Parameter: NCBI BioProject accession

Short Description:

NCBI BioProject accession

Short Name:

BioProject

Official Name:

BioProject

Description

The National Center for Biotechnology Information (NCBI) BioProject identifier.

A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project.

Datasets associated with this parameter

Dataset Name	Brief Description	Project	PI-Supplied Parameter Name
16S V4 rRNA gene tag sequences from reef seawater	16S V4 rRNA gene tag sequences from reef seawater	Quantitative coral microbiomes	BioProject
18s DNA sequence of potential prey of siphonophores		SiphWeb	BioProject
Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022	Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022	Coral Rickettsiales, Resilient Acerv	BioProject
Acropora cervicornis bleaching sequences	Acropora cervicornis bleaching sequences	Coral Rickettsiales	bioproject_accession
Amplicon sequence variants (ASVs) and taxonomy of Pseudo-nitzschia spp.		C-AIM, NES LTER, NBPTS	BioProject
Atlantic silverside RNA-seq reads		GenomAdapt	BioProject
Ca. Aquarickettsia rohweri transcriptomes		Coral Rickettsiales	BioProject
Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3	picoeukaryote Micromonas commoda	CC_Auto_Hetero_Fluxes	BioProject
Experimental coral treatments	DNA results of Pocillopora cf. meandrina and Acropora hyacinthus	Moorea Virus Project	BioProject
Gene expression of Eurytemora affinis (saline and freshwater)		Evolutionary genomics of a copepod	BioProject
Gulf of Alaska copepods: annotated transcriptomes	The dataset includes the annotation files of nine high-quality de novo transcriptomes generated from shotgun assemblies of short-sequence reads.	Diapause preparation, Neocalanus Gulf of Alaska	BioProject
IRN-BRU MV1405 Transect 5 BioGeoChem		DiatomFeMolBio, iron limitation mosaic	BIOPROJECT_ACCESSION
Juan de Fuca Viruses	Single Amplified Virus Genome sequence accessions at NCBI	Juan de Fuca Viruses	NCBI_BioProject
Kāneʻohe Bay Time-series - microbial community	Kāneʻohe Bay Time-series - microbial community	Pelagibacteromics	bioproject_accession
Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry	Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry	Pelagibacteromics	Amplicon_bioproject_accession, Metagenome_bioproject_accession
Long-term diatom microbiome data and analysis package		LTPE	BioProject
Microbiome dynamics of coral reef and cleanerfish	Microbiome dynamics of coral reef and cleanerfish	Cleanerfish microbiomes	BioProject_accession
Microorganisms associated with doliolids	16S rRNA sequencing doliolids associated microorganisms	Gelatinous Grazer Feeding	bioproject_accession
Microorganisms associated with pyrosomes	16S rRNA sequencing pyrosome-associated microorganisms	Gelatinous Grazer Feeding	bioproject_accession
Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female	Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female	Diapause preparation, Neocalanus Gulf of Alaska	BioProject
NCBI accession numbers for RNAseq data from five coral species experimentally exposed to SCTLD	NCBI accession numbers for RNAseq data from five coral species experimentally exposed to SCTLD	Multi-Species Coral Disease	BioProject
NCBI accession numbers for S. arcuata and S. meunieri	NCBI accession numbers for S. arcuata and S. meunieri	Ciliate Omics	NCBI_BioprojectProject_ID
Northern California Current Microorganisms	16S rRNA gene of microorganisms	Gelatinous Grazer Feeding	bioproject_accession
OC1703A Sediment 16S rRNA and 16S rRNA gene amplicon sequences	OC1703A Sediment 16S rRNA and 16S rRNA gene amplicon sequences	Deep Sediment N Fix	BioProject
OC1703A Sediment MG-MT	OC1703A Sediment MG-MT	Deep Sediment N Fix	BioProject
OC1703A Sediment nifH amplicon sequences	OC1703A Sediment nifH amplicon sequences	Deep Sediment N Fix	BioProject
Pocillopora sequences from 2019		Pocilloporid Coral Diversity	BioProject
Pooled sequencing data from field-collected Eurytemora affinis		Evolutionary genomics of a copepod	BioProject
Pseudo-nitzschia spp. presence-absence and environmental data		C-AIM, NES LTER, NBPTS	NCBI_BioProject
RADseq data from Atlantic silversides used for linkage and QTL mapping		GenomAdapt	bioproject_accession
Raw low-coverage whole genome sequencing reads		GenomAdapt	bioproject_accession
RNAseq data used to identify viral genomes	Alphaflexivirus Genomes in Stony Coral Tissue Loss Disease-Affected, Disease-Exposed, and Disease-Unexposed Coral Colonies in the U.S. Virgin Islands	Multi-Species Coral Disease	Accession
Salp and pteropod associated microorganisms	16S rRNA sequencing salp and pteropod microorganisms	Gelatinous Grazer Feeding	bioproject_accession
Seagrass Microbiome Data		Eelgrass disease	BioProject
Sequencing Reads	Accession numbers	KeysCoralPopgen	BioProject
Sinking particle sample information for BATS microbial communities		Marine Plankton Aggregation	bioproject_accession
Sponge Symbiont Carbon and Nutrient Cycling	Sponge Symbiont Carbon and Nutrient Cycling	Sponge_Loop	BioProject
SSU rRNA Gene Sequencing from SPOT	SSU rRNA Gene Sequencing from SPOT	SPOT	study_accession
Substrate-specific metabolic responses of model marine bacteria	Substrate-specific metabolic responses of model marine bacteria - metadata for transcriptomic expression data	C-CoMP Model Bacteria	BioProject
T. rotula Common Garden Experiment	T. rotula Common Garden Experiment	Phytoplankton Community Responses	BioProject
T. rotula microbiome global sample	T. rotula microbiome global sample	Diatom Gene Flow	Bioproject
Three-Prime Tag-Sequencing (3' Tag-Seq) Data for Pisaster ochraceus		PoGOMO	bioproject_ncbi
USVI Time-series	USVI Time-series	Coral Chorus	BioProject_accession
Viral Consortia in Stony Corals	Viral Consortia in Stony Corals	Multi-Species Coral Disease	Bio_Project
Whole genome sequence data for Pisaster ochraceus		PoGOMO	bioproject_ncbi
Whole Genome Sequencing of Eelgrass Bodega and Tomales Bay	Whole Genome Sequencing of Eelgrass Bodega and Tomales Bay	ZosteraEcoGenomics	bioproject_accession
Zostera marina whole genome resequencing	Zostera marina whole genome resequencing	ZosteraEcoGenomics	BioProject

Programs associated with this parameter

None

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Parameter: NCBI BioProject accession