodinium_per_ml_day_1, Rhodo_per_ml_with_Gyrodinium_day_0, Rhodo_per_ml_with_Gyrodinium_day_1, Rhodo_per_ml_control_day_0
Growth rate of Pleurochrysis carterae	Experimental data on growth rates of Pleurochrysis carterae	OA_Copes_Coccoliths	cell_density, ln_cellDensity
Growth rates and bulk isotope values	Growth rates, bulk isotope values, elemental composition	Amino Acid Sediment 15N	Cell_density
Halomethane concentrations in cell culture	Concentrations of CH3Br, CH3I, CH3Cl, and CH3Br3 in cell culture	Volatile_Hydrocarbons	cells_per_ml
Heterosigma akashiwo acclimation	Heterosigma akashiwo acclimation - BioProject PRJNA377729	P-ExpEv	samp_size
HHQ Flow Cytometry	HHQ Flow cytometry	HHQSignals	Synechococcus, Picoeukaryotes, Nanoeukaryotes, Total_Phytoplankton_lt_15um, Bacteria
Incubation in diffuse flow vent fluids - Crab Spa	Results of on-board incubations of microbes in diffuse flow vent fluids collected from Crab Spa and Alvinella patch	Microbial Communities at Deep-Sea Vents	cell_concentration
Incubations: cell abundance, carbon fixation rates, nitrates	Carbon fixation rates Crab Spa	vent O2 NO3 roles	cell_abund
Initial prey abundance and biomass: JEMBE 2017	Initial prey abundance and biomass: JEMBE 2017	EAGER: Copepod nauplii	prey_concentration, prey_concentration_se
ISOHgII Rates	Hg(II) photoreduction rates and stable isotope enrichment	Phytoplankton MeHg	Init_cell_density, Final_cell_density
ISOMeHg Rates	MeHg photoreduction rates and stable isotope enrichment	Phytoplankton MeHg	Init_cell_density
Mesocosm warming experiment quantitative PCR inhibition controls		Seagrass and Oyster Ecosystems	cells_uL_sample, cells_uL_pos_cntrl, cells_uL_inhibition
Mesocosm warming experiment seagrass metrics		Seagrass and Oyster Ecosystems	cells_per_extraction, cells_per_mg
Metabolite Uptake Incubations - Microbial Abundances (Flow Cytometry)	Metabolite Uptake Incubations - Microbial Abundances (Flow Cytometry)	Coral Exometabolomes	Unpigmented_cells
Microbial abundance	Microbial abundance	Salp Food Web Ecology	PEUK
Microbial incubation diversity and geochemistry	Microbial diversity and geochemistry of marine sediment mesocosm, Cape lookout bight, North Carolina	Subsurface Organic Breakdown, IODP-347 Microbial Quantification	total_cells
Minutocellus polymorphus TEP and Microaggregate Formation: Cell Abundance		Marine Plankton Aggregation	Cell_Abundance_rep1, Cell_Abundance_rep2, Cell_Abundance_rep3
MO - virioplankton abundance	Virioplankton abundance at BATS site, 2000-2011	Ocean Microbial Observatory	abund_vir, abund_vir_sd
MV1015 Prochlorococcus FCM QPCR		C-MORE	eMIT9312, eMED4, HLIII, HLIV, eNATL2A, eMIT9313
NH1418: CTD profiles	NH1418 ctd	Biological C:N:P ratios	Nanoeukaryotes
Nitrogen isotope fractionation for ammonium assimilation by marine phytoplankton		Biological Nitrogen Isotope Fractionation	Cell_density, Initial_cell_density
NP_Biomass_Huber	Total microbial cell densities and 16S rRNA abundance from North Pond.	North Pond Microbes	cells_per_mL
Photosynthetic and calcification rates	Photosynthetic and calcification rates of Pleurochrysis carterae	OA_Copes_Coccoliths	cell_density
Phytoplankton abundance from bottles and environmental data	Environmental and phytoplankton bottle data from Juneau, AK.	SEAK-AHAB	dinoflagellates, diatoms, Alexandrium_sp
Phytoplankton cell count	Phytoplankton cell count, 2014-2016	Effluent Impacts on Coastal Ecology	Total_cell_count_liter
Pico-cyanobacteria concentration and cell properties	Diel series of pico-cyanobacteria concentration and cell properties.	Picophytoplankton_Regulation	pro, syn
Pleurochrysis carterae 24 hour culture dynamics	Pleurochrysis carterae 24 hour culture dynamics	OA_Copes_Coccoliths	cell_density
Pleurochrysis carterae growth	Growth rate of Pleurochrysis carterae CCMP645 cells as measured by flow cytometry	Marine Chronic Viruses	cell_conc
