AE1620 bottles: Biogeochemical and Microbial data |
bottle data AE1620 |
Bacterial DOC cycling |
Bact |
AE1703 bottles: Biogeochemical and Microbial data |
bottle data AE1703 |
Bacterial DOC cycling |
Bact |
Auto-induction in Marine Diatoms |
Results from laboratory experiments testing autoinduction in marine diatoms, Thalassiosira pseudonana and Phaeodactylum tricornutum |
PhytoplanktonQS |
cell_conc |
Bacterial cell counts |
Bacterial cell counts during CDOM monoculture experiment |
PlankDOM |
concentration_uL, concentration_mL |
Bleached Octocoral Symbiont Cell Counts |
Bleached Octocoral Symbiont Cell Counts |
Octocoral symbiont diversity |
count_avg, count_stdev, total_cells_in_sample, cells_vol_tissue |
Breviolum antillogorgium cell counts |
Cell counts for B. antillogorgium cultures |
Host Symbiont Temp Response |
Count_1, Count_2, Count_3, Count_4, Count_5, Count_6, Mean |
Cell counts - water |
Cell counts from Mariana and Kermadec trenches, 2014 |
Mariana Perspectives |
Cell_counts_mL |
Cell counts in dilution experiment |
Prochlorococcus and Synechococcus cell counts in dilution experiment treatments. |
Picophytoplankton_Regulation |
Pro, Syn |
Cell counts in polyps – Fall 2018 experiment |
Cell counts in coral polyps |
Host Symbiont Temp Response |
Cells_ml, Cells_polyp |
Chemical Defenses-1: Flores et al. 2012 |
Chemical Defenses-1: Flores et al. 2012 |
Chemical Defenses |
Densitiy |
Chemical Defenses-4: Griffin et al. 2019 |
Chemical Defenses-4: Griffin et al. 2019 |
Chemical Defenses |
Cell_Number |
Chemical Defenses-5: Park and Dam 2021 |
Chemical Defenses-5: Park and Dam 2021 |
Chemical Defenses |
Cell_Number |
Coral reef seawater microbial communities |
Coral reef seawater microbial communities |
Coral Exometabolomes |
Prochlorococcus_cells_mL, Synechococcus_cells_mL, Picoeukaryotes_cells_mL, Unpigmented_cells_cells_mL |
Coral-bacterioplankton data from mesocosm experiments |
Bacterioplankton data from coral and coral mucus aquaria experiments. |
Coral Microbial Relationships |
DAPI_count, nonPigmentPico, synechococcus, picoeukaryote, lowHeterotrophicBac, highHeterotrophicBac, SAR11, rhodobacteracea, alteromonas, vibrio, thaumarchaeota, euryarchaeota |
Culture Data |
Symbiodinium microadriaticum cultures |
Host Symbiont Temp Response |
CellsPermL |
Dendraster_Grazing_OA_Expt2017 |
Dendraster_Grazing_OA_Expt2017 |
Climate stressors on larvae |
cell_concentration |
DEPRECATED: Optical properties |
DEPRECATED: Optical properties 2016 & 2017 |
Varadero Reef |
Symb_density |
Dinoflagellate culturing |
Size and chemical responses of two dinoflagellate species used in natural high light exposure experiments. |
Protist signaling |
Replicate_cell_counts |
Emiliania huxleyi Chl-a, POC, cell volumes |
Chlorophyll-a, POC, and cell volume of E. huxleyi at 3 pCO2 levels |
E Hux Response to pCO2 |
cell_concentration |
Emiliania huxleyi dilution calculations |
Emiliania huxleyi growth rates under different pCO2 levels |
E Hux Response to pCO2 |
day1_concentration_init, day1_concentration_dil, day2_concentration_init |
EN556 LV incubations: DOC, bacterial cell concentration, and bacterial production |
Large volume incubation: DOC, bacterial cell concentration and production, EN556 |
