Parameter: BioProject

Short Description: NCBI BioProject accession
Short Name: BioProject
Official Name: BioProject

Description

The National Center for Biotechnology Information (NCBI) BioProject identifier.

A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project.  


DatasetPI-Supplied DescriptionPI-Supplied Name
16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020NCBI BioProject number BioProject
18s DNA sequences of planktonic animals that are potential prey of siphonophores in water off California USA from 2016-2020The NCBI identifier for the BioProject associated with the data BioProject
Information about sequences of coral, Acropora cervicornis, collected from host colonies at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys in November and December 2019NCBI BioProject identifier BioProject
Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015NCBI BioProject identifier bioproject_accession
Amplicon sequence variants (ASVs) and taxonomy of Pseudo-nitzschia spp. from Narragansett Bay in Rhode Island, USA and the Northeast U.S. Shelf (NES-LTER transect) from 2018-2023NCBI BioProject accession number BioProject
Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids reared under different temperatures in 2017NCBI BioProject Identifier BioProject
Sampling and experimental metadata related to 'Candidatus' Aquarickettsia rohweri transcriptome data from host Acropora cervicornis colonies collected at Looe Key, Lower Florida Keys from Apr to Jun of 2019BioProject identifier at NCBI BioProject
Bacterial transcriptional response to picoeukaryote Micromonas commodaNCBI Bioproject Accession BioProject
Diel multi 'omics data from surface ocean microbial community samples collected during Hawaiʻi Diel Sampling (HaDS) in Kāneʻohe Bay and adjacent offshore waters of O'ahu, Hawai'i from December 2020 to August 2021NCBI BioProject Accession. NCBI_BioProject
NCBI accession metadata for Eukaryotic viruses encoding ribosomal protein eL40 from samples collected on KM1419 and KM1108 from Mar 2011 to Sep 2014Bioproject number associated with FloV-SA2 and Florenciella sp.strain UHM3020 Bioproject_number
Microbiome composition of coral species collected from reefs in Mo'orea, French Polynesia and exposed to various experimental treatments in August 2018NCBI BioProject number BioProject
Evolutionary and acclimatory shifts in gene expression of Eurytemora affinis copepods reared in saline and freshwater conditions during laboratory experiments from 2011-2014NCBI BioProject identifier BioProject
Annotated de novo transcriptomes generated from six co-occurring species of calanoid copepods from the R/V Tiglax TXF18, TXS19, TXF15, TXF17 in the Gulf of Alaska from 2015-2019NCBI BioProject accession BioProject
Biological, physical, and chemical data from surface Transect 5 on MV1405 (IRN-BRU)NCBI SRA Bioproject accession number for diatom 18S amplicon sequencing. BIOPROJECT_ACCESSION
Single-cell amplified genomes (SAGs) of uncultivated Aminicenantia bacteria from the subseafloor of Juan de Fuca Ridge (JdFR) from deployments of R/V Atlantis AT18-07 and AT42-11 from 2011 and 2019NCBI (National Center for Biotechnology Information) BioProject identifier BioProject
Collection information and genetic accession identifiers for Single Amplified Virus Genomes from hydrothermal fluids at IODP HOLE U1362B CORK observatory from R/V Atlantis cruise AT18-07 ROV Jason dives at the Juan de Fuca Ridge Flank in July of 2011NCBI BioProject accession NCBI_BioProject
Flow cytometry, 16S rRNA gene amplicons, chlorophyll a, and surface seawater measurements taken between August 2017 to June 2019 Kāneʻohe Bay, Oʻahu, HawaiʻiNCBI Bioproject Accession for amplicon data. bioproject_accession
Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, HawaiʻiNCBI Biosample Accession. Amplicon_bioproject_accession
Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, HawaiʻiNCBI Biosample Accession. Metagenome_bioproject_accession
Full genome and transcriptome sequence assembly of the non-model organism Kellet’s whelk, Kelletia kelletiiNCBI Bioproject accession ID BioProject
Analysis protocols, sample information, code, and datasets associated with the manuscript Structure and long-term stability of the microbiome in diverse diatom cultures from samples collected in Guam, California, and Gulf of Mexico between 2008 and 2016NCBI BioProject BioProject
Contextual data for samples collected for metagenome sequencing from the deep subseafloor biosphere as accessed via CORKs along the Juan de Fuca Ridge flank in the Northeast Pacific Ocean between 2008 and 2014National Center for Biotechnology Information (NCBI) BioProject accession number (https://www.ncbi.nlm.nih.gov/) NCBI_Bioproject_Accession
Data from nutrient manipulation experiments (conducted on EXPORTS cruise DY131) aimed at relieving or inducing nutrient stress in phytoplankton and quantifying these responses using metatranscriptomic sequencingThe National Center for Biotechnology Information (NCBI) BioProject identifier. A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project.   BioProject
Microbiome dynamics of coral reef and cleanerfish from ecological surveys, in situ manipulations, and laboratory experiments conducted from 2020-2021SRA BioProject Accession number BioProject_accession