Pleurochrysis carterae growth cycle culture dynamics	Pleurochrysis carterae growth cycle (14 day) culture dynamics	OA_Copes_Coccoliths	cell_density
Pleurochrysis carterae light-dark calcification	Light-dark calcification rates of Pleurochrysis carterae.	OA_Copes_Coccoliths	attached, attached_blankCorrected
Pro Syn Peuk CC Surface	Prochlorococcus, Synechococcus, and picoeukaryotic phytoplankton for four future climatic scenarios and five Earth System Models (cell/ml) in a global 1ºx1º-grid for the ocean surface (50m)	Ocean Stoichiometry	Prochlorococccus_for_RCP2_6_scenario_HadGEM2ES_Model, Synechococcus_for_HISTORIC_scenario_IPSLCM5AMR_Model, Synechococcus_for_RCP8_5_scenario_MPIESMLR_Model, Eukaryotic_phytoplankton_for_RCP4_5_scenario_NorESM1ME_Model, Prochlorococccus_for_RCP2_6_scenario_IPSLCM5AMR_Model, Synechococcus_for_HISTORIC_scenario_MPIESMLR_Model, Synechococcus_for_RCP8_5_scenario_NorESM1ME_Model, Eukaryotic_phytoplankton_for_RCP8_5_scenario_GFDLESM2G_Model, Prochlorococccus_for_RCP2_6_scenario_MPIESMLR_Model, Synechococcus_for_HISTORIC_scenario_NorESM1ME_Model, Eukaryotic_phytoplankton_for_HISTORIC_scenario_GFDLESM2G_Model, Eukaryotic_phytoplankton_for_RCP8_5_scenario_HadGEM2ES_Model, Prochlorococccus_for_RCP2_6_scenario_NorESM1ME_Model, Synechococcus_for_RCP2_6_scenario_GFDLESM2G_Model, Eukaryotic_phytoplankton_for_HISTORIC_scenario_HadGEM2ES_Model, Eukaryotic_phytoplankton_for_RCP8_5_scenario_IPSLCM5AMR_Model, Prochlorococccus_for_RCP4_5_scenario_GFDLESM2G_Model, Synechococcus_for_RCP2_6_scenario_HadGEM2ES_Model, Eukaryotic_phytoplankton_for_HISTORIC_scenario_IPSLCM5AMR_Model, Eukaryotic_phytoplankton_for_RCP8_5_scenario_MPIESMLR_Model, Prochlorococccus_for_RCP4_5_scenario_HadGEM2ES_Model, Synechococcus_for_RCP2_6_scenario_IPSLCM5AMR_Model, Eukaryotic_phytoplankton_for_HISTORIC_scenario_MPIESMLR_Model, Eukaryotic_phytoplankton_for_RCP8_5_scenario_NorESM1ME_Model, Prochlorococccus_for_RCP4_5_scenario_IPSLCM5AMR_Model, Synechococcus_for_RCP2_6_scenario_MPIESMLR_Model, Eukaryotic_phytoplankton_for_HISTORIC_scenario_NorESM1ME_Model, Prochlorococccus_for_RCP4_5_scenario_MPIESMLR_Model, Synechococcus_for_RCP2_6_scenario_NorESM1ME_Model, Eukaryotic_phytoplankton_for_RCP2_6_scenario_GFDLESM2G_Model, Prochlorococccus_for_RCP4_5_scenario_NorESM1ME_Model, Synechococcus_for_RCP4_5_scenario_GFDLESM2G_Model, Eukaryotic_phytoplankton_for_RCP2_6_scenario_HadGEM2ES_Model, Prochlorococccus_for_RCP8_5_scenario_GFDLESM2G_Model, Synechococcus_for_RCP4_5_scenario_HadGEM2ES_Model, Eukaryotic_phytoplankton_for_RCP2_6_scenario_IPSLCM5AMR_Model, Prochlorococccus_for_RCP8_5_scenario_HadGEM2ES_Model, Synechococcus_for_RCP4_5_scenario_IPSLCM5AMR_Model, Eukaryotic_phytoplankton_for_RCP2_6_scenario_MPIESMLR_Model, Prochlorococccus_for_HISTORIC_scenario_GFDLESM2G_Model, Prochlorococccus_for_RCP8_5_scenario_IPSLCM5AMR_Model, Synechococcus_for_RCP4_5_scenario_MPIESMLR_Model, Eukaryotic_phytoplankton_for_RCP2_6_scenario_NorESM1ME_Model, Prochlorococccus_for_HISTORIC_scenario_HadGEM2ES_Model, Prochlorococccus_for_RCP8_5_scenario_MPIESMLR_Model, Synechococcus_for_RCP4_5_scenario_NorESM1ME_Model, Eukaryotic_phytoplankton_for_RCP4_5_scenario_GFDLESM2G_Model, Prochlorococccus_for_HISTORIC_scenario_IPSLCM5AMR_Model, Prochlorococccus_for_RCP8_5_scenario_NorESM1ME_Model, Synechococcus_for_RCP8_5_scenario_GFDLESM2G_Model, Eukaryotic_phytoplankton_for_RCP4_5_scenario_HadGEM2ES_Model, Prochlorococccus_for_HISTORIC_scenario_MPIESMLR_Model, Synechococcus_for_HISTORIC_scenario_GFDLESM2G_Model, Synechococcus_for_RCP8_5_scenario_HadGEM2ES_Model, Eukaryotic_phytoplankton_for_RCP4_5_scenario_IPSLCM5AMR_Model, Prochlorococccus_for_HISTORIC_scenario_NorESM1ME_Model, Prochlorococccus_for_RCP2_6_scenario_GFDLESM2G_Model, Synechococcus_for_HISTORIC_scenario_HadGEM2ES_Model, Synechococcus_for_RCP8_5_scenario_IPSLCM5AMR_Model, Eukaryotic_phytoplankton_for_RCP4_5_scenario_MPIESMLR_Model
Prochlorococcus and Synechococcus nitrite accumulation in batch culture	Prochlorococcus and Synechococcus nitrite accumulation in batch culture	Prochlorococcus N assimilation	Cell_Concentration_FCM, Cell_Concentration_QPCR_MIT0915, Cell_Concentration_QPCR_MIT0917, Cell_Concentration_QPCR_MIT1214
Prochlorococcus in situ cell cycle phases	Prochlorococcus in situ Cell Cycle Phases Fractions.	Picophytoplankton_Regulation	S_pc, G2_pc, G1_pc
Profile data		N2O in ETNP	Syn, Chlpos, HetBact, PEneg, PEpos, Picoeuk, Prochl
Pseudo-nitzschia counts, nutrients and more	Pseudo-nitzschia counts, nutrients and more	C-AIM	Pseudonitzschia_cells_L, Pseudonitzschia_chains_L
PUA experimental design	PUA experimental design	DiatomAldehydes	Bacteria
RV Atlantic Explorer BATS BV50 Plankton cell abundances and APA	Plankton cell abundances and APA data.	Small protists in microbial loop	P_Prot, NP_Prot, Phyto, Dino
SBDOM11 mini-remineralization expt.	bacterial abundance, growth rates, and DOC from SBDOM11 cruise	SBDOM	Bact_abun_sampling_time, Bact_abun_A, Bact_abun_B
Seawater data and site descriptions	Site descriptions and physical environmental conditions of reefs where sampling occurred.	Coral Microbial Relationships	prochlorococcus_A, prochlorococcus_B, synechococcus_A, synechococcus_B, picoeukaryote_A, picoeukaryote_B, nonpigmentedPicoplankton_A, nonpigmentedPicoplankton_B
Sediment microbial MPNs	North Atlantic subseafloor sediment viable microbe numbers/metabolisms from cruise KN223	Subseafloor metabolisms	MPN_min, MPN_max
Series 1A: light and temperature	T. pseudonana growth: light and temperature effects	Stressors on Marine Phytoplankton	count_cells_ml
Series 1B: cell size and abundance	Series 1B: cell size, abundance	Stressors on Marine Phytoplankton	abundance_cells_mL
Series 1B: light and temperature on growth follow-up expts	1B: T. pseudonana growth: light and temperature effects	Stressors on Marine Phytoplankton	cell_counts
Series 2A: cell size and abundance	Series 2A: cell size, abundance	Stressors on Marine Phytoplankton	abundance_cells_mL
Series 3B: bubble expt flow cytometry	Series 3B: bubble expt flow cytometry	Stressors on Marine Phytoplankton	Concentration_cells_mL
Series 4A: cell abundance and size	Series 4A: cell abundance and size	Stressors on Marine Phytoplankton	Concentration
Si Depletion Experiment: BSi		Coccolithophore Silicon Requirements	Cells_per_mL
Si Depletion Experiment: Cell Counts		Coccolithophore Silicon Requirements	Cells_per_mL
SoMMoS dataset	Southeastern Mediterranean Monthly cruise Series	HADFBA	Cell_Count
Symbiodinium genotype responses to Nitrogen	Symbiodinium genotype responses to nitrogen (Expt 2)	Host Symbiont Temp Response	lncells
Symbiodinium genotype responses to temperature	Symbiodinium genotype responses to temperature (Expt 1)	Host Symbiont Temp Response	NumberCells
Symbiodinium_Seriatopora photosynthesis	Symbiodinium cell density, chlorophyll, respiration, photosynthetic yield in Seriatopora coral	Climate_Coral_Larvae, MCR LTER	Symb_surf_area
T. pseudonana fatty acids by biovolume	T. pseudonana fatty acids by biovolume	Phytoplankton Community Responses	cells_ml
T. pseudonana fatty acids per cell	T. pseudonana fatty acids by cell	Phytoplankton Community Responses	cells_ml
Thermophile abundance - MPN	Abundances of various thermophiles, and total CH4 produced in microcosms	NeMO2015	MPN_L
Tidal study of seawater microbial communities		Coral Exometabolomes	Prochlorococcus, Synechococcus, Picoeukaryotes, Unpigmented_cells
Transcriptomic response of Emiliania huxleyi to HHQ	Transcriptomic response of Emiliania huxleyi to HHQ	HHQSignals	samp_size
Vitacopss: nutrients and microbial cell counts	Nutrients and picoplankton cell counts with nitrate and B vitamins from San Pedro Ocean Timeseries (SPOT), 2015	B-vitamin plankton succession	Synechococcus, bacteria, picoeukaryotes

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Parameter: cell_concentration