Patterns of activities |
cells_per_mL |
EN556 seawater measurements and initial conditions |
Bulk water experiment: initial nutrients, bacterial cell concentration and production, EN556 |
Patterns of activities |
cells_per_mL |
Exudate Uptake Incubations - Microbial Abundances (Flow Cytometry) |
Exudate Uptake Incubations - Microbial Abundances (Flow Cytometry) |
Coral Exometabolomes |
Unpigmented_cells |
Fe-Labeling Expt: E.coli and phage T4 or T5 |
Fe-Labeling Expt: E.coli and phage T4 or T5 |
Fe-Virus |
phage_VPL_ml |
Field domoic acid and copepods |
|
CLASiC |
Pnitz_density |
Flow Cytometry Results |
|
Heat Tolerant Corals |
Negative_Events, Negative_Sym_Conc, Negative_Cells, ALLEVENTS_Conc, SYMBIODINIUM_Conc, Cell_Count, Negative_Total_Count |
FlowCAM imaging cytometer data from EN616 cruise |
|
Cocco-Mix |
Round_4_to_12um, Ovoid_4_to_12um, Dinoflagellates, Ciliates, Diatoms, Silicoflagellates, Other_Cells, Total, Small_0_to_4um |
Grazing experiment 2 and 3: daily cell counts |
Daily cell count data for low to high pCO2 acclimated E. huxleyi |
E Hux Response to pCO2 |
cell_count |
Grazing experiment 4: Carbon and Nitrogen |
Carbon and Nitrogen data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
cell_count, total_cells |
Grazing experiment 4: cell carbohydrates |
Cellular carbohydrate data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
cell_ml_extract, cell_ml_culture |
Grazing experiment 4: Chlorophyll a |
Chlorophyll-a data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
cell_concentration |
Grazing experiment 5: Carbon and Nitrogen |
Carbon and Nitrogen data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
total_cells |
Grazing experiment 5: cell carbohydrates |
Cellular carbohydrate data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
cell_ml, cells_per_ml_extract |
Grazing experiment 5: Chlorophyll a |
Chlorophyll a data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
cell_concentration |
Grazing experiment 5: long term grazing and growth by Oxyrrhis |
Long term ingestion and growth by Oxyrrhis for low-high pCO2 acclimated Rhodomonas sp. |
E Hux Response to pCO2 |
Oxyrrhis_per_ml_day_0, Oxyrrhis_per_ml_day_1, Rhodo_per_ml_with_Oxyrrhis_day_0, Rhodo_per_ml_with_Oxyrrhis_day_1, Rhodo_per_ml_control_day_0, Rhodo_per_ml_control_day_1 |
Grazing experiment 6: Carbon and Nitrogen |
Carbon and Nitrogen data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
total_cells |
Grazing experiment 6: cell carbohydrates |
Cellular carbohydrate data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
cell_ml, cells_per_ml_extract |
Grazing experiment 6: cell lipids |
Cellular lipid data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
cells_filtered_ml |
Grazing experiment 6: Chlorophyll a |
Chlorophyll a data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
cell_concentration |
Grazing experiment 6: long term grazing by Coxliella and growth |
Long term ingestion and growth by Coxliella for low-high pCO2 acclimated Rhodomonas sp. |
E Hux Response to pCO2 |
Coxliella_per_ml_day_0, Coxliella_per_ml_day_1, Rhodo_per_ml_with_Coxliella_day_0, Rhodo_per_ml_with_Coxliella_day_1, Rhodo_per_ml_control_day_0, Rhodo_per_ml_control_day_1 |
Grazing experiment 7: Carbon and Nitrogen |
Cellular carbon and Nitrogen data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
total_cells |
Grazing experiment 7: cell carbohydrates |
Cellular carbohydrate data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
cell_ml, cells_per_ml_extract |
Grazing experiment 7: cell lipids |
Cellular lipid data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
cells_filtered_ml |
Grazing experiment 7: Chlorophyll a |
Chlorophyll-a data for low-high pCO2 acclimated Rhodomonas sp. cultures |
E Hux Response to pCO2 |
cell_concentration |
Grazing experiment 7: long term grazing by Gyrodinium and growth |
Long term ingestion and growth by Gyrodinium for low-high pCO2 acclimated Rhodomonas sp. |
E Hux Response to pCO2 |
Rhodo_per_ml_control_day_1, Gyrodinium_per_ml_day_0, Gyrodinium_per_ml_day_1, Rhodo_per_ml_with_Gyrodinium_day_0, Rhodo_per_ml_with_Gyrodinium_day_1, Rhodo_per_ml_control_day_0 |
Growth rate of Pleurochrysis carterae |
Experimental data on growth rates of Pleurochrysis carterae |
OA_Copes_Coccoliths |
cell_density, ln_cellDensity |
Growth rates and bulk isotope values |
Growth rates, bulk isotope values, elemental composition |
Amino Acid Sediment 15N |
Cell_density |
Halomethane concentrations in cell culture |
Concentrations of CH3Br, CH3I, CH3Cl, and CH3Br3 in cell culture |
Volatile_Hydrocarbons |
cells_per_ml |
Heterosigma akashiwo acclimation |
Heterosigma akashiwo acclimation - BioProject PRJNA377729 |
P-ExpEv |
samp_size |
HHQ Flow Cytometry |
HHQ Flow cytometry |
HHQSignals |
Synechococcus, Picoeukaryotes, Nanoeukaryotes, Total_Phytoplankton_lt_15um, Bacteria |
Incubation in diffuse flow vent fluids - Crab Spa |
Results of on-board incubations of microbes in diffuse flow vent fluids collected from Crab Spa and Alvinella patch |
Microbial Communities at Deep-Sea Vents |
cell_concentration |
Incubations: cell abundance, carbon fixation rates, nitrates |
Carbon fixation rates Crab Spa |
vent O2 NO3 roles |
cell_abund |
Initial prey abundance and biomass: JEMBE 2017 |
Initial prey abundance and biomass: JEMBE 2017 |
EAGER: Copepod nauplii |
prey_concentration, prey_concentration_se |
ISOHgII Rates |
Hg(II) photoreduction rates and stable isotope enrichment |
Phytoplankton MeHg |
Init_cell_density, Final_cell_density |
ISOMeHg Rates |
MeHg photoreduction rates and stable isotope enrichment |
Phytoplankton MeHg |
Init_cell_density |
Mesocosm warming experiment quantitative PCR inhibition controls |
|
Seagrass and Oyster Ecosystems |
cells_uL_sample, cells_uL_pos_cntrl, cells_uL_inhibition |
Mesocosm warming experiment seagrass metrics |
|
Seagrass and Oyster Ecosystems |
cells_per_extraction, cells_per_mg |
Metabolite Uptake Incubations - Microbial Abundances (Flow Cytometry) |
Metabolite Uptake Incubations - Microbial Abundances (Flow Cytometry) |
Coral Exometabolomes |
Unpigmented_cells |
Microbial abundance |
Microbial abundance |
Salp Food Web Ecology |
PEUK |
Microbial incubation diversity and geochemistry |
Microbial diversity and geochemistry of marine sediment mesocosm, Cape lookout bight, North Carolina |
Subsurface Organic Breakdown, IODP-347 Microbial Quantification |
total_cells |
Minutocellus polymorphus TEP and Microaggregate Formation: Cell Abundance |
|
Marine Plankton Aggregation |
Cell_Abundance_rep1, Cell_Abundance_rep2, Cell_Abundance_rep3 |
MO - virioplankton abundance |
Virioplankton abundance at BATS site, 2000-2011 |
Ocean Microbial Observatory |
abund_vir, abund_vir_sd |
MV1015 Prochlorococcus FCM QPCR |
|
C-MORE |
eMIT9312, eMED4, HLIII, HLIV, eNATL2A, eMIT9313 |
NH1418: CTD profiles |
NH1418 ctd |
Biological C:N:P ratios |
Nanoeukaryotes |
Nitrogen isotope fractionation for ammonium assimilation by marine phytoplankton |
|
Biological Nitrogen Isotope Fractionation |
Cell_density, Initial_cell_density |
NP_Biomass_Huber |
Total microbial cell densities and 16S rRNA abundance from North Pond. |
North Pond Microbes |
cells_per_mL |
Photosynthetic and calcification rates |
Photosynthetic and calcification rates of Pleurochrysis carterae |
OA_Copes_Coccoliths |
cell_density |
Phytoplankton abundance from bottles and environmental data |
Environmental and phytoplankton bottle data from Juneau, AK. |
SEAK-AHAB |
dinoflagellates, diatoms, Alexandrium_sp |
Phytoplankton cell count |
Phytoplankton cell count, 2014-2016 |
Effluent Impacts on Coastal Ecology |
Total_cell_count_liter |
Pico-cyanobacteria concentration and cell properties |
Diel series of pico-cyanobacteria concentration and cell properties. |
Picophytoplankton_Regulation |
pro, syn |
Pleurochrysis carterae 24 hour culture dynamics |
Pleurochrysis carterae 24 hour culture dynamics |
OA_Copes_Coccoliths |
cell_density |
Pleurochrysis carterae growth |
Growth rate of Pleurochrysis carterae CCMP645 cells as measured by flow cytometry |
Marine Chronic Viruses |
cell_conc |
Pleurochrysis carterae growth cycle culture dynamics |
Pleurochrysis carterae growth cycle (14 day) culture dynamics |
OA_Copes_Coccoliths |
cell_density |
Pleurochrysis carterae light-dark calcification |
Light-dark calcification rates of Pleurochrysis carterae. |
OA_Copes_Coccoliths |
attached, attached_blankCorrected |
Pro Syn Peuk CC Surface |
Prochlorococcus, Synechococcus, and picoeukaryotic phytoplankton for four future climatic scenarios and five Earth System Models (cell/ml) in a global 1ºx1º-grid for the ocean surface (50m) |
Ocean Stoichiometry |
Prochlorococccus_for_RCP2_6_scenario_HadGEM2ES_Model, Synechococcus_for_HISTORIC_scenario_IPSLCM5AMR_Model, Synechococcus_for_RCP8_5_scenario_MPIESMLR_Model, Eukaryotic_phytoplankton_for_RCP4_5_scenario_NorESM1ME_Model, Prochlorococccus_for_RCP2_6_scenario_IPSLCM5AMR_Model, Synechococcus_for_HISTORIC_scenario_MPIESMLR_Model, Synechococcus_for_RCP8_5_scenario_NorESM1ME_Model, Eukaryotic_phytoplankton_for_RCP8_5_scenario_GFDLESM2G_Model, Prochlorococccus_for_RCP2_6_scenario_MPIESMLR_Model, Synechococcus_for_HISTORIC_scenario_NorESM1ME_Model, Eukaryotic_phytoplankton_for_HISTORIC_scenario_GFDLESM2G_Model, Eukaryotic_phytoplankton_for_RCP8_5_scenario_HadGEM2ES_Model, Prochlorococccus_for_RCP2_6_scenario_NorESM1ME_Model, Synechococcus_for_RCP2_6_scenario_GFDLESM2G_Model, Eukaryotic_phytoplankton_for_HISTORIC_scenario_HadGEM2ES_Model, Eukaryotic_phytoplankton_for_RCP8_5_scenario_IPSLCM5AMR_Model, Prochlorococccus_for_RCP4_5_scenario_GFDLESM2G_Model, Synechococcus_for_RCP2_6_scenario_HadGEM2ES_Model, Eukaryotic_phytoplankton_for_HISTORIC_scenario_IPSLCM5AMR_Model, Eukaryotic_phytoplankton_for_RCP8_5_scenario_MPIESMLR_Model, Prochlorococccus_for_RCP4_5_scenario_HadGEM2ES_Model, Synechococcus_for_RCP2_6_scenario_IPSLCM5AMR_Model, Eukaryotic_phytoplankton_for_HISTORIC_scenario_MPIESMLR_Model, Eukaryotic_phytoplankton_for_RCP8_5_scenario_NorESM1ME_Model, Prochlorococccus_for_RCP4_5_scenario_IPSLCM5AMR_Model, Synechococcus_for_RCP2_6_scenario_MPIESMLR_Model, Eukaryotic_phytoplankton_for_HISTORIC_scenario_NorESM1ME_Model, Prochlorococccus_for_RCP4_5_scenario_MPIESMLR_Model, Synechococcus_for_RCP2_6_scenario_NorESM1ME_Model, Eukaryotic_phytoplankton_for_RCP2_6_scenario_GFDLESM2G_Model, Prochlorococccus_for_RCP4_5_scenario_NorESM1ME_Model, Synechococcus_for_RCP4_5_scenario_GFDLESM2G_Model, Eukaryotic_phytoplankton_for_RCP2_6_scenario_HadGEM2ES_Model, Prochlorococccus_for_RCP8_5_scenario_GFDLESM2G_Model, Synechococcus_for_RCP4_5_scenario_HadGEM2ES_Model, Eukaryotic_phytoplankton_for_RCP2_6_scenario_IPSLCM5AMR_Model, Prochlorococccus_for_RCP8_5_scenario_HadGEM2ES_Model, Synechococcus_for_RCP4_5_scenario_IPSLCM5AMR_Model, Eukaryotic_phytoplankton_for_RCP2_6_scenario_MPIESMLR_Model, Prochlorococccus_for_HISTORIC_scenario_GFDLESM2G_Model, Prochlorococccus_for_RCP8_5_scenario_IPSLCM5AMR_Model, Synechococcus_for_RCP4_5_scenario_MPIESMLR_Model, Eukaryotic_phytoplankton_for_RCP2_6_scenario_NorESM1ME_Model, Prochlorococccus_for_HISTORIC_scenario_HadGEM2ES_Model, Prochlorococccus_for_RCP8_5_scenario_MPIESMLR_Model, Synechococcus_for_RCP4_5_scenario_NorESM1ME_Model, Eukaryotic_phytoplankton_for_RCP4_5_scenario_GFDLESM2G_Model, Prochlorococccus_for_HISTORIC_scenario_IPSLCM5AMR_Model, Prochlorococccus_for_RCP8_5_scenario_NorESM1ME_Model, Synechococcus_for_RCP8_5_scenario_GFDLESM2G_Model, Eukaryotic_phytoplankton_for_RCP4_5_scenario_HadGEM2ES_Model, Prochlorococccus_for_HISTORIC_scenario_MPIESMLR_Model, Synechococcus_for_HISTORIC_scenario_GFDLESM2G_Model, Synechococcus_for_RCP8_5_scenario_HadGEM2ES_Model, Eukaryotic_phytoplankton_for_RCP4_5_scenario_IPSLCM5AMR_Model, Prochlorococccus_for_HISTORIC_scenario_NorESM1ME_Model, Prochlorococccus_for_RCP2_6_scenario_GFDLESM2G_Model, Synechococcus_for_HISTORIC_scenario_HadGEM2ES_Model, Synechococcus_for_RCP8_5_scenario_IPSLCM5AMR_Model, Eukaryotic_phytoplankton_for_RCP4_5_scenario_MPIESMLR_Model |
Prochlorococcus and Synechococcus nitrite accumulation in batch culture |
Prochlorococcus and Synechococcus nitrite accumulation in batch culture |
Prochlorococcus N assimilation |
Cell_Concentration_FCM, Cell_Concentration_QPCR_MIT0915, Cell_Concentration_QPCR_MIT0917, Cell_Concentration_QPCR_MIT1214 |
Prochlorococcus in situ cell cycle phases |
Prochlorococcus in situ Cell Cycle Phases Fractions. |
Picophytoplankton_Regulation |
S_pc, G2_pc, G1_pc |
Profile data |
|
N2O in ETNP |
Syn, Chlpos, HetBact, PEneg, PEpos, Picoeuk, Prochl |
Pseudo-nitzschia counts, nutrients and more |
Pseudo-nitzschia counts, nutrients and more |
C-AIM |
Pseudonitzschia_cells_L, Pseudonitzschia_chains_L |
PUA experimental design |
PUA experimental design |
DiatomAldehydes |
Bacteria |
RV Atlantic Explorer BATS BV50 Plankton cell abundances and APA |
Plankton cell abundances and APA data. |
Small protists in microbial loop |
P_Prot, NP_Prot, Phyto, Dino |
SBDOM11 mini-remineralization expt. |
bacterial abundance, growth rates, and DOC from SBDOM11 cruise |
SBDOM |
Bact_abun_sampling_time, Bact_abun_A, Bact_abun_B |
Seawater data and site descriptions |
Site descriptions and physical environmental conditions of reefs where sampling occurred. |
Coral Microbial Relationships |
prochlorococcus_A, prochlorococcus_B, synechococcus_A, synechococcus_B, picoeukaryote_A, picoeukaryote_B, nonpigmentedPicoplankton_A, nonpigmentedPicoplankton_B |
Sediment microbial MPNs |
North Atlantic subseafloor sediment viable microbe numbers/metabolisms from cruise KN223 |
Subseafloor metabolisms |
MPN_min, MPN_max |
Series 1A: light and temperature |
T. pseudonana growth: light and temperature effects |
Stressors on Marine Phytoplankton |
count_cells_ml |
Series 1B: cell size and abundance |
Series 1B: cell size, abundance |
Stressors on Marine Phytoplankton |
abundance_cells_mL |
Series 1B: light and temperature on growth follow-up expts |
1B: T. pseudonana growth: light and temperature effects |
Stressors on Marine Phytoplankton |
cell_counts |
Series 2A: cell size and abundance |
Series 2A: cell size, abundance |
Stressors on Marine Phytoplankton |
abundance_cells_mL |
Series 3B: bubble expt flow cytometry |
Series 3B: bubble expt flow cytometry |
Stressors on Marine Phytoplankton |
Concentration_cells_mL |
Series 4A: cell abundance and size |
Series 4A: cell abundance and size |
Stressors on Marine Phytoplankton |
Concentration |
Si Depletion Experiment: BSi |
|
Coccolithophore Silicon Requirements |
Cells_per_mL |
Si Depletion Experiment: Cell Counts |
|
Coccolithophore Silicon Requirements |
Cells_per_mL |
SoMMoS dataset |
Southeastern Mediterranean Monthly cruise Series |
HADFBA |
Cell_Count |
Symbiodinium genotype responses to Nitrogen |
Symbiodinium genotype responses to nitrogen (Expt 2) |
Host Symbiont Temp Response |
lncells |
Symbiodinium genotype responses to temperature |
Symbiodinium genotype responses to temperature (Expt 1) |
Host Symbiont Temp Response |
NumberCells |
Symbiodinium_Seriatopora photosynthesis |
Symbiodinium cell density, chlorophyll, respiration, photosynthetic yield in Seriatopora coral |
Climate_Coral_Larvae, MCR LTER |
Symb_surf_area |
T. pseudonana fatty acids by biovolume |
T. pseudonana fatty acids by biovolume |
Phytoplankton Community Responses |
cells_ml |
T. pseudonana fatty acids per cell |
T. pseudonana fatty acids by cell |
Phytoplankton Community Responses |
cells_ml |
Thermophile abundance - MPN |
Abundances of various thermophiles, and total CH4 produced in microcosms |
NeMO2015 |
MPN_L |
Tidal study of seawater microbial communities |
|
Coral Exometabolomes |
Prochlorococcus, Synechococcus, Picoeukaryotes, Unpigmented_cells |
Transcriptomic response of Emiliania huxleyi to HHQ |
Transcriptomic response of Emiliania huxleyi to HHQ |
HHQSignals |
samp_size |
Vitacopss: nutrients and microbial cell counts |
Nutrients and picoplankton cell counts with nitrate and B vitamins from San Pedro Ocean Timeseries (SPOT), 2015 |
B-vitamin plankton succession |
Synechococcus, bacteria, picoeukaryotes |