Microbiome data from sponges collected in 2013 and 2014 from reefs in Honduras, Belize, Panama and the Florida Keys.Bioproject NCBI accession number Bioproject
Eukaryotic and prokaryotic microbial taxa retained by wild-caught doliolids collected during bloom events at three different shelf locations in the northern California Current system in June 2019.NCBI Bioproject accession ID bioproject_accession
High-throughput sequencing of the 16S rRNA gene, microscopy, and flow cytometry of pyrosome-associated microorganisms compared to seawater sampled during a Pyrosoma atlanticum bloom in the Northern California Current System in July 2018.NCBI Bioproject accession ID bioproject_accession
Molecular identification of genetic variants of Neocalanus flemingeri in the Gulf of Alaska from samples collected from 2015 to 2023NCBI BioProject containing the SRX set BioProject
Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female from the R/V Tiglax and R/V Sikuliaq in the Northern Gulf of Alaska from 2015-2022NCBI BioProject accession BioProject
NCBI accession numbers for RNAseq data from five coral species experimentally exposed to Stony Coral Tissue Loss Disease (SCTLD) at the University of the Virgin Islands in 2019NCBI BioProject number BioProject
NCBI accession numbers from a study of two tintinnid ciliate species, Schmidingerella arcuata and Schmidingerella meunieriNCBI BioProject identifier NCBI_BioprojectProject_ID
RNAseq data from apparently healthy and Stony Coral Tissue Loss Disease-affected Montastraea cavernosa coral collected from St. Thomas, US Virgin Islands in 2020NCBI BioProject accession number NCBI_BioProject_accession
16S rRNA gene of microorganisms sampled along the Newport Hydrographic (NH) and Trinidad Head (TR) lines, in OR and CA in 2018 and 2019NCBI Bioproject accession ID bioproject_accession
NCBI accession numbers describing 16S rRNA and 16S rRNA gene amplicon sequences from sediment samples collected offshore of San Francisco, Califronia, USA in March 2017 on R/V Oceanus cruise OC1703ANCBI BioProject accession BioProject
19 Metagenomes and 7 metatranscriptomes from sediment samples collected offshore of San Francisco, Califronia, USABioProject accession BioProject
NCBI accession numbers describing nifH amplicon sequences from sediment samples collected offshore of San Francisco, Califronia, USA in March 2017 on R/V Oceanus cruise OC1703ABioProject accession BioProject
Genetic sequence accessions, collection information, and methodology for raw sequences from ezRAD libraries of Pocillopora spp. collected in Moorea, French Polynesia in 2019NCBI SRA BioProject ID BioProject
Pooled sequencing data of field-collected Eurytemora affinis copepods from nine locations in North America collected October 2012 to March 2014NCBI BioProject identifier BioProject
Pseudo-nitzschia spp. presence-absence and environmental data in Narragansett Bay in Rhode Island, USA and the Northeast U.S. Shelf (NES-LTER transect) from 2018-2023NCBI BioProject number NCBI_BioProject
RADseq data from Atlantic silversides used for linkage and QTL mapping.NCBI BioProject accession number bioproject_accession
Sample information and genetic accession information for raw low-coverage genomic sequence reads from 248 different Atlantic silverside (Menidia menidia) collected along the east coast of North America between 2005 to 2007NCBI BioProject accession number bioproject_accession
Sequence read accession (SRA) numbers and collection metadata for coral microbiome collected in Moorea, French Polynesia from Jul 2018 to Aug 2020NCBI SRA BioProject containing the sequences from these samples BioProject
RNAseq data used to identify Alphaflexivirus genomes in Stony Coral Tissue Loss Disease-affected, disease-exposed, and disease-unexposed coral colonies in the U.S. Virgin Islands (Multi-Species Coral Disease project)BioProject Accession ID Accession
Salp and pteropod associated microorganisms from the Western Edge of the Gulf Stream sampled in September 2019.NCBI Bioproject accession ID bioproject_accession
NCBI BioProject number. BioProject
Sequencing reads_(2bRAD) for Montastrea cavernosa, Siderastrea siderea, Agaricia agaricites and Porites astreoides from Florida ReefsBioproject number BioProject
Sample information for 16S and 18S V4 amplicon sequencing of microbial communities in sinking particles and water column samples collected during R/V Atlantic Explorer cruises AE1718 and AE1809 in 2017 and 2018 at BATS in BermudaBioProject accession identifier at the National Center for Biotechnology Information (NCBI) bioproject_accession
Microbial Symbionts, Carbon, and Nutrient Cycling in Caribbean Coral Reef Sponges from Conch Reef, Key Largo (Florida, USA) and Carrie Bow Cay (Belize) in June and July 2016NCBI BioProject number BioProject
NCBI accession numbers and related metadata for an SRA archive of the Pacific oyster, Magallana gigasGenBank BioProject number bioproject_accession
A characterization of microbes at the San Pedro Ocean Time-series (SPOT) from 2005 to 2018, using SSU rRNA gene sequencing from two size fractions, with a universal primer set that amplifies from prokaryotes and eukaryotesNational Center for Biotechnology Information (NCBI) project identifier study_